Rh2AG004600

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000450
Physical Location & Seq
Reverse (-)
430547 .. 435197
4651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG004600.1

Sequence Viewer

Length: 672 bp
ATGACAAAGAAAGGAAAAGGACAGAAAAGGGCAGCAAGCACTTTACATCTCGAGTCTTCCACACGTTCACGGTCTGAAGACATTCCCAATGAATCAACACATGGTGACGAAGAGGTGGAAGGGCTAGAAACTGAGGCTACCAAGAGGAAAGGTAGAGGCCTTGCCAAAGGAGAAAAAGGCTACGGCATGAATGCAGAGATTTATGGAAAGAGGATTATAACTCCCCAAGCTTTGCGAAGTATTTGGCCCCTCTTCAGGTCAGAGCTGCAAGGCCCATTCATAACATGGGCACAATATCCGCAAGATGAATTGGATAGGTTGTTTGACCTATGGAAGAATAAAAATTTCAAATTTGATTGCTCTGAGGAAGAACTGAAAGATGTATTCACGGAACATATCAAGACTCGTTATGGTGATTGGATGAGTGAAATTCGGAATAGTGTTTTCCGCAAACACAAGACTGCTGCAGCTCGATATGCCAACAATCCGTCGTATTTGAAGCCAGAAATATGGACACCAATGGTTGATGAATGGCTGAAAGAAACGTGGCAGGAGAAGAGTGAGCGGAATGCAATTAATCGTGACAAATCAACTATGGTGCATACAACGGGTTCAGTTCCAATGGCGAAGTACATAAAAGAGGAGGTATGTACAACAACTAGTTTCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

223

Amino Acids

25.85

Weight (kDa)

8.69

Isoelectric Point (pI)

47.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 168 - 218 2.2e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 218
AccBSI CCGCTC 1 cut(s) 565
AciI CCGC 3 cut(s) 299, 448, 565
AcsI RAATTY 3 cut(s) 343, 350, 429
AcuI CTGAAG 2 cut(s) 96, 238
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 2 cut(s) 632, 652
AfiI CCNNNNNNNGG 1 cut(s) 255
AflIII ACRYGT 1 cut(s) 62
AgsI TTSAA 2 cut(s) 349, 499
AhlI ACTAGT 1 cut(s) 659
AluBI AGCT 3 cut(s) 230, 265, 470
AluI AGCT 3 cut(s) 230, 265, 470
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 3 cut(s) 157, 245, 271
ApeKI GCWGC 4 cut(s) 32, 265, 464, 467
ApoI RAATTY 3 cut(s) 343, 350, 429
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 81
AspS9I GGNCC 2 cut(s) 246, 272
AsuHPI GGTGA 2 cut(s) 116, 425
AvaI CYCGRG 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 292
BbsI GAAGAC 2 cut(s) 48, 84
BbvI GCAGC 4 cut(s) 44, 252, 451, 479
BceAI ACGGC 1 cut(s) 199
BcuI ACTAGT 1 cut(s) 659
BfaI CTAG 2 cut(s) 125, 660
BfmI CTRYAG 1 cut(s) 465
BisI GCNGC 4 cut(s) 33, 266, 465, 468
BlsI GCNGC 4 cut(s) 34, 267, 466, 469
BmeT110I CYCGRG 1 cut(s) 50
BmgT120I GGNCC 2 cut(s) 246, 272
BmiI GGNNCC 1 cut(s) 248
BpiI GAAGAC 2 cut(s) 48, 84
Bsc4I CCNNNNNNNGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 123, 354
BseRI GAGGAG 1 cut(s) 656
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 4 cut(s) 44, 252, 451, 479
BshFI GGCC 3 cut(s) 159, 247, 273
BsiHKCI CYCGRG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 255
BsmI GAATGC 2 cut(s) 196, 574
BsnI GGCC 3 cut(s) 159, 247, 273
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 1 cut(s) 292
Bsp1407I TGTACA 1 cut(s) 650
BspACI CCGC 3 cut(s) 299, 448, 565
BspANI GGCC 3 cut(s) 159, 247, 273
BspCNI CTCAG 2 cut(s) 124, 355
BspLI GGNNCC 1 cut(s) 248
BspMAI CTGCAG 1 cut(s) 469
BsrBI CCGCTC 1 cut(s) 565
BsrGI TGTACA 1 cut(s) 650
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 3 cut(s) 105, 257, 551
BstAUI TGTACA 1 cut(s) 650
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 132, 363
BstF5I GGATG 1 cut(s) 426
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 4 cut(s) 44, 252, 451, 479
BstV2I GAAGAC 2 cut(s) 48, 84
BstXI CCANNNNNNTGG 1 cut(s) 510
BsuRI GGCC 3 cut(s) 159, 247, 273
BtsCI GGATG 1 cut(s) 426
Cac8I GCNNGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 246, 272
Csp6I GTAC 2 cut(s) 631, 651
CviAII CATG 3 cut(s) 101, 187, 285
CviQI GTAC 2 cut(s) 631, 651
DdeI CTNAG 2 cut(s) 132, 363
DraIII CACNNNGTG 1 cut(s) 104
Eam1104I CTCTTC 3 cut(s) 105, 257, 551
EarI CTCTTC 3 cut(s) 105, 257, 551
Eco147I AGGCCT 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 96, 238
Eco88I CYCGRG 1 cut(s) 50
FaeI CATG 3 cut(s) 104, 190, 288
FatI CATG 3 cut(s) 100, 186, 284
Fnu4HI GCNGC 4 cut(s) 33, 266, 465, 468
FokI GGATG 1 cut(s) 433
Fsp4HI GCNGC 4 cut(s) 33, 266, 465, 468
FspBI CTAG 2 cut(s) 125, 660
GluI GCNGC 4 cut(s) 33, 266, 465, 468
HaeIII GGCC 3 cut(s) 159, 247, 273
Hin1II CATG 3 cut(s) 104, 190, 288
HindIII AAGCTT 1 cut(s) 228
HinfI GANTC 3 cut(s) 53, 92, 403
HphI GGTGA 2 cut(s) 116, 425
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 5 cut(s) 76, 262, 364, 435, 668
Hpy188III TCNNGA 3 cut(s) 50, 400, 581
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 1 cut(s) 493
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4IV ACGT 2 cut(s) 64, 545
HpyCH4V TGCA 5 cut(s) 194, 268, 467, 572, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 2 cut(s) 132, 363
HpySE526I ACGT 2 cut(s) 64, 545
Hsp92II CATG 3 cut(s) 104, 190, 288
LpnPI CCDG 3 cut(s) 241, 516, 536
Lsp1109I GCAGC 4 cut(s) 44, 252, 451, 479
MaeI CTAG 2 cut(s) 125, 660
MaeII ACGT 2 cut(s) 64, 545
MaeIII GTNAC 2 cut(s) 104, 581
MbiI CCGCTC 1 cut(s) 565
MboII GAAGA 7 cut(s) 48, 89, 122, 244, 346, 380, 568
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 5 cut(s) 308, 343, 350, 429, 573
MlyI GAGTC 2 cut(s) 62, 397
MnlI CCTC 9 cut(s) 106, 127, 138, 149, 204, 260, 358, 634, 637
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 1 cut(s) 576
Mva1269I GAATGC 2 cut(s) 196, 574
MwoI GCNNNNNNNGC 1 cut(s) 476
NlaIII CATG 3 cut(s) 104, 190, 288
NlaIV GGNNCC 1 cut(s) 248
NmuCI GTSAC 2 cut(s) 104, 581
PaeR7I CTCGAG 1 cut(s) 50
PceI AGGCCT 1 cut(s) 159
PctI GAATGC 2 cut(s) 196, 574
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 4 cut(s) 34, 267, 466, 469
PleI GAGTC 2 cut(s) 61, 397
PpsI GAGTC 2 cut(s) 61, 397
PshBI ATTAAT 1 cut(s) 576
PsiI TTATAA 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 248
PspPI GGNCC 2 cut(s) 246, 272
PstI CTGCAG 1 cut(s) 469
RsaI GTAC 2 cut(s) 632, 652
RsaNI GTAC 2 cut(s) 631, 651
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 4 cut(s) 33, 266, 465, 468
Sau96I GGNCC 2 cut(s) 246, 272
SchI GAGTC 2 cut(s) 62, 397
SduI GDGCHC 1 cut(s) 292
SfcI CTRYAG 1 cut(s) 465
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SpeI ACTAGT 1 cut(s) 659
Sse9I AATT 5 cut(s) 308, 343, 350, 429, 573
SseBI AGGCCT 1 cut(s) 159
SsiI CCGC 3 cut(s) 299, 448, 565
SspMI CTAG 2 cut(s) 125, 660
StuI AGGCCT 1 cut(s) 159
TaaI ACNGT 1 cut(s) 72
TaiI ACGT 2 cut(s) 67, 548
TaqI TCGA 2 cut(s) 51, 472
TasI AATT 5 cut(s) 308, 343, 350, 429, 573
TatI WGTACW 2 cut(s) 630, 650
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TseFI GTSAC 2 cut(s) 104, 581
TseI GCWGC 4 cut(s) 32, 265, 464, 467
Tsp45I GTSAC 2 cut(s) 104, 581
TspDTI ATGAA 5 cut(s) 105, 203, 268, 321, 543
TspGWI ACGGA 2 cut(s) 404, 477
VspI ATTAAT 1 cut(s) 576
XapI RAATTY 3 cut(s) 343, 350, 429
XcmI CCANNNNNNNNNTGG 1 cut(s) 282
XhoI CTCGAG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 2 cut(s) 125, 660
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.