Rorug02G0417800

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004676
Physical Location & Seq
Reverse (-)
53725015 .. 53725459
445 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0417800.1

Sequence Viewer

Length: 276 bp
ATGGAAAACGAGACAGTAGTAGTGGCTGAAACTGCGGGGTCGATAAAAGTGGCGGTGGTAGTATGCCTGTTGAGAGGCCAAAACGTGCTCTTGGGACGGCGCCGCTCCTCTCTGGGAGATTCCACCTTTTCCCTTCCCAGTGGCCACCTTGAGTTTGGAGAGAGCTTTGAGGAGTGTGCAGCAAGGGAACTGAAGGAAGAAATTGATTTAGACATTGGCAAGATAGAATTGCTAACTGTGACCAACAACCTGTTCCTAGATGAAGCCAAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWI RRM_1

Protein Analysis

91

Amino Acids

9.92

Weight (kDa)

4.59

Isoelectric Point (pI)

52.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 16 - 81 2.6e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 105
AciI CCGC 3 cut(s) 35, 53, 103
AcoI YGGCCR 1 cut(s) 142
AcuI CTGAAG 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 236, 268
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 5
AoxI GGCC 2 cut(s) 76, 142
ApeKI GCWGC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 102
BalI TGGCCA 1 cut(s) 144
BanI GGYRCC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 2 cut(s) 103, 180
BlsI GCNGC 2 cut(s) 104, 181
BmiI GGNNCC 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
BpuEI CTTGAG 1 cut(s) 170
BsaHI GRCGYC 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 138
BseNI ACTGG 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 97, 185
BseXI GCAGC 1 cut(s) 191
BsgI GTGCAG 1 cut(s) 198
BshFI GGCC 2 cut(s) 78, 144
BshNI GGYRCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 90
BslFI GGGAC 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 5
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 2 cut(s) 78, 144
Bsp1286I GDGCHC 1 cut(s) 90
BspACI CCGC 3 cut(s) 35, 53, 103
BspANI GGCC 2 cut(s) 78, 144
BspLI GGNNCC 1 cut(s) 101
BspT107I GGYRCC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 16, 238
BstACI GRCGYC 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 1 cut(s) 102
BstMAI GTCTC 1 cut(s) 5
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 191
BsuRI GGCC 2 cut(s) 78, 144
BtsIMutI CAGTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 102
CviJI RGCY 5 cut(s) 26, 78, 144, 165, 266
CviKI_1 RGCY 5 cut(s) 26, 78, 144, 165, 266
DinI GGCGCC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 212
EgeI GGCGCC 1 cut(s) 101
EheI GGCGCC 1 cut(s) 101
FaiI YATR 2 cut(s) 64, 274
FaqI GGGAC 1 cut(s) 108
FauI CCCGC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 103, 180
Fsp4HI GCNGC 2 cut(s) 103, 180
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 101
GluI GCNGC 2 cut(s) 103, 180
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 2 cut(s) 78, 144
HhaI GCGC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 100
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HinfI GANTC 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 143, 187
HpyCH4III ACNGT 2 cut(s) 16, 238
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 179
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 100
HspAI GCGC 1 cut(s) 100
KasI GGCGCC 1 cut(s) 99
LmnI GCTCC 1 cut(s) 110
LpnPI CCDG 4 cut(s) 80, 98, 151, 263
Lsp1109I GCAGC 1 cut(s) 191
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 238
MbiI CCGCTC 1 cut(s) 105
MboII GAAGA 1 cut(s) 209
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 144
MluCI AATT 2 cut(s) 201, 227
MluNI TGGCCA 1 cut(s) 144
Mly113I GGCGCC 1 cut(s) 100
MnlI CCTC 3 cut(s) 68, 118, 163
Mox20I TGGCCA 1 cut(s) 144
MscI TGGCCA 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 32
NarI GGCGCC 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 2 cut(s) 104, 181
PluTI GGCGCC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 101
SatI GCNGC 2 cut(s) 103, 180
SduI GDGCHC 1 cut(s) 90
SetI ASST 5 cut(s) 87, 128, 150, 167, 252
SfoI GGCGCC 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 2 cut(s) 201, 227
SsiI CCGC 3 cut(s) 35, 53, 103
SspDI GGCGCC 1 cut(s) 99
SspMI CTAG 1 cut(s) 257
TaaI ACNGT 2 cut(s) 16, 238
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 41
TasI AATT 2 cut(s) 201, 227
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 145
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 145
XcmI CCANNNNNNNNNTGG 1 cut(s) 152
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.