Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001169.1

Orthogroup ID

OG0004676

Physical Location & Seq

Genomic Coordinates Forward (+)

66167 .. 66849

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001169.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggcaagtggagatattgatggtgagggagatcgaagaactcagtctaaaaatcagattacccagattgtcagtcataaatgcagtggattgcctagagagcggttacatttaccagaaagagaggccatgtctaagaatacagaattgtccgtatcaggacgccaattttctgcacagatttgtgccagtaacaagataggaactagtctgtcacaaagatctataggtgcaggatccatacgtagtaaaaaatctcggggtagtgtttgggatagattgggcaagccatgtgaagacatatctgggggactcaagagtgttgatttttacggtgccgggcataacaagcaatgtgacaaagttactagtgtcgtttggccgaaattttatctcaaaccccgacttggtgttgaggtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

140

Amino Acids

15.31

Weight (kDa)

9.69

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24350 AT2G24350
fragaria_vesca	FvH4_5g28080 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250
malus_domestica	MD17G1145400.v1.1
prunus_persica	Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1
pyrus_communis	pycom17g13830
rosa_chinensis	RchiOBHm_Chr2g0150031
rosa_laevigata	RLG00000020461
rosa_multiflora	Rmu_sc0001169.1_g000009 Rmu_sc0001169.1_g000010 Rmu_sc0009445.1_g000019 Rmu_sc0010769.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097500
rosa_rugosa	Rorug02G0417700 Rorug02G0417700 Rorug02G0417700 Rorug02G0417800
rosa_samantha	Rh2AG477400 Rh2BG489400 Rh2CG463200 Rh2DG498400
rosa_wichuraiana	Rw2G038930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	335
AccBSI	CCGCTC	1 cut(s)	103
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	2 cut(s)	231, 244
AcoI	YGGCCR	1 cut(s)	380
AcsI	RAATTY	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	163
AfiI	CCNNNNNNNGG	1 cut(s)	407
AhlI	ACTAGT	2 cut(s)	206, 368
AlwI	GGATC	2 cut(s)	231, 244
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	2 cut(s)	126, 380
ApoI	RAATTY	1 cut(s)	386
AsuC2I	CCSGG	1 cut(s)	340
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	236
BanI	GGYRCC	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	303
BccI	CCATC	1 cut(s)	14
BcnI	CCSGG	1 cut(s)	340
BcuI	ACTAGT	2 cut(s)	206, 368
BfaI	CTAG	3 cut(s)	96, 207, 369
BfmI	CTRYAG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	2 cut(s)	238, 337
BmrFI	CCNGG	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	299
BpuMI	CCSGG	1 cut(s)	340
BsaAI	YACGTR	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
Bse1I	ACTGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	189
BsgI	GTGCAG	2 cut(s)	159, 252
BshFI	GGCC	2 cut(s)	128, 382
BshNI	GGYRCC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	2 cut(s)	128, 382
BsoBI	CYCGRG	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	31, 221, 236
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	128, 382
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	2 cut(s)	238, 337
BspPI	GGATC	2 cut(s)	231, 244
BspT107I	GGYRCC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	189
BssMI	GATC	3 cut(s)	31, 221, 236
BssNI	GRCGYC	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	335
BstACI	GRCGYC	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	42, 135
BstKTI	GATC	3 cut(s)	34, 224, 239
BstMBI	GATC	3 cut(s)	31, 221, 236
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 349
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	225
BstSNI	TACGTA	1 cut(s)	245
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	2 cut(s)	221, 236
BstYI	RGATCY	2 cut(s)	221, 236
BsuRI	GGCC	2 cut(s)	128, 382
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	287
CseI	GACGC	1 cut(s)	171
CviAII	CATG	2 cut(s)	130, 291
CviJI	RGCY	3 cut(s)	128, 289, 382
CviKI_1	RGCY	3 cut(s)	128, 289, 382
DdeI	CTNAG	2 cut(s)	42, 135
DpnI	GATC	3 cut(s)	33, 223, 238
DpnII	GATC	3 cut(s)	31, 221, 236
EaeI	YGGCCR	1 cut(s)	380
Eco105I	TACGTA	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	258
FaeI	CATG	2 cut(s)	133, 294
FaiI	YATR	7 cut(s)	78, 131, 227, 242, 292, 302, 345
FaqI	GGGAC	1 cut(s)	324
FatI	CATG	2 cut(s)	129, 290
FspBI	CTAG	3 cut(s)	96, 207, 369
HaeIII	GGCC	2 cut(s)	128, 382
HapII	CCGG	1 cut(s)	339
HgaI	GACGC	1 cut(s)	171
Hin1I	GRCGYC	1 cut(s)	163
Hin1II	CATG	2 cut(s)	133, 294
HinfI	GANTC	1 cut(s)	312
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	159, 316
HpyCH4III	ACNGT	1 cut(s)	335
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	84, 176, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 349
HpyF3I	CTNAG	2 cut(s)	42, 135
HpySE526I	ACGT	1 cut(s)	244
Hsp92I	GRCGYC	1 cut(s)	163
Hsp92II	CATG	2 cut(s)	133, 294
Kzo9I	GATC	3 cut(s)	31, 221, 236
LpnPI	CCDG	7 cut(s)	77, 129, 144, 202, 219, 291, 352
MaeI	CTAG	3 cut(s)	96, 207, 369
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	5 cut(s)	105, 191, 213, 356, 364
MalI	GATC	3 cut(s)	33, 223, 238
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	3 cut(s)	31, 221, 236
MboII	GAAGA	2 cut(s)	48, 308
MflI	RGATCY	2 cut(s)	221, 236
MluCI	AATT	3 cut(s)	146, 167, 386
MlyI	GAGTC	1 cut(s)	306
MnlI	CCTC	3 cut(s)	19, 118, 409
MseI	TTAA	1 cut(s)	421
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	100, 349
NciI	CCSGG	1 cut(s)	340
NdeII	GATC	3 cut(s)	31, 221, 236
NlaIII	CATG	2 cut(s)	133, 294
NlaIV	GGNNCC	2 cut(s)	238, 337
NmuCI	GTSAC	2 cut(s)	213, 356
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Ppu21I	YACGTR	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	238, 337
PsuI	RGATCY	2 cut(s)	221, 236
SaqAI	TTAA	1 cut(s)	421
Sau3AI	GATC	3 cut(s)	31, 221, 236
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	3 cut(s)	232, 247, 420
SfcI	CTRYAG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SnaBI	TACGTA	1 cut(s)	245
SpeI	ACTAGT	2 cut(s)	206, 368
Sse9I	AATT	3 cut(s)	146, 167, 386
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	3 cut(s)	96, 207, 369
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	335
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	34
TasI	AATT	3 cut(s)	146, 167, 386
Tru1I	TTAA	1 cut(s)	421
Tru9I	TTAA	1 cut(s)	421
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	213, 356
Tsp45I	GTSAC	2 cut(s)	213, 356
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	91
XapI	RAATTY	1 cut(s)	386
XspI	CTAG	3 cut(s)	96, 207, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.