FvH4_1g24190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000450
Physical Location & Seq
Reverse (-)
16064000 .. 16068349
4350 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g24190.t1

Sequence Viewer

Length: 1098 bp
ATGGAGCAACTCATGGACTATGAGCTCACGAGGCTCGAGAATATTAGACGAAACAACAAACGGTTGGCTGCTTTGAACCTCCCATCCATGGCCGCCCAAGGGTCTGCCTCAACCAAACGCCTAAGATATGTCGTCATTCCAGATCAGGTCGACCCCAATCAACATACCATAGAGGTTGAGAAGCTAGAAACTGAGGCTACTGAGCTGGAAATTGAGGCTACCAAAAGGAAGGGCAGAGGTCTTGTCAAAGGTGATAAAGGCTATGGCAATAATGCACAGGGAGAACTGAAAGATGCATTCAGGCATTATATCAAGAATAATTATAGGCAATGGATGAGTGAGATTCGAAAAAGCGTTTTCTCCAAACATAAGACTGCTGCAGCTAGATATGCCAACAATCCATCATATGTGATTCCGGAGATATGGACACAGATGGATGTGAGTGAACAAAACGCGATTAATCGTGACAAATTGACTATGGTGCATATAACAGGTTCAGTTCCAATGGTTAAATACATAAAAGAGGAGATCGATACGACCGGAGTTGAACCAAGCCCAATAGAGATGTTTAGAAGGTTTCATGTCTCTGCTCCTAAAGATGAAAAGCCGGAACATTGGAAGAGTGAGAAGGCAAAGGATCTTTATGAATCTATGGAACTGAAAAAGAAAATAAATGAAGCTTTGGGTGGTGACGAATTGGATGACTGGGACATATATAAGGAGGAGGTCCTCAAAGAGCCCAAATGTGGCAAAACACTTGGCTTAGGTGGCGGAATGGAACCACCTGAAGCTGTGTGTGGTTCAAGTAGCAGCCAAACTTGCAATAAGTATTTGTGCTTAGAACGTGAAGAGGAGTTTGGACAAGTGAAACATAAAGTTGAAAGTCTTACGGATGAGGTGGCAGATTTGACTCATTCAAGTTTTGCTTGCAAGAGAATCAGCCTTTTCGGAATGAAGGTGTTGCCATGGTTTTGCAACACCTCCTTGTTCACTTCAGCATCTGTGGACACTATGATTGGGCTTGGTTCCTTAGACTCACCTACAACTGCACCAATCTCAAAATCTGCTCATGGAGATTATGAAGCATGTGCACCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

366

Amino Acids

41.15

Weight (kDa)

5.94

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transposase_24 PF03004 146 - 260 1.7e-06 Plant transposase (Ptta/En/Spm family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AccII CGCG 1 cut(s) 455
AccIII TCCGGA 1 cut(s) 415
AciI CCGC 2 cut(s) 93, 771
AclWI GGATC 1 cut(s) 645
AcoI YGGCCR 1 cut(s) 90
AcuI CTGAAG 2 cut(s) 807, 978
AfiI CCNNNNNNNGG 3 cut(s) 88, 99, 746
AgsI TTSAA 5 cut(s) 76, 548, 804, 881, 918
AjuI GAANNNNNNNTTGG 2 cut(s) 840, 872
AloI GAACNNNNNNTCC 2 cut(s) 68, 100
AluBI AGCT 6 cut(s) 25, 184, 205, 383, 680, 791
AluI AGCT 6 cut(s) 25, 184, 205, 383, 680, 791
Alw21I GWGCWC 2 cut(s) 27, 1093
Alw26I GTCTC 1 cut(s) 589
Alw44I GTGCAC 1 cut(s) 1089
AlwI GGATC 1 cut(s) 645
AlwNI CAGNNNCTG 1 cut(s) 1001
Ama87I CYCGRG 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 415
AoxI GGCC 1 cut(s) 90
ApaLI GTGCAC 1 cut(s) 1089
ApeKI GCWGC 4 cut(s) 68, 377, 380, 810
AseI ATTAAT 1 cut(s) 459
AspS9I GGNCC 1 cut(s) 727
AsuHPI GGTGA 3 cut(s) 263, 701, 1029
AsuII TTCGAA 1 cut(s) 346
AvaI CYCGRG 1 cut(s) 35
AvaII GGWCC 1 cut(s) 727
BaeGI GKGCMC 1 cut(s) 1093
BanII GRGCYC 2 cut(s) 27, 741
BauI CACGAG 1 cut(s) 28
Bbv12I GWGCWC 2 cut(s) 27, 1093
BbvI GCAGC 4 cut(s) 55, 364, 392, 822
BccI CCATC 3 cut(s) 91, 409, 427
BcoDI GTCTC 1 cut(s) 589
BfaI CTAG 2 cut(s) 185, 384
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 5 cut(s) 69, 93, 378, 381, 811
BlsI GCNGC 5 cut(s) 70, 94, 379, 382, 812
Bme18I GGWCC 1 cut(s) 727
BmeT110I CYCGRG 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 727
BmiI GGNNCC 2 cut(s) 780, 1027
BmrI ACTGGG 1 cut(s) 715
BmsI GCATC 2 cut(s) 283, 1007
BmuI ACTGGG 1 cut(s) 715
Bpu10I CCTNAGC 1 cut(s) 763
Bpu14I TTCGAA 1 cut(s) 346
Bsa29I ATCGAT 1 cut(s) 531
BsaJI CCNNGG 3 cut(s) 87, 97, 965
BsaWI WCCGGW 2 cut(s) 415, 539
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 99, 746
Bse1I ACTGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 335
BseAI TCCGGA 1 cut(s) 415
BseCI ATCGAT 1 cut(s) 531
BseDI CCNNGG 3 cut(s) 87, 97, 965
BseGI GGATG 5 cut(s) 83, 339, 442, 706, 898
BseLI CCNNNNNNNGG 3 cut(s) 88, 99, 746
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 2 cut(s) 183, 192
BseNI ACTGG 1 cut(s) 710
BseRI GAGGAG 3 cut(s) 539, 737, 866
BseSI GKGCMC 1 cut(s) 1093
BseXI GCAGC 4 cut(s) 55, 364, 392, 822
BsgI GTGCAG 1 cut(s) 1032
Bsh1236I CGCG 1 cut(s) 455
Bsh1285I CGRYCG 1 cut(s) 540
BshFI GGCC 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 531
BsiEI CGRYCG 1 cut(s) 540
BsiHKAI GWGCWC 2 cut(s) 27, 1093
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 416, 540, 608
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 3 cut(s) 88, 99, 746
BsmAI GTCTC 1 cut(s) 589
BsmFI GGGAC 1 cut(s) 722
BsmI GAATGC 1 cut(s) 296
BsnI GGCC 1 cut(s) 92
BsoBI CYCGRG 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 346
Bsp1286I GDGCHC 3 cut(s) 27, 741, 1093
Bsp13I TCCGGA 1 cut(s) 415
Bsp143I GATC 3 cut(s) 142, 528, 637
Bsp19I CCATGG 2 cut(s) 87, 965
BspACI CCGC 2 cut(s) 93, 771
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 184, 193
BspDI ATCGAT 1 cut(s) 531
BspEI TCCGGA 1 cut(s) 415
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 2 cut(s) 780, 1027
BspMAI CTGCAG 1 cut(s) 382
BspPI GGATC 1 cut(s) 645
BspT104I TTCGAA 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 710
BssECI CCNNGG 3 cut(s) 87, 97, 965
BssMI GATC 3 cut(s) 142, 528, 637
BssSI CACGAG 1 cut(s) 28
BssT1I CCWWGG 3 cut(s) 87, 97, 965
Bst2BI CACGAG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 2 cut(s) 614, 843
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 1 cut(s) 928
BstDEI CTNAG 6 cut(s) 122, 192, 201, 763, 838, 1030
BstDSI CCRYGG 2 cut(s) 87, 965
BstF5I GGATG 5 cut(s) 83, 339, 442, 706, 898
BstFNI CGCG 1 cut(s) 455
BstKTI GATC 3 cut(s) 145, 531, 640
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 3 cut(s) 142, 528, 637
BstMCI CGRYCG 1 cut(s) 540
BstMWI GCNNNNNNNGC 4 cut(s) 31, 389, 768, 819
BstNSI RCATGY 1 cut(s) 1089
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 1093
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 4 cut(s) 55, 364, 392, 822
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
Bsu15I ATCGAT 1 cut(s) 531
BsuRI GGCC 1 cut(s) 92
BsuTUI ATCGAT 1 cut(s) 531
BtgI CCRYGG 2 cut(s) 87, 965
BtsCI GGATG 5 cut(s) 83, 339, 442, 706, 898
Cac8I GCNNGC 1 cut(s) 928
CaiI CAGNNNCTG 1 cut(s) 1001
Cfr13I GGNCC 1 cut(s) 727
ClaI ATCGAT 1 cut(s) 531
CviAII CATG 6 cut(s) 13, 88, 581, 966, 1070, 1086
DdeI CTNAG 6 cut(s) 122, 192, 201, 763, 838, 1030
DpnI GATC 3 cut(s) 144, 530, 639
DpnII GATC 3 cut(s) 142, 528, 637
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 614, 843
EarI CTCTTC 2 cut(s) 614, 843
EciI GGCGGA 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 25
Eco130I CCWWGG 3 cut(s) 87, 97, 965
Eco24I GRGCYC 2 cut(s) 27, 741
Eco47I GGWCC 1 cut(s) 727
Eco53kI GAGCTC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 807, 978
Eco88I CYCGRG 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 25
EcoO109I RGGNCCY 1 cut(s) 727
EcoT14I CCWWGG 3 cut(s) 87, 97, 965
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 2 cut(s) 27, 741
ErhI CCWWGG 3 cut(s) 87, 97, 965
FaeI CATG 6 cut(s) 16, 91, 584, 969, 1073, 1089
FalI AAGNNNNNCTT 2 cut(s) 910, 942
FaqI GGGAC 1 cut(s) 722
FatI CATG 6 cut(s) 12, 87, 580, 965, 1069, 1085
FauNDI CATATG 1 cut(s) 406
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 5 cut(s) 69, 93, 378, 381, 811
FokI GGATG 5 cut(s) 70, 346, 449, 713, 905
FriOI GRGCYC 2 cut(s) 27, 741
Fsp4HI GCNGC 5 cut(s) 69, 93, 378, 381, 811
FspBI CTAG 2 cut(s) 185, 384
GluI GCNGC 5 cut(s) 69, 93, 378, 381, 811
HaeIII GGCC 1 cut(s) 92
HapII CCGG 3 cut(s) 416, 540, 608
Hin1II CATG 6 cut(s) 16, 91, 584, 969, 1073, 1089
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 678
HinfI GANTC 6 cut(s) 343, 412, 647, 910, 936, 1034
HpaII CCGG 3 cut(s) 416, 540, 608
HphI GGTGA 3 cut(s) 263, 701, 1029
Hpy166II GTNNAC 5 cut(s) 151, 446, 990, 1006, 1091
Hpy188I TCNGA 1 cut(s) 950
Hpy188III TCNNGA 6 cut(s) 28, 37, 140, 313, 416, 464
Hpy8I GTNNAC 5 cut(s) 151, 446, 990, 1006, 1091
HpyAV CCTTC 4 cut(s) 223, 567, 622, 949
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 844
HpyCH4V TGCA 9 cut(s) 275, 296, 380, 484, 822, 930, 975, 1049, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 31, 389, 768, 819
HpyF3I CTNAG 6 cut(s) 122, 192, 201, 763, 838, 1030
HpySE526I ACGT 1 cut(s) 844
Hsp92II CATG 6 cut(s) 16, 91, 584, 969, 1073, 1089
Kpn2I TCCGGA 1 cut(s) 415
Kzo9I GATC 3 cut(s) 142, 528, 637
LmnI GCTCC 2 cut(s) 4, 595
Lsp1109I GCAGC 4 cut(s) 55, 364, 392, 822
LweI GCATC 2 cut(s) 283, 1007
MaeI CTAG 2 cut(s) 185, 384
MaeII ACGT 1 cut(s) 844
MaeIII GTNAC 2 cut(s) 464, 689
MalI GATC 3 cut(s) 144, 530, 639
MboI GATC 3 cut(s) 142, 528, 637
MboII GAAGA 2 cut(s) 631, 860
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 3 cut(s) 27, 741, 1093
MluCI AATT 4 cut(s) 210, 319, 470, 695
MlyI GAGTC 2 cut(s) 904, 1028
Mph1103I ATGCAT 1 cut(s) 298
MroI TCCGGA 1 cut(s) 415
MseI TTAA 2 cut(s) 459, 510
MspI CCGG 3 cut(s) 416, 540, 608
Mva1269I GAATGC 1 cut(s) 296
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 4 cut(s) 31, 389, 768, 819
NcoI CCATGG 2 cut(s) 87, 965
NdeI CATATG 1 cut(s) 406
NdeII GATC 3 cut(s) 142, 528, 637
NlaIII CATG 6 cut(s) 16, 91, 584, 969, 1073, 1089
NlaIV GGNNCC 2 cut(s) 780, 1027
NmuCI GTSAC 2 cut(s) 464, 689
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 1089
NspV TTCGAA 1 cut(s) 346
PaeR7I CTCGAG 1 cut(s) 35
PctI GAATGC 1 cut(s) 296
PfeI GAWTC 4 cut(s) 343, 412, 647, 936
PkrI GCNGC 5 cut(s) 70, 94, 379, 382, 812
PleI GAGTC 2 cut(s) 904, 1028
PpsI GAGTC 2 cut(s) 904, 1028
PpuMI RGGWCCY 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 727
PspN4I GGNNCC 2 cut(s) 780, 1027
PspPI GGNCC 1 cut(s) 727
PspPPI RGGWCCY 1 cut(s) 727
PstI CTGCAG 1 cut(s) 382
PstNI CAGNNNCTG 1 cut(s) 1001
PsuI RGATCY 1 cut(s) 637
SacI GAGCTC 1 cut(s) 27
SalI GTCGAC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 459, 510
SatI GCNGC 5 cut(s) 69, 93, 378, 381, 811
Sau3AI GATC 3 cut(s) 142, 528, 637
Sau96I GGNCC 1 cut(s) 727
SchI GAGTC 2 cut(s) 904, 1028
SduI GDGCHC 3 cut(s) 27, 741, 1093
SfaNI GCATC 2 cut(s) 283, 1007
SfcI CTRYAG 1 cut(s) 378
Sfr274I CTCGAG 1 cut(s) 35
SfuI TTCGAA 1 cut(s) 346
SinI GGWCC 1 cut(s) 727
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
Sse9I AATT 4 cut(s) 210, 319, 470, 695
SsiI CCGC 2 cut(s) 93, 771
SspI AATATT 1 cut(s) 43
SspMI CTAG 2 cut(s) 185, 384
SstI GAGCTC 1 cut(s) 27
StyI CCWWGG 3 cut(s) 87, 97, 965
TaaI ACNGT 1 cut(s) 63
TaiI ACGT 1 cut(s) 847
TaqI TCGA 4 cut(s) 36, 150, 346, 531
TasI AATT 4 cut(s) 210, 319, 470, 695
TauI GCSGC 1 cut(s) 95
TfiI GAWTC 4 cut(s) 343, 412, 647, 936
Tru1I TTAA 2 cut(s) 459, 510
Tru9I TTAA 2 cut(s) 459, 510
TseFI GTSAC 2 cut(s) 464, 689
TseI GCWGC 4 cut(s) 68, 377, 380, 810
Tsp45I GTSAC 2 cut(s) 464, 689
TspDTI ATGAA 6 cut(s) 569, 615, 660, 690, 968, 1095
TspGWI ACGGA 1 cut(s) 905
VneI GTGCAC 1 cut(s) 1089
VpaK11BI GGWCC 1 cut(s) 727
VspI ATTAAT 1 cut(s) 459
XceI RCATGY 1 cut(s) 1089
XhoI CTCGAG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 2 cut(s) 185, 384
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.