Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00802

Orthogroup ID

OG0013010

Physical Location & Seq

Genomic Coordinates Reverse (-)

4350 .. 6128

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G018140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGAAGACCCACAAGGCTTCGTCAAAGCGGTTCAGGGTGACAGGTAGAGGGAAAATAGTTCGAAGGAGAGCTCGAAAGCAACATTTACTTGTGAAGAAGAATGCCAAGAGGAGAAACCGGCTCTCCAAAATGCATGCAGTTAGTCGAAGTGACTATGACAATGTGATTGGAGCATTGCCATATCTGAAAGTAAATAGGAAGGCAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0009507 GO:0009536 GO:0015934 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L35p

Protein Analysis

69

Amino Acids

8.11

Weight (kDa)

12.0

Isoelectric Point (pI)

72.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L35p	PF01632	1 - 55	2.1e-18	Ribosomal protein L35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013010)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24090
fragaria_vesca	FvH4_4g09690 FvH4_4g09690
malus_domestica	MD04G1052200.v1.1
prunus_persica	Prupe.1G102100_v2.0.a1
pyrus_communis	pycom04g04590
rosa_chinensis	RchiOBHm_Chr4g0405501
rosa_laevigata	RLG00000008838
rosa_multiflora	Rmu_sc0003981.1_g000024 Rmu_sc0005023.1_g000021
rosa_roxburghii	Rroxscaffold_5G00350000
rosa_rugosa	Rorug04G0060600
rosa_samantha	Rh4AG132300 Rh4BG127200 Rh4CG139800 Rh4DG126600
rosa_wichuraiana	Rw0G018140 Rw4G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	28
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw21I	GWGCWC	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	49
AsuII	TTCGAA	1 cut(s)	61
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	61
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bse118I	RCCGGY	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	73
BsiSI	CCGG	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	106
Bsp119I	TTCGAA	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	117
BstBI	TTCGAA	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	135
BstNSI	RCATGY	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	11
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	117
CviAII	CATG	1 cut(s)	134
CviJI	RGCY	3 cut(s)	17, 71, 121
CviKI_1	RGCY	3 cut(s)	17, 71, 121
Ecl136II	GAGCTC	1 cut(s)	71
Eco24I	GRGCYC	1 cut(s)	73
Eco53kI	GAGCTC	1 cut(s)	71
EcoICRI	GAGCTC	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	135
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	1 cut(s)	137
FaiI	YATR	3 cut(s)	135, 156, 181
FatI	CATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	73
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	1 cut(s)	137
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	57, 193
HpyCH4V	TGCA	2 cut(s)	133, 137
Hsp92II	CATG	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	3 cut(s)	19, 27, 131
MaeIII	GTNAC	2 cut(s)	37, 149
MboII	GAAGA	3 cut(s)	16, 106, 109
MhlI	GDGCHC	1 cut(s)	73
MnlI	CCTC	2 cut(s)	41, 102
Mph1103I	ATGCAT	1 cut(s)	135
MspI	CCGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	37, 149
NsiI	ATGCAT	1 cut(s)	135
NspI	RCATGY	1 cut(s)	137
NspV	TTCGAA	1 cut(s)	61
PaeI	GCATGC	1 cut(s)	137
PctI	GAATGC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	73
SacI	GAGCTC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	2 cut(s)	46, 73
SfuI	TTCGAA	1 cut(s)	61
SgeI	CNNG	8 cut(s)	25, 46, 54, 84, 101, 118, 130, 146
SphI	GCATGC	1 cut(s)	137
SsiI	CCGC	1 cut(s)	28
SstI	GAGCTC	1 cut(s)	73
TaqI	TCGA	3 cut(s)	61, 73, 145
TseFI	GTSAC	2 cut(s)	37, 149
Tsp45I	GTSAC	2 cut(s)	37, 149
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.