Rh3BG359200

Transposase family tnp2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000450
Physical Location & Seq
Forward (+)
43097179 .. 43099186
2008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG359200.1

Sequence Viewer

Length: 708 bp
ATGTGCACCAAGAAGACAATCTGGTCAACCATTGCAAGACAAGTCTTAGTTATCTATCTTCTCACTTCCGGAGAACAAAAAGACATTCTTCGTATACAACATGGTGATGATCGGGTGGATGAGTTGCACAAAAAAAATTTTATGGAATGGTTTTCTGAAAAGATCCAGCAATTGAATGCAAATGGAAAAGTGAGCGCTCAAATGCGTTCTTTGGCCCAACGTCTTGGAAAGCAAGCTGTCTGCTACAAAGGTTACAATATCCATGGATTTCGGTTCCGTACAGTACAACGTGATGTTACTAAGAAAACACAAAATAGTGGAGTTATGGTCAAAGGAGAGAACCAGATTAACTGTGTGTCTTGGTATGGAACCCTTATAGATGTAGTTGAGCTCTGGTATACAAATCACAATAAAGTTGTCTTGTTTCACTGTAATTGGTTTGACACAGCTACCAAAGGCAAAGGTTATAAGGAAGATTGTTACGGCATACTAAGTGTCAACAATAAGGGTAAGTTGAATACCCAAGAGCCATTTGTGCTGGCATCCCAAGCAACCCAGGTTTATTATGTTGAAGGAATAAAAAACAGTACTTGGAGTGTCGTGGTGGAAACCAAACCTAGAAACGTTTTTGAAATGCCTACTAATGAAGAGGAACCGTATCAAGAAGAAGAATCTCAGATGAGTCACACATACATATCCAAACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

235

Amino Acids

27.24

Weight (kDa)

8.83

Isoelectric Point (pI)

25.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4216 PF13952 130 - 201 7.8e-25 Domain of unknown function (DUF4216)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AasI GACNNNNNNGTC 1 cut(s) 22
AccI GTMKAC 2 cut(s) 94, 398
AccIII TCCGGA 1 cut(s) 68
AclI AACGTT 1 cut(s) 624
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 1 cut(s) 136
AfaI GTAC 3 cut(s) 280, 285, 589
AfeI AGCGCT 1 cut(s) 196
AgsI TTSAA 4 cut(s) 175, 517, 572, 632
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 3 cut(s) 236, 391, 449
AluI AGCT 3 cut(s) 236, 391, 449
Alw21I GWGCWC 2 cut(s) 8, 393
Alw44I GTGCAC 1 cut(s) 4
AlwI GGATC 1 cut(s) 157
Aor13HI TCCGGA 1 cut(s) 68
Aor51HI AGCGCT 1 cut(s) 196
AoxI GGCC 1 cut(s) 213
ApaLI GTGCAC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 8
BanII GRGCYC 1 cut(s) 393
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 2 cut(s) 8, 393
BceAI ACGGC 1 cut(s) 499
BciT130I CCWGG 1 cut(s) 557
BfaI CTAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 198
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 1 cut(s) 557
BmgT120I GGNCC 1 cut(s) 214
BmiI GGNNCC 3 cut(s) 275, 370, 654
BmrFI CCNGG 1 cut(s) 557
BmsI GCATC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 262, 555
BsaWI WCCGGW 1 cut(s) 68
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bse3DI GCAATG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 68
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 2 cut(s) 262, 555
BseGI GGATG 2 cut(s) 124, 542
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 8, 393
BsiSI CCGG 1 cut(s) 69
BsmI GAATGC 1 cut(s) 181
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 2 cut(s) 8, 393
Bsp13I TCCGGA 1 cut(s) 68
Bsp143I GATC 2 cut(s) 109, 162
Bsp19I CCATGG 1 cut(s) 262
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 688
BspEI TCCGGA 1 cut(s) 68
BspLI GGNNCC 3 cut(s) 275, 370, 654
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 262, 555
BssMI GATC 2 cut(s) 109, 162
BssNAI GTATAC 2 cut(s) 95, 399
BssT1I CCWWGG 1 cut(s) 262
Bst1107I GTATAC 2 cut(s) 95, 399
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 6 cut(s) 283, 353, 431, 587, 657, 705
Bst6I CTCTTC 1 cut(s) 642
BstC8I GCNNGC 2 cut(s) 234, 540
BstDEI CTNAG 4 cut(s) 46, 300, 491, 675
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 2 cut(s) 124, 542
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 112, 165
BstMBI GATC 2 cut(s) 109, 162
BstMWI GCNNNNNNNGC 2 cut(s) 535, 548
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 8
BstV2I GAAGAC 1 cut(s) 20
BstX2I RGATCY 1 cut(s) 162
BstXI CCANNNNNNTGG 1 cut(s) 224
BstYI RGATCY 1 cut(s) 162
BstZ17I GTATAC 2 cut(s) 95, 399
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 2 cut(s) 124, 542
BtsIMutI CAGTG 1 cut(s) 427
Cac8I GCNNGC 2 cut(s) 234, 540
CfoI GCGC 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 279, 284, 588
CviAII CATG 2 cut(s) 101, 263
CviJI RGCY 5 cut(s) 215, 236, 391, 449, 529
CviKI_1 RGCY 5 cut(s) 215, 236, 391, 449, 529
CviQI GTAC 3 cut(s) 279, 284, 588
DdeI CTNAG 4 cut(s) 46, 300, 491, 675
DpnI GATC 2 cut(s) 111, 164
DpnII GATC 2 cut(s) 109, 162
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Ecl136II GAGCTC 1 cut(s) 391
Eco130I CCWWGG 1 cut(s) 262
Eco24I GRGCYC 1 cut(s) 393
Eco47III AGCGCT 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 391
EcoICRI GAGCTC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 555
EcoT14I CCWWGG 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 104, 266
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FatI CATG 2 cut(s) 100, 262
FblI GTMKAC 2 cut(s) 94, 398
FokI GGATG 2 cut(s) 131, 529
FriOI GRGCYC 1 cut(s) 393
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 69
HhaI GCGC 1 cut(s) 197
Hin1II CATG 2 cut(s) 104, 266
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 27, 499
HindII GTYRAC 2 cut(s) 27, 499
HinfI GANTC 2 cut(s) 671, 682
HpaII CCGG 1 cut(s) 69
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 5 cut(s) 6, 27, 95, 399, 499
Hpy188I TCNGA 2 cut(s) 157, 678
Hpy188III TCNNGA 2 cut(s) 69, 662
Hpy8I GTNNAC 5 cut(s) 6, 27, 95, 399, 499
HpyAV CCTTC 1 cut(s) 566
HpyCH4III ACNGT 6 cut(s) 283, 353, 431, 587, 657, 705
HpyCH4IV ACGT 3 cut(s) 220, 289, 624
HpyCH4V TGCA 4 cut(s) 6, 35, 127, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 535, 548
HpyF3I CTNAG 4 cut(s) 46, 300, 491, 675
HpySE526I ACGT 3 cut(s) 220, 289, 624
Hsp92II CATG 2 cut(s) 104, 266
HspAI GCGC 1 cut(s) 195
Kpn2I TCCGGA 1 cut(s) 68
Kzo9I GATC 2 cut(s) 109, 162
LpnPI CCDG 8 cut(s) 7, 82, 179, 356, 379, 524, 542, 569
LweI GCATC 1 cut(s) 551
MaeI CTAG 1 cut(s) 618
MaeII ACGT 3 cut(s) 220, 289, 624
MaeIII GTNAC 4 cut(s) 251, 295, 479, 683
MalI GATC 2 cut(s) 111, 164
MboI GATC 2 cut(s) 109, 162
MboII GAAGA 7 cut(s) 25, 50, 80, 485, 659, 677, 680
MfeI CAATTG 1 cut(s) 170
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 2 cut(s) 8, 393
MluCI AATT 3 cut(s) 136, 170, 433
MlyI GAGTC 1 cut(s) 691
MnlI CCTC 1 cut(s) 643
MroI TCCGGA 1 cut(s) 68
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 557
MunI CAATTG 1 cut(s) 170
Mva1269I GAATGC 1 cut(s) 181
MvaI CCWGG 1 cut(s) 557
MwoI GCNNNNNNNGC 2 cut(s) 535, 548
NcoI CCATGG 1 cut(s) 262
NdeII GATC 2 cut(s) 109, 162
NlaIII CATG 2 cut(s) 104, 266
NlaIV GGNNCC 3 cut(s) 275, 370, 654
NmuCI GTSAC 1 cut(s) 683
PctI GAATGC 1 cut(s) 181
PfeI GAWTC 1 cut(s) 671
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
PsiI TTATAA 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 393
Psp1406I AACGTT 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 555
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 275, 370, 654
PspPI GGNCC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 162
RsaI GTAC 3 cut(s) 280, 285, 589
RsaNI GTAC 3 cut(s) 279, 284, 588
RseI CAYNNNNRTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 393
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 2 cut(s) 109, 162
Sau96I GGNCC 1 cut(s) 214
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 1 cut(s) 691
ScrFI CCNGG 1 cut(s) 557
SduI GDGCHC 2 cut(s) 8, 393
SfaNI GCATC 1 cut(s) 551
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 3 cut(s) 136, 170, 433
SspMI CTAG 1 cut(s) 618
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 555
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 6 cut(s) 283, 353, 431, 587, 657, 705
TaiI ACGT 3 cut(s) 223, 292, 627
TasI AATT 3 cut(s) 136, 170, 433
TatI WGTACW 2 cut(s) 283, 587
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 1 cut(s) 683
Tsp45I GTSAC 1 cut(s) 683
TspDTI ATGAA 1 cut(s) 660
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 434
VneI GTGCAC 1 cut(s) 4
XapI RAATTY 1 cut(s) 136
XmiI GTMKAC 2 cut(s) 94, 398
XspI CTAG 1 cut(s) 618
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.