Rroxscaffold_6G00420320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000450
Physical Location & Seq
Reverse (-)
41607244 .. 41608401
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420320.1

Sequence Viewer

Length: 300 bp
ATGTACAGAGTGAAGTGGAGTGGATCGGAATCGCTGTTGATTCATTCTTTCGGTGCGGTGCGGCAAGCAAAAGAAAAATTAGAACTAGAATCACTCAAAAATATTGGACAAGTTGATGAATTTCTGACAGATAAATTGGACAAGTTGACTCAAATTGTTCAAAGTTTGCTGCCTAATACCTCAGACAATTCTAAAGCAAGAAACTCACATTCTGTGGACAATATTGCAACATATTCAAGTGCACACCATGATGAAGATAGTACTGATGAAGATGGTGATGAAGATGTTGCTGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.06

Weight (kDa)

4.58

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000450)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20080 FvH4_1g23272 FvH4_1g24190 FvH4_1g24191 FvH4_2g16992 FvH4_4g20600 FvH4_5g37430 FvH4_6g13850 FvH4_6g23331 FvH4_7g07732
prunus_persica Prupe.2G062800_v2.0.a1 Prupe.7G020400_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0159341 RchiOBHm_Chr3g0461151 RchiOBHm_Chr3g0471341 RchiOBHm_Chr5g0079051
rosa_laevigata RLG00000013771 RLG00000016694 RLG00000019616 RLG00000020143 RLG00000022642 RLG00000030165
rosa_multiflora Rmu_sc0000058.1_g000010 Rmu_sc0000898.1_g000045 Rmu_sc0001200.1_g000007 Rmu_sc0001200.1_g000008 Rmu_sc0001323.1_g000001 Rmu_sc0002194.1_g000008 Rmu_sc0002206.1_g000017 Rmu_sc0002230.1_g000001 Rmu_sc0002280.1_g000001 Rmu_sc0003047.1_g000022 Rmu_sc0003623.1_g000007 Rmu_sc0003835.1_g000012
rosa_roxburghii Rroxscaffold_1G00019590 Rroxscaffold_1G00029010 Rroxscaffold_1G00029250 Rroxscaffold_1G00031650 Rroxscaffold_1G00031660 Rroxscaffold_1G00052850 Rroxscaffold_2G00144000 Rroxscaffold_3G00231810 Rroxscaffold_3G00245070 Rroxscaffold_3G00268690 Rroxscaffold_4G00312920 Rroxscaffold_5G00350060 Rroxscaffold_6G00412590 Rroxscaffold_6G00412600 Rroxscaffold_6G00420320 Rroxscaffold_7G00192970 Rroxscaffold_7G00197810 Rroxscaffold_7G00208250
rosa_rugosa Rorug01G0074000 Rorug01G0273600.1 Rorug01G0273700 Rorug03G0275700 Rorug04G0060600 Rorug04G0063100 Rorug04G0170400 Rorug05G0185600 Rorug05G0224200 Rorug05G0234600
rosa_samantha Rh1CG227300 Rh1DG133300 Rh1DG133400 Rh2AG004600 Rh2BG038900 Rh3BG045400 Rh3BG359100 Rh3BG359200 Rh3CG044000 Rh3CG355700 Rh4CG188000 Rh4CG217400 Rh4DG018500 Rh4DG092800 Rh4DG128600 Rh4DG141700 Rh5CG305800 Rh5DG275100 Rh5DG430600 Rh6DG316100
rosa_wichuraiana Rw0G005510 Rw0G010440 Rw0G010450 Rw1G018670 Rw3G028280 Rw4G010530 Rw4G010930 Rw4G012110 Rw4G012720 Rw5G007170 Rw7G023020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 56, 61
AclWI GGATC 1 cut(s) 31
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 2 cut(s) 5, 262
AgsI TTSAA 2 cut(s) 161, 237
Alw21I GWGCWC 1 cut(s) 244
Alw44I GTGCAC 1 cut(s) 240
AlwI GGATC 1 cut(s) 31
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 244
Bbv12I GWGCWC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 266
BfaI CTAG 1 cut(s) 86
BisI GCNGC 2 cut(s) 62, 170
BlsI GCNGC 2 cut(s) 63, 171
BmcAI AGTACT 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 28
Bse8I GATNNNNATC 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 28
BseMII CTCAG 1 cut(s) 195
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 244
Bsp1286I GDGCHC 1 cut(s) 244
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 23
BspACI CCGC 2 cut(s) 56, 61
BspCNI CTCAG 1 cut(s) 194
BspPI GGATC 1 cut(s) 31
BsrGI TGTACA 1 cut(s) 3
BssMI GATC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 181
BstKTI GATC 1 cut(s) 26
BstMBI GATC 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 66
Csp6I GTAC 2 cut(s) 4, 261
CviAII CATG 1 cut(s) 248
CviQI GTAC 2 cut(s) 4, 261
DdeI CTNAG 1 cut(s) 181
DpnI GATC 1 cut(s) 25
DpnII GATC 1 cut(s) 23
FaeI CATG 1 cut(s) 251
FaiI YATR 2 cut(s) 232, 249
FatI CATG 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 62, 170
Fsp4HI GCNGC 2 cut(s) 62, 170
FspBI CTAG 1 cut(s) 86
GluI GCNGC 2 cut(s) 62, 170
Hin1II CATG 1 cut(s) 251
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 4 cut(s) 29, 40, 89, 148
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 3 cut(s) 147, 217, 242
Hpy188I TCNGA 3 cut(s) 28, 126, 184
Hpy8I GTNNAC 3 cut(s) 147, 217, 242
HpyCH4V TGCA 2 cut(s) 227, 242
HpyF3I CTNAG 1 cut(s) 181
Hsp92II CATG 1 cut(s) 251
Kzo9I GATC 1 cut(s) 23
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 86
MalI GATC 1 cut(s) 25
MboI GATC 1 cut(s) 23
MboII GAAGA 3 cut(s) 266, 281, 293
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 5 cut(s) 77, 119, 134, 153, 187
MlyI GAGTC 1 cut(s) 142
MnlI CCTC 1 cut(s) 190
MslI CAYNNNNRTG 1 cut(s) 249
NdeII GATC 1 cut(s) 23
NlaIII CATG 1 cut(s) 251
PfeI GAWTC 3 cut(s) 29, 40, 89
PkrI GCNGC 2 cut(s) 63, 171
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
RsaI GTAC 2 cut(s) 5, 262
RsaNI GTAC 2 cut(s) 4, 261
RseI CAYNNNNRTG 1 cut(s) 249
SatI GCNGC 2 cut(s) 62, 170
Sau3AI GATC 1 cut(s) 23
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 142
SduI GDGCHC 1 cut(s) 244
SetI ASST 1 cut(s) 182
SgeI CNNG 7 cut(s) 77, 98, 122, 154, 210, 249, 260
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 5 cut(s) 77, 119, 134, 153, 187
SsiI CCGC 2 cut(s) 56, 61
SspI AATATT 2 cut(s) 103, 223
SspMI CTAG 1 cut(s) 86
TasI AATT 5 cut(s) 77, 119, 134, 153, 187
TatI WGTACW 2 cut(s) 3, 260
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 3 cut(s) 29, 40, 89
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 5 cut(s) 32, 132, 267, 282, 294
VneI GTGCAC 1 cut(s) 240
XapI RAATTY 1 cut(s) 119
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.