Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004676

Physical Location & Seq

Genomic Coordinates Reverse (-)

53713488 .. 53719292

Gene Structure 5805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0417700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAGTTCATGTGGGTCTCTTTGATTGTACTATTAAGTCTGCTTGCTGGTCCTACACCTATACTCTCAGATTCCTCTTTGAGTTCAAATGGGTTCTCAGAAATCCCCAAAAAGTTGCTCACTTTAGCCCAGAAACCTGAGCTGTTTGAGTGGATGGTGGGCATCAGAAGGAAGATACATGAAAACCCAGAACTAGGTTATGAGGAATTTGAGACCAGTAAGCTGATCAGAGCAGAATTGGACAAGATGGGTATTGCATATAAGTACCCAGTTGCAGTTACTGGGGTTGTAGGTTCCATTGGGACTGGAAAGCCTCCTTTTGTTGCAATCAGAGCTGACATGGATGCTCTGGCTATGCAGGAAATGGTGGAGTGGGAGCACAAGAGTAAAATCCCTGGGAAAATGCATGGTTGTGGGCATGATGCTCATGTTGCAATGCTTCTTGGTGCTGCAAAGATCCTTAAAGAGCATGAGAAAGATTTACAGGGAACAATTGTTCTTGTATTTCAACCAGCAGAGGAAGGAGGAGGTGGAGCTAAGAAAATATTAGATGCCGGAGTATTAGACAATGTTACTGCTATTTTTGGGCTGCATGTTGCCCACCATATTCCTTTAGCTGAAGTAGCCTCTAGACCTGGCCCCTTTTTTGCTGGGAGTGGCTTCTTTGAAGCAACAATAAGTGGAAAAGGAGGTCATGCAGCCCTTCCTCATCATGCGGTTGATCCAATACTCGCGGTTTCAAATGTGATTTCTAGCTTACAACATATTGTCTCACGTGAAGTTGATCCACTCGACTCTCAGGTAGTGACAGTTGGAAAAGTTCAAGGAGGTGAAGCATTCAATGTCATTCCAGATTCTGTAACAATTGGTGGCACTTTCCGTGCCTTTTCAAAGGAGAGCTTATTGCAACTCAAACAGCGCATAGAGAAGGTTATAACAGGGCAGGCTGCTGTACAAAGATGCAATGCAACGGTCAATTTCTTTGAAGATGAGAAACCTTTGTTCCCCCCGACAGTAAACCATAAGGAATTGCACAAACACTTTCAAAATGTCGCAGGAGATATGCTTGGCATGCACAAAGTCAAAGACCACCAGCCATTAATGGGATCCGAGGACTTTGCATATTACCAAGAGGCAATAACTGGATTCTTCTTCTTTCTTGGAATGAAGGATGACAGGCTTGGATATCTGGATACACCACACTCACCTTACTTTCGGATCAATGAGGATGCACTTCCTTATGGTGCTGCACTTCATGCTTCTTTGGCTGTTAGGTATTTGATTGAAACTCAACAGGAGGTTCCTTTGCCAGAACAGCAAATTTGTGATGAGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

445

Amino Acids

48.72

Weight (kDa)

5.72

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	109 - 423	1.9e-42	Peptidase family M20/M25/M40
M20_dimer	PF07687	218 - 314	2.3e-12	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24350 AT2G24350
fragaria_vesca	FvH4_5g28080 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250
malus_domestica	MD17G1145400.v1.1
prunus_persica	Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1
pyrus_communis	pycom17g13830
rosa_chinensis	RchiOBHm_Chr2g0150031
rosa_laevigata	RLG00000020461
rosa_multiflora	Rmu_sc0001169.1_g000009 Rmu_sc0001169.1_g000010 Rmu_sc0009445.1_g000019 Rmu_sc0010769.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097500
rosa_rugosa	Rorug02G0417700 Rorug02G0417700 Rorug02G0417700 Rorug02G0417800
rosa_samantha	Rh2AG477400 Rh2BG489400 Rh2CG463200 Rh2DG498400
rosa_wichuraiana	Rw2G038930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	935
AccII	CGCG	1 cut(s)	734
AciI	CCGC	2 cut(s)	716, 734
AclWI	GGATC	6 cut(s)	451, 716, 779, 1101, 1114, 1226
AcsI	RAATTY	2 cut(s)	206, 1320
AcuI	CTGAAG	1 cut(s)	639
AcvI	CACGTG	1 cut(s)	776
AfaI	GTAC	3 cut(s)	30, 266, 954
AfiI	CCNNNNNNNGG	2 cut(s)	194, 1103
AjnI	CCWGG	2 cut(s)	394, 634
AloI	GAACNNNNNNTCC	2 cut(s)	480, 512
AluBI	AGCT	7 cut(s)	142, 223, 335, 536, 617, 756, 900
AluI	AGCT	7 cut(s)	142, 223, 335, 536, 617, 756, 900
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	22, 206, 775
AlwI	GGATC	6 cut(s)	451, 716, 779, 1101, 1114, 1226
AlwNI	CAGNNNCTG	2 cut(s)	281, 857
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	5 cut(s)	449, 589, 698, 947, 1247
ApoI	RAATTY	2 cut(s)	206, 1320
AseI	ATTAAT	1 cut(s)	1100
AspLEI	GCGC	1 cut(s)	921
AspS9I	GGNCC	2 cut(s)	50, 638
AsuHPI	GGTGA	2 cut(s)	842, 1197
AvaII	GGWCC	1 cut(s)	50
BamHI	GGATCC	1 cut(s)	1106
BbrPI	CACGTG	1 cut(s)	776
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	436, 576, 710, 934, 1234
BccI	CCATC	2 cut(s)	148, 241
BcgI	CGANNNNNNTGC	2 cut(s)	1100, 1134
BciT130I	CCWGG	2 cut(s)	396, 636
BciVI	GTATCC	1 cut(s)	1186
BclI	TGATCA	1 cut(s)	225
BcoDI	GTCTC	3 cut(s)	22, 206, 775
BfaI	CTAG	3 cut(s)	194, 630, 753
BfuI	GTATCC	1 cut(s)	1186
BisI	GCNGC	5 cut(s)	450, 590, 699, 948, 1248
BlsI	GCNGC	5 cut(s)	451, 591, 700, 949, 1249
Bme1390I	CCNGG	2 cut(s)	396, 636
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	2 cut(s)	50, 638
BmiI	GGNNCC	4 cut(s)	295, 640, 1108, 1302
BmrFI	CCNGG	2 cut(s)	396, 636
BmrI	ACTGGG	2 cut(s)	263, 291
BmsI	GCATC	6 cut(s)	171, 334, 412, 541, 950, 1219
BmuI	ACTGGG	2 cut(s)	263, 291
Bpu10I	CCTNAGC	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	776
BsaI	GGTCTC	2 cut(s)	22, 206
BsaJI	CCNNGG	3 cut(s)	394, 395, 1110
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 1103
Bse1I	ACTGG	5 cut(s)	216, 269, 286, 310, 1147
Bse3DI	GCAATG	2 cut(s)	441, 970
BseBI	CCWGG	2 cut(s)	396, 636
BseDI	CCNNGG	3 cut(s)	394, 395, 1110
BseGI	GGATG	4 cut(s)	159, 349, 1177, 1234
BseLI	CCNNNNNNNGG	2 cut(s)	194, 1103
BseMI	GCAATG	2 cut(s)	441, 970
BseMII	CTCAG	4 cut(s)	81, 111, 129, 812
BseNI	ACTGG	5 cut(s)	216, 269, 286, 310, 1147
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	5 cut(s)	436, 576, 710, 934, 1234
BseYI	CCCAGC	1 cut(s)	650
BsgI	GTGCAG	1 cut(s)	1233
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	2 cut(s)	194, 1103
BsmAI	GTCTC	3 cut(s)	22, 206, 775
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	836
BsnI	GGCC	1 cut(s)	639
Bso31I	GGTCTC	2 cut(s)	22, 206
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	952
Bsp143I	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
BspACI	CCGC	2 cut(s)	716, 734
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	4 cut(s)	80, 110, 130, 811
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	4 cut(s)	295, 640, 1108, 1302
BspPI	GGATC	6 cut(s)	451, 716, 779, 1101, 1114, 1226
BspTNI	GGTCTC	2 cut(s)	22, 206
BsrDI	GCAATG	2 cut(s)	441, 970
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	5 cut(s)	216, 269, 286, 310, 1147
BssECI	CCNNGG	3 cut(s)	394, 395, 1110
BssMI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
Bst2UI	CCWGG	2 cut(s)	396, 636
Bst4CI	ACNGT	3 cut(s)	811, 973, 1015
BstAPI	GCANNNNNTGC	1 cut(s)	1256
BstAUI	TGTACA	1 cut(s)	952
BstBAI	YACGTR	1 cut(s)	776
BstC8I	GCNNGC	3 cut(s)	45, 945, 1073
BstDEI	CTNAG	5 cut(s)	67, 97, 138, 537, 798
BstF5I	GGATG	4 cut(s)	159, 349, 1177, 1234
BstFNI	CGCG	1 cut(s)	734
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	6 cut(s)	228, 459, 724, 787, 1109, 1221
BstMAI	GTCTC	3 cut(s)	22, 206, 775
BstMBI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
BstMWI	GCNNNNNNNGC	7 cut(s)	332, 431, 623, 1072, 1256, 1265, 1315
BstNI	CCWGG	2 cut(s)	396, 636
BstNSI	RCATGY	2 cut(s)	596, 1075
BstSCI	CCNGG	2 cut(s)	394, 634
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	5 cut(s)	436, 576, 710, 934, 1234
BstX2I	RGATCY	2 cut(s)	456, 1106
BstYI	RGATCY	2 cut(s)	456, 1106
BsuI	GTATCC	1 cut(s)	1186
BsuRI	GGCC	1 cut(s)	639
BtsCI	GGATG	4 cut(s)	159, 349, 1177, 1234
Cac8I	GCNNGC	3 cut(s)	45, 945, 1073
CaiI	CAGNNNCTG	2 cut(s)	281, 857
CfoI	GCGC	1 cut(s)	921
Cfr13I	GGNCC	2 cut(s)	50, 638
Csp6I	GTAC	3 cut(s)	29, 265, 953
CviQI	GTAC	3 cut(s)	29, 265, 953
DdeI	CTNAG	5 cut(s)	67, 97, 138, 537, 798
DpnI	GATC	6 cut(s)	227, 458, 723, 786, 1108, 1220
DpnII	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
Eco31I	GGTCTC	2 cut(s)	22, 206
Eco32I	GATATC	1 cut(s)	1187
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	1 cut(s)	639
Eco72I	CACGTG	1 cut(s)	776
EcoRII	CCWGG	2 cut(s)	394, 634
EcoRV	GATATC	1 cut(s)	1187
EcoT22I	ATGCAT	1 cut(s)	408
FalI	AAGNNNNNCTT	2 cut(s)	884, 916
FaqI	GGGAC	1 cut(s)	316
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	5 cut(s)	450, 590, 699, 948, 1248
FokI	GGATG	4 cut(s)	166, 356, 1184, 1241
Fsp4HI	GCNGC	5 cut(s)	450, 590, 699, 948, 1248
FspBI	CTAG	3 cut(s)	194, 630, 753
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	5 cut(s)	450, 590, 699, 948, 1248
GsaI	CCCAGC	1 cut(s)	654
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	1 cut(s)	555
HhaI	GCGC	1 cut(s)	921
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HinfI	GANTC	4 cut(s)	71, 794, 854, 1146
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	2 cut(s)	842, 1197
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	7 cut(s)	70, 100, 167, 230, 332, 1111, 1218
Hpy188III	TCNNGA	3 cut(s)	630, 851, 1190
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	5 cut(s)	162, 515, 713, 922, 1162
HpyCH4III	ACNGT	3 cut(s)	811, 973, 1015
HpyCH4IV	ACGT	1 cut(s)	775
HpyF10VI	GCNNNNNNNGC	7 cut(s)	332, 431, 623, 1072, 1256, 1265, 1315
HpyF3I	CTNAG	5 cut(s)	67, 97, 138, 537, 798
HpySE526I	ACGT	1 cut(s)	775
HspAI	GCGC	1 cut(s)	919
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
LmnI	GCTCC	2 cut(s)	376, 533
Lsp1109I	GCAGC	5 cut(s)	436, 576, 710, 934, 1234
LweI	GCATC	6 cut(s)	171, 334, 412, 541, 950, 1219
MaeI	CTAG	3 cut(s)	194, 630, 753
MaeII	ACGT	1 cut(s)	775
MaeIII	GTNAC	4 cut(s)	277, 571, 805, 859
MalI	GATC	6 cut(s)	227, 458, 723, 786, 1108, 1220
MboI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
MboII	GAAGA	4 cut(s)	184, 998, 1141, 1144
MfeI	CAATTG	2 cut(s)	492, 864
MflI	RGATCY	2 cut(s)	456, 1106
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	7 cut(s)	206, 236, 492, 864, 976, 1028, 1320
MlyI	GAGTC	1 cut(s)	788
MmeI	TCCRAC	1 cut(s)	793
Mph1103I	ATGCAT	1 cut(s)	408
MseI	TTAA	3 cut(s)	35, 462, 1100
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	396, 636
MunI	CAATTG	2 cut(s)	492, 864
Mva1269I	GAATGC	1 cut(s)	836
MvaI	CCWGG	2 cut(s)	396, 636
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	7 cut(s)	332, 431, 623, 1072, 1256, 1265, 1315
NdeII	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
NlaIV	GGNNCC	4 cut(s)	295, 640, 1108, 1302
NmuCI	GTSAC	1 cut(s)	805
NsiI	ATGCAT	1 cut(s)	408
NspI	RCATGY	2 cut(s)	596, 1075
PaeI	GCATGC	1 cut(s)	1075
PasI	CCCWGGG	1 cut(s)	395
PctI	GAATGC	1 cut(s)	836
PfeI	GAWTC	3 cut(s)	71, 854, 1146
PkrI	GCNGC	5 cut(s)	451, 591, 700, 949, 1249
PleI	GAGTC	1 cut(s)	788
PmaCI	CACGTG	1 cut(s)	776
PmlI	CACGTG	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	788
Ppu21I	YACGTR	1 cut(s)	776
PshBI	ATTAAT	1 cut(s)	1100
PsiI	TTATAA	1 cut(s)	935
Psp6I	CCWGG	2 cut(s)	394, 634
PspCI	CACGTG	1 cut(s)	776
PspFI	CCCAGC	1 cut(s)	650
PspGI	CCWGG	2 cut(s)	394, 634
PspN4I	GGNNCC	4 cut(s)	295, 640, 1108, 1302
PspPI	GGNCC	2 cut(s)	50, 638
PstNI	CAGNNNCTG	2 cut(s)	281, 857
PsuI	RGATCY	2 cut(s)	456, 1106
RsaI	GTAC	3 cut(s)	30, 266, 954
RsaNI	GTAC	3 cut(s)	29, 265, 953
RseI	CAYNNNNRTG	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	35, 462, 1100
SatI	GCNGC	5 cut(s)	450, 590, 699, 948, 1248
Sau3AI	GATC	6 cut(s)	225, 456, 721, 784, 1106, 1218
Sau96I	GGNCC	2 cut(s)	50, 638
SchI	GAGTC	1 cut(s)	788
ScrFI	CCNGG	2 cut(s)	396, 636
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	6 cut(s)	171, 334, 412, 541, 950, 1219
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	411
SphI	GCATGC	1 cut(s)	1075
Sse9I	AATT	7 cut(s)	206, 236, 492, 864, 976, 1028, 1320
SsiI	CCGC	2 cut(s)	716, 734
SspI	AATATT	1 cut(s)	546
SspMI	CTAG	3 cut(s)	194, 630, 753
StyD4I	CCNGG	2 cut(s)	394, 634
TaaI	ACNGT	3 cut(s)	811, 973, 1015
TaiI	ACGT	1 cut(s)	778
TaqI	TCGA	1 cut(s)	792
TasI	AATT	7 cut(s)	206, 236, 492, 864, 976, 1028, 1320
TatI	WGTACW	2 cut(s)	28, 952
TfiI	GAWTC	3 cut(s)	71, 854, 1146
Tru1I	TTAA	3 cut(s)	35, 462, 1100
Tru9I	TTAA	3 cut(s)	35, 462, 1100
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	5 cut(s)	449, 589, 698, 947, 1247
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	3 cut(s)	195, 1181, 1244
TspGWI	ACGGA	1 cut(s)	869
VpaK11BI	GGWCC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	1100
XapI	RAATTY	2 cut(s)	206, 1320
XbaI	TCTAGA	1 cut(s)	629
XceI	RCATGY	2 cut(s)	596, 1075
XspI	CTAG	3 cut(s)	194, 630, 753
Zsp2I	ATGCAT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.