AT2G24350

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004676
Physical Location & Seq
Forward (+)
10361054 .. 10364492
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24350.1

Sequence Viewer

Length: 1614 bp
ATGACTAAAGCAGTAGATGGACTCACATTTCCGATGTCGAGAGTATCGGAGTCAGCTTCTCGACTTAAAACCATCATTTCCGATATGCTTCCTCGCTTTACTGACGATTACTCCGACGACCTCTCTGAGTATGTTACGGTGCTTGTTTGTAATGGAAAGAGTCAGAGACAGGCAAGCGAAGATTTGGAGGCATTTCTTAAGGAGCAATCTTGGAAATTTGTTGTCTGCTTGTGGGAGCTTCTAGTGAAGTACTTCTCTCAAAGTAATTCTGCTTCTGGACCTAAGACTGATGTTGACTTTGGCTCTAATGATACTCTAATCAAACAAGGTTTAAGCTCCAGAAAGTATGATGATTATGATTGCAAAGCTGCCGATGGTACTAATTCGATGAATGAACAGCTGATATCAGTTACTGCTCCCATAGATGACATTGAGGCTCCTGTATCACCAAAAGTTGAAAAAATGAAGATGTCACGACAAGAGCTCATTGATAGCCCTTGTACAAGGGCACGGCGAAGAAAGAAAGAAAATTGGAACTCGTCTGGTTACTCTAGAAAAGTACTGCGCTCTGTCATTGTTTCAGCCACTCAGCAACCATGTGATAGGAATCCTGCTAAATATGAAAAGTCTATGAATGAAAGGAGTAGAACCCTAAAGAAGCGCCCATACTCACCAGAAAGAGAATTGGATTCTCGGTTTGCTCCTTCAGGAAGAGCTGTGTCTGCAAGATACCATGATGCATCTCTACACCAAGAAACGGAGCCTCATGTTAGTGTTTGGGATCGTTTGGGCCGAGCAAGCTCCGAATGTGTTCTTGACACAGAAAGCCGTACATTGTCTAAGTTTGGTATCCAGACACGTGAAACAAAAGTGCATCAGCAGCATGGACCAGTATTTCCTGCAGCGTATAGTGAACAACATAGCGAGATATTTCAAAGAGAAGTTCTTGCAGTTGGTTACAGGCACAGAGTTCCCCAATTCGATAAAGATAGGAAACCCAAGAGTGAAACTATCACATCCACTGAACCGCATATTGCATATAACCTCAGCAGAAAGAGACGTTATGGCATGGTCAGCCCCAATTCAGGAGAGTTTAGCTATGTTCCCCAATATAAGCAAGCTGAACAAGATTTTGAAAAGCCAAGCCTGCTCTCCCATCAGTCAACAAAGCAAGATATTTTTTCAGAAATAAAGAACGTGAAAGAAAAGATGCAAGAACTAGAACTCCGAATTATTCAATCAAAGCAGTTGAAGAAACAGAAAGTTGAAGAACGCAAACCCTCACCACAATCTGGCGAATCACAGTATCAGGAAGATGTCTCAGAATCAAGAGTCATACATGTTACTAACGTATACTATGCAGCAAAGAAAGAAGCTATATCAATGTTCTTCAGCAGCAAGTGTGGAGCTGTCCAAAATGTTATAGTTGTAACTGATCCAGTAACTCGCCATCCAAAGGGTACTGCTTTTGTGACTTTTGCTACAAAGGAGTCAGTTGGCAAAGCAGTAGCTCTGAGCGGCACAATGTTCTATTCAAGACCCATCAAGGTTCGCATGCACGTGATAGCTTCTGGAGTAGTGTCAGCAGCACCACAGATAGTTACTGGAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWI RRM_1

Protein Analysis

537

Amino Acids

60.8

Weight (kDa)

9.2

Isoelectric Point (pI)

58.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 447 - 516 7.3e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1292
AccBSI CCGCTC 1 cut(s) 1518
AccI GTMKAC 1 cut(s) 1353
AciI CCGC 2 cut(s) 1028, 1518
AclWI GGATC 2 cut(s) 789, 1430
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 690, 1375
AcvI CACGTG 2 cut(s) 860, 1561
AfaI GTAC 6 cut(s) 251, 379, 502, 561, 832, 1462
AfiI CCNNNNNNNGG 4 cut(s) 757, 1085, 1292, 1456
AflII CTTAAG 1 cut(s) 197
AflIII ACRYGT 2 cut(s) 857, 1339
AgsI TTSAA 7 cut(s) 458, 935, 1136, 1238, 1252, 1268, 1536
AloI GAACNNNNNNTCC 2 cut(s) 1209, 1241
Alw21I GWGCWC 1 cut(s) 486
Alw26I GTCTC 3 cut(s) 160, 1051, 1324
AlwI GGATC 2 cut(s) 789, 1430
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 790
ApeKI GCWGC 6 cut(s) 368, 880, 902, 1361, 1395, 1586
ApoI RAATTY 1 cut(s) 215
Asp700I GAANNNNTTC 2 cut(s) 251, 810
AspLEI GCGC 2 cut(s) 567, 663
AspS9I GGNCC 3 cut(s) 278, 790, 887
AsuHPI GGTGA 3 cut(s) 438, 663, 1275
AvaII GGWCC 2 cut(s) 278, 887
BaeGI GKGCMC 1 cut(s) 511
BanII GRGCYC 1 cut(s) 486
BarI GAAGNNNNNNTAC 4 cut(s) 256, 288, 650, 682
BbrPI CACGTG 2 cut(s) 860, 1561
Bbv12I GWGCWC 1 cut(s) 486
BbvCI CCTCAGC 1 cut(s) 1046
BbvI GCAGC 6 cut(s) 355, 892, 914, 1373, 1407, 1598
BccI CCATC 6 cut(s) 11, 80, 368, 1164, 1458, 1550
BceAI ACGGC 2 cut(s) 527, 813
BciVI GTATCC 1 cut(s) 860
BcoDI GTCTC 3 cut(s) 160, 1051, 1324
BfaI CTAG 3 cut(s) 242, 552, 1220
BfmI CTRYAG 1 cut(s) 900
BfoI RGCGCY 1 cut(s) 664
BfrI CTTAAG 1 cut(s) 197
BfuI GTATCC 1 cut(s) 860
BisI GCNGC 7 cut(s) 369, 881, 903, 1362, 1396, 1519, 1587
BlsI GCNGC 7 cut(s) 370, 882, 904, 1363, 1397, 1520, 1588
BmcAI AGTACT 2 cut(s) 251, 561
Bme18I GGWCC 2 cut(s) 278, 887
BmgT120I GGNCC 3 cut(s) 278, 790, 887
BmiI GGNNCC 2 cut(s) 438, 762
BmsI GCATC 4 cut(s) 727, 749, 883, 1200
BpmI CTGGAG 2 cut(s) 322, 1593
Bpu10I CCTNAGC 1 cut(s) 1046
BsaAI YACGTR 2 cut(s) 860, 1561
BsaBI GATNNNNATC 1 cut(s) 606
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 1209, 1239
Bsc4I CCNNNNNNNGG 4 cut(s) 757, 1085, 1292, 1456
Bse1I ACTGG 3 cut(s) 890, 1439, 1609
Bse8I GATNNNNATC 1 cut(s) 606
BseGI GGATG 2 cut(s) 1016, 1450
BseJI GATNNNNATC 1 cut(s) 606
BseLI CCNNNNNNNGG 4 cut(s) 757, 1085, 1292, 1456
BseMII CTCAG 5 cut(s) 117, 602, 1060, 1335, 1505
BseNI ACTGG 3 cut(s) 890, 1439, 1609
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 6 cut(s) 355, 892, 914, 1373, 1407, 1598
BshFI GGCC 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 486
BslI CCNNNNNNNGG 4 cut(s) 757, 1085, 1292, 1456
BsmAI GTCTC 3 cut(s) 160, 1051, 1324
BsmBI CGTCTC 1 cut(s) 1051
BsnI GGCC 1 cut(s) 792
Bsp1286I GDGCHC 2 cut(s) 486, 511
Bsp1407I TGTACA 1 cut(s) 500
Bsp143I GATC 2 cut(s) 781, 1435
BspACI CCGC 2 cut(s) 1028, 1518
BspANI GGCC 1 cut(s) 792
BspCNI CTCAG 5 cut(s) 118, 601, 1059, 1334, 1506
BspLI GGNNCC 2 cut(s) 438, 762
BspMAI CTGCAG 1 cut(s) 904
BspPI GGATC 2 cut(s) 789, 1430
BspQI GCTCTTC 1 cut(s) 706
BspTI CTTAAG 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 1518
BsrGI TGTACA 1 cut(s) 500
BsrI ACTGG 3 cut(s) 890, 1439, 1609
BssMI GATC 2 cut(s) 781, 1435
BssNAI GTATAC 1 cut(s) 1354
Bst1107I GTATAC 1 cut(s) 1354
Bst4CI ACNGT 2 cut(s) 139, 1305
Bst6I CTCTTC 1 cut(s) 706
BstAFI CTTAAG 1 cut(s) 197
BstAUI TGTACA 1 cut(s) 500
BstBAI YACGTR 2 cut(s) 860, 1561
BstC8I GCNNGC 5 cut(s) 175, 799, 1119, 1148, 1556
BstDEI CTNAG 7 cut(s) 126, 282, 588, 840, 1046, 1321, 1514
BstF5I GGATG 2 cut(s) 1016, 1450
BstH2I RGCGCY 1 cut(s) 664
BstHHI GCGC 2 cut(s) 567, 663
BstKTI GATC 2 cut(s) 784, 1438
BstMAI GTCTC 3 cut(s) 160, 1051, 1324
BstMBI GATC 2 cut(s) 781, 1435
BstMWI GCNNNNNNNGC 5 cut(s) 722, 798, 880, 1074, 1147
BstNSI RCATGY 2 cut(s) 1343, 1558
BstSFI CTRYAG 1 cut(s) 900
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 6 cut(s) 355, 892, 914, 1373, 1407, 1598
BstZ17I GTATAC 1 cut(s) 1354
BsuI GTATCC 1 cut(s) 860
BsuRI GGCC 1 cut(s) 792
BtsCI GGATG 2 cut(s) 1016, 1450
BtsIMutI CAGTG 1 cut(s) 1020
Cac8I GCNNGC 5 cut(s) 175, 799, 1119, 1148, 1556
CaiI CAGNNNCTG 1 cut(s) 413
CfoI GCGC 2 cut(s) 567, 663
Cfr13I GGNCC 3 cut(s) 278, 790, 887
Csp6I GTAC 6 cut(s) 250, 378, 501, 560, 831, 1461
CviAII CATG 7 cut(s) 597, 734, 767, 884, 1069, 1340, 1555
CviQI GTAC 6 cut(s) 250, 378, 501, 560, 831, 1461
DdeI CTNAG 7 cut(s) 126, 282, 588, 840, 1046, 1321, 1514
DpnI GATC 2 cut(s) 783, 1437
DpnII GATC 2 cut(s) 781, 1435
Eam1104I CTCTTC 1 cut(s) 706
EarI CTCTTC 1 cut(s) 706
Ecl136II GAGCTC 1 cut(s) 484
Eco24I GRGCYC 1 cut(s) 486
Eco32I GATATC 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 278, 887
Eco53kI GAGCTC 1 cut(s) 484
Eco57I CTGAAG 2 cut(s) 690, 1375
Eco72I CACGTG 2 cut(s) 860, 1561
EcoICRI GAGCTC 1 cut(s) 484
EcoRV GATATC 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 1051
FaeI CATG 7 cut(s) 600, 737, 770, 887, 1072, 1343, 1558
FatI CATG 7 cut(s) 596, 733, 766, 883, 1068, 1339, 1554
FblI GTMKAC 1 cut(s) 1353
Fnu4HI GCNGC 7 cut(s) 369, 881, 903, 1362, 1396, 1519, 1587
FokI GGATG 2 cut(s) 1003, 1437
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 7 cut(s) 369, 881, 903, 1362, 1396, 1519, 1587
FspBI CTAG 3 cut(s) 242, 552, 1220
GlaI GCGC 2 cut(s) 566, 662
GluI GCNGC 7 cut(s) 369, 881, 903, 1362, 1396, 1519, 1587
GsuI CTGGAG 2 cut(s) 322, 1593
HaeII RGCGCY 1 cut(s) 664
HaeIII GGCC 1 cut(s) 792
HhaI GCGC 2 cut(s) 567, 663
Hin1II CATG 7 cut(s) 600, 737, 770, 887, 1072, 1343, 1558
Hin6I GCGC 2 cut(s) 565, 661
HinP1I GCGC 2 cut(s) 565, 661
HincII GTYRAC 2 cut(s) 295, 1164
HindII GTYRAC 2 cut(s) 295, 1164
HinfI GANTC 9 cut(s) 21, 50, 160, 607, 689, 1298, 1325, 1332, 1490
HphI GGTGA 3 cut(s) 438, 663, 1275
Hpy166II GTNNAC 4 cut(s) 295, 914, 1164, 1354
Hpy8I GTNNAC 4 cut(s) 295, 914, 1164, 1354
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 714
HpyCH4III ACNGT 2 cut(s) 139, 1305
HpyCH4IV ACGT 5 cut(s) 859, 1060, 1197, 1350, 1560
HpyF10VI GCNNNNNNNGC 5 cut(s) 722, 798, 880, 1074, 1147
HpyF3I CTNAG 7 cut(s) 126, 282, 588, 840, 1046, 1321, 1514
HpySE526I ACGT 5 cut(s) 859, 1060, 1197, 1350, 1560
Hsp92II CATG 7 cut(s) 600, 737, 770, 887, 1072, 1343, 1558
HspAI GCGC 2 cut(s) 565, 661
Kzo9I GATC 2 cut(s) 781, 1435
LguI GCTCTTC 1 cut(s) 706
LmnI GCTCC 9 cut(s) 202, 235, 341, 421, 442, 706, 760, 806, 1406
Lsp1109I GCAGC 6 cut(s) 355, 892, 914, 1373, 1407, 1598
LweI GCATC 4 cut(s) 727, 749, 883, 1200
MaeI CTAG 3 cut(s) 242, 552, 1220
MaeII ACGT 5 cut(s) 859, 1060, 1197, 1350, 1560
MalI GATC 2 cut(s) 783, 1437
MbiI CCGCTC 1 cut(s) 1518
MboI GATC 2 cut(s) 781, 1435
MboII GAAGA 8 cut(s) 191, 478, 528, 723, 1264, 1280, 1325, 1381
MhlI GDGCHC 2 cut(s) 486, 511
MluCI AATT 8 cut(s) 215, 265, 382, 529, 683, 977, 1081, 1230
MlyI GAGTC 5 cut(s) 15, 59, 169, 1341, 1499
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 7 cut(s) 102, 131, 181, 427, 774, 1055, 1291
Mph1103I ATGCAT 1 cut(s) 742
MroXI GAANNNNTTC 2 cut(s) 251, 810
MseI TTAA 4 cut(s) 66, 198, 332, 1612
MslI CAYNNNNRTG 2 cut(s) 771, 1559
MspA1I CMGCKG 1 cut(s) 400
MspCI CTTAAG 1 cut(s) 197
MwoI GCNNNNNNNGC 5 cut(s) 722, 798, 880, 1074, 1147
NdeII GATC 2 cut(s) 781, 1435
NlaIII CATG 7 cut(s) 600, 737, 770, 887, 1072, 1343, 1558
NlaIV GGNNCC 2 cut(s) 438, 762
NmeAIII GCCGAG 1 cut(s) 818
NmuCI GTSAC 2 cut(s) 471, 1471
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 2 cut(s) 1343, 1558
PaeI GCATGC 1 cut(s) 1558
PciI ACATGT 1 cut(s) 1339
PciSI GCTCTTC 1 cut(s) 706
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 790
PdmI GAANNNNTTC 2 cut(s) 251, 810
PfeI GAWTC 4 cut(s) 607, 689, 1298, 1325
PflMI CCANNNNNTGG 1 cut(s) 1292
PkrI GCNGC 7 cut(s) 370, 882, 904, 1363, 1397, 1520, 1588
PleI GAGTC 5 cut(s) 15, 58, 168, 1340, 1498
PmaCI CACGTG 2 cut(s) 860, 1561
PmlI CACGTG 2 cut(s) 860, 1561
PpsI GAGTC 5 cut(s) 15, 58, 168, 1340, 1498
Ppu21I YACGTR 2 cut(s) 860, 1561
PscI ACATGT 1 cut(s) 1339
Psp124BI GAGCTC 1 cut(s) 486
PspCI CACGTG 2 cut(s) 860, 1561
PspN4I GGNNCC 2 cut(s) 438, 762
PspPI GGNCC 3 cut(s) 278, 790, 887
PstI CTGCAG 1 cut(s) 904
PstNI CAGNNNCTG 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 400
RsaI GTAC 6 cut(s) 251, 379, 502, 561, 832, 1462
RsaNI GTAC 6 cut(s) 250, 378, 501, 560, 831, 1461
RseI CAYNNNNRTG 2 cut(s) 771, 1559
SacI GAGCTC 1 cut(s) 486
SapI GCTCTTC 1 cut(s) 706
SaqAI TTAA 4 cut(s) 66, 198, 332, 1612
SatI GCNGC 7 cut(s) 369, 881, 903, 1362, 1396, 1519, 1587
Sau3AI GATC 2 cut(s) 781, 1435
Sau96I GGNCC 3 cut(s) 278, 790, 887
ScaI AGTACT 2 cut(s) 251, 561
SchI GAGTC 5 cut(s) 15, 59, 169, 1341, 1499
SduI GDGCHC 2 cut(s) 486, 511
SfaNI GCATC 4 cut(s) 727, 749, 883, 1200
SfcI CTRYAG 1 cut(s) 900
SinI GGWCC 2 cut(s) 278, 887
SmiMI CAYNNNNRTG 2 cut(s) 771, 1559
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
SphI GCATGC 1 cut(s) 1558
Sse9I AATT 8 cut(s) 215, 265, 382, 529, 683, 977, 1081, 1230
SsiI CCGC 2 cut(s) 1028, 1518
SspMI CTAG 3 cut(s) 242, 552, 1220
SstI GAGCTC 1 cut(s) 486
TaaI ACNGT 2 cut(s) 139, 1305
TaiI ACGT 5 cut(s) 862, 1063, 1200, 1353, 1563
TaqI TCGA 4 cut(s) 38, 61, 386, 981
TasI AATT 8 cut(s) 215, 265, 382, 529, 683, 977, 1081, 1230
TatI WGTACW 3 cut(s) 249, 500, 559
TauI GCSGC 1 cut(s) 1521
TfiI GAWTC 4 cut(s) 607, 689, 1298, 1325
Tru1I TTAA 4 cut(s) 66, 198, 332, 1612
Tru9I TTAA 4 cut(s) 66, 198, 332, 1612
TscAI CASTG 1 cut(s) 1027
TseFI GTSAC 2 cut(s) 471, 1471
TseI GCWGC 6 cut(s) 368, 880, 902, 1361, 1395, 1586
Tsp45I GTSAC 2 cut(s) 471, 1471
TspDTI ATGAA 6 cut(s) 404, 408, 479, 636, 647, 651
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 1 cut(s) 1027
Van91I CCANNNNNTGG 1 cut(s) 1292
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 278, 887
XapI RAATTY 1 cut(s) 215
XbaI TCTAGA 1 cut(s) 551
XceI RCATGY 2 cut(s) 1343, 1558
XmiI GTMKAC 1 cut(s) 1353
XmnI GAANNNNTTC 2 cut(s) 251, 810
XspI CTAG 3 cut(s) 242, 552, 1220
ZrmI AGTACT 2 cut(s) 251, 561
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.