RLG00000019616

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000450
Physical Location & Seq
Forward (+)
54293740 .. 54295037
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019616

Sequence Viewer

Length: 402 bp
ATGGCAAAGAAAGCAACAGGTCGCAAAACGGCAGTCAGTGGGACAGAAGATATTACTACATCGATCACTGATAATGAAAGACAACAGACTGGTATGGCAAAAAAAACAACAAGTCACAGTAGGCCATTTAGCAGAACACAAGATACCAGTACACCAGTCAATGTTAGTGAAACACAAGAGACTGTCATTGCAAAGAAACCAAAGAATCGCAAAAGACCATTAAGCACAGATAGTATTACACCTTCTAATGATAGTGAAGAGCAAGAAACTGAAGAGACAAGGTCTGAGTCTCAACCTTCAAATGCAACAGGTTCAGGTCCTCCTAAGAAGAAAGGTAGAGGGGGAGCTAAGGGTGAAAAGGGACATGGCATGCCAGCTGATATACATGACGGAAGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.32

Weight (kDa)

9.74

Isoelectric Point (pI)

60.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 1 cut(s) 300
AluBI AGCT 2 cut(s) 347, 377
AluI AGCT 2 cut(s) 347, 377
Alw26I GTCTC 3 cut(s) 173, 269, 294
AoxI GGCC 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 18, 50
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 365
AvaII GGWCC 1 cut(s) 317
BarI GAAGNNNNNNTAC 2 cut(s) 226, 258
BceAI ACGGC 1 cut(s) 45
BcoDI GTCTC 3 cut(s) 173, 269, 294
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 348
Bsa29I ATCGAT 1 cut(s) 62
Bse1I ACTGG 3 cut(s) 94, 147, 155
Bse3DI GCAATG 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 62
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 94, 147, 155
BshFI GGCC 1 cut(s) 124
BshVI ATCGAT 1 cut(s) 62
BslFI GGGAC 2 cut(s) 55, 375
BsmAI GTCTC 3 cut(s) 173, 269, 294
BsmFI GGGAC 2 cut(s) 55, 375
BsnI GGCC 1 cut(s) 124
Bsp143I GATC 1 cut(s) 63
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 277
BspDI ATCGAT 1 cut(s) 62
BspQI GCTCTTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 186
BsrI ACTGG 3 cut(s) 94, 147, 155
BssMI GATC 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 119, 184
Bst6I CTCTTC 2 cut(s) 252, 267
BstC8I GCNNGC 2 cut(s) 371, 375
BstDEI CTNAG 3 cut(s) 285, 324, 348
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 3 cut(s) 173, 269, 294
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 62
BsuRI GGCC 1 cut(s) 124
BsuTUI ATCGAT 1 cut(s) 62
BtsIMutI CAGTG 2 cut(s) 43, 66
Cac8I GCNNGC 2 cut(s) 371, 375
Cfr13I GGNCC 1 cut(s) 317
ClaI ATCGAT 1 cut(s) 62
Csp6I GTAC 1 cut(s) 150
CviAII CATG 3 cut(s) 365, 370, 386
CviJI RGCY 3 cut(s) 124, 347, 377
CviKI_1 RGCY 3 cut(s) 124, 347, 377
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 3 cut(s) 285, 324, 348
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 252, 267
EarI CTCTTC 2 cut(s) 252, 267
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 317
FaeI CATG 3 cut(s) 368, 373, 389
FaiI YATR 5 cut(s) 95, 366, 371, 383, 387
FaqI GGGAC 2 cut(s) 55, 375
FatI CATG 3 cut(s) 364, 369, 385
HaeIII GGCC 1 cut(s) 124
Hin1II CATG 3 cut(s) 368, 373, 389
HinfI GANTC 2 cut(s) 205, 287
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 286
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 252, 306, 387
HpyCH4III ACNGT 2 cut(s) 119, 184
HpyCH4V TGCA 2 cut(s) 191, 305
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 285, 324, 348
Hsp92II CATG 3 cut(s) 368, 373, 389
Kzo9I GATC 1 cut(s) 63
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 7 cut(s) 3, 75, 160, 168, 294, 300, 387
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 4 cut(s) 59, 269, 284, 340
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 2 cut(s) 330, 332
MseI TTAA 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 377
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 1 cut(s) 63
NlaIII CATG 3 cut(s) 368, 373, 389
NmuCI GTSAC 1 cut(s) 113
NspI RCATGY 1 cut(s) 373
PaeI GCATGC 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 1 cut(s) 280
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PpuMI RGGWCCY 1 cut(s) 317
Psp5II RGGWCCY 1 cut(s) 317
PspPI GGNCC 1 cut(s) 317
PspPPI RGGWCCY 1 cut(s) 317
PsrI GAACNNNNNNTAC 2 cut(s) 127, 159
PsyI GACNNNGTC 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 221
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 296
SetI ASST 9 cut(s) 22, 244, 284, 298, 313, 319, 337, 349, 379
SinI GGWCC 1 cut(s) 317
SphI GCATGC 1 cut(s) 373
TaaI ACNGT 2 cut(s) 119, 184
TaqI TCGA 1 cut(s) 62
TatI WGTACW 1 cut(s) 149
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 2 cut(s) 43, 73
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 2 cut(s) 43, 73
Tth111I GACNNNGTC 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 317
XceI RCATGY 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.