Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010769.1

Orthogroup ID

OG0004676

Physical Location & Seq

Genomic Coordinates Forward (+)

14601 .. 16143

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010769.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggatcaacttttctcggcgaagcctaaacccttccgtatccacagaaaatcacctatcgcttccaagatcaaatcctccatctccgtcaagctctctgaatttctcggtggttacactgacgacgtcttcctggagtatattacagtgctggtttgtaatggaaaggatcaatatcaggcaagagatgacttagaggcatttcttggtgagaggagtgaagaatttgtatcatggttatgggaccttctcttcaaacttgctggaaagttttgtaaggatactgactatctcgatgaagttcctggcattagtcccccaaacagtgatagcagcattggtgcaaaagttgacaggtgcacagacttccggagccatgttaacgaacttttggtaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

133

Amino Acids

15.1

Weight (kDa)

5.16

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24350 AT2G24350
fragaria_vesca	FvH4_5g28080 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250
malus_domestica	MD17G1145400.v1.1
prunus_persica	Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1
pyrus_communis	pycom17g13830
rosa_chinensis	RchiOBHm_Chr2g0150031
rosa_laevigata	RLG00000020461
rosa_multiflora	Rmu_sc0001169.1_g000009 Rmu_sc0001169.1_g000010 Rmu_sc0009445.1_g000019 Rmu_sc0010769.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097500
rosa_rugosa	Rorug02G0417700 Rorug02G0417700 Rorug02G0417700 Rorug02G0417800
rosa_samantha	Rh2AG477400 Rh2BG489400 Rh2CG463200 Rh2DG498400
rosa_wichuraiana	Rw2G038930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AccIII	TCCGGA	1 cut(s)	369
AclWI	GGATC	2 cut(s)	12, 177
AcsI	RAATTY	2 cut(s)	101, 224
AcyI	GRCGYC	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	132, 304
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	362
Alw44I	GTGCAC	1 cut(s)	358
AlwI	GGATC	2 cut(s)	12, 177
Aor13HI	TCCGGA	1 cut(s)	369
ApaLI	GTGCAC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	333
ApoI	RAATTY	2 cut(s)	101, 224
AspS9I	GGNCC	1 cut(s)	244
AsuHPI	GGTGA	2 cut(s)	45, 221
AvaII	GGWCC	1 cut(s)	244
BaeGI	GKGCMC	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	362
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	134, 306
BciVI	GTATCC	2 cut(s)	50, 274
BfuI	GTATCC	2 cut(s)	50, 274
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	2 cut(s)	134, 306
Bme18I	GGWCC	1 cut(s)	244
BmgT120I	GGNCC	1 cut(s)	244
BmiI	GGNNCC	2 cut(s)	245, 374
BmrFI	CCNGG	2 cut(s)	134, 306
BpiI	GAAGAC	1 cut(s)	121
BpmI	CTGGAG	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	134, 306
BseJI	GATNNNNATC	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	229
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	362
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	2 cut(s)	257, 300
BsmFI	GGGAC	2 cut(s)	257, 300
Bsp1286I	GDGCHC	1 cut(s)	362
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	4, 69, 169
BspEI	TCCGGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	245, 374
BspPI	GGATC	2 cut(s)	12, 177
BssMI	GATC	3 cut(s)	4, 69, 169
BssNI	GRCGYC	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	134, 306
Bst4CI	ACNGT	2 cut(s)	148, 326
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	126
BstDEI	CTNAG	1 cut(s)	193
BstKTI	GATC	3 cut(s)	7, 72, 172
BstMBI	GATC	3 cut(s)	4, 69, 169
BstNI	CCWGG	2 cut(s)	134, 306
BstSCI	CCNGG	2 cut(s)	132, 304
BstSLI	GKGCMC	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	121
BsuI	GTATCC	2 cut(s)	50, 274
BtsIMutI	CAGTG	3 cut(s)	117, 153, 331
Cfr13I	GGNCC	1 cut(s)	244
CviAII	CATG	2 cut(s)	234, 377
CviJI	RGCY	3 cut(s)	25, 94, 375
CviKI_1	RGCY	3 cut(s)	25, 94, 375
DdeI	CTNAG	1 cut(s)	193
DpnI	GATC	3 cut(s)	6, 71, 171
DpnII	GATC	3 cut(s)	4, 69, 169
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	244
EcoO109I	RGGNCCY	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	132, 304
FaeI	CATG	2 cut(s)	237, 380
FaiI	YATR	4 cut(s)	141, 235, 241, 378
FaqI	GGGAC	2 cut(s)	257, 300
FatI	CATG	2 cut(s)	233, 376
Fnu4HI	GCNGC	1 cut(s)	334
Fsp4HI	GCNGC	1 cut(s)	334
GluI	GCNGC	1 cut(s)	334
GsuI	CTGGAG	1 cut(s)	155
HapII	CCGG	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	237, 380
HincII	GTYRAC	2 cut(s)	352, 382
HindII	GTYRAC	2 cut(s)	352, 382
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	45, 221
Hpy166II	GTNNAC	3 cut(s)	352, 360, 382
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	2 cut(s)	293, 370
Hpy8I	GTNNAC	3 cut(s)	352, 360, 382
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	43, 257
HpyCH4III	ACNGT	2 cut(s)	148, 326
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	2 cut(s)	344, 360
HpyF3I	CTNAG	1 cut(s)	193
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	2 cut(s)	237, 380
Kpn2I	TCCGGA	1 cut(s)	369
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	4, 69, 169
LmnI	GCTCC	1 cut(s)	372
LpnPI	CCDG	9 cut(s)	119, 137, 146, 164, 249, 291, 318, 340, 383
Lsp1109I	GCAGC	1 cut(s)	345
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	6, 71, 171
MboI	GATC	3 cut(s)	4, 69, 169
MboII	GAAGA	3 cut(s)	121, 233, 244
MhlI	GDGCHC	1 cut(s)	362
MluCI	AATT	3 cut(s)	101, 224, 396
MnlI	CCTC	3 cut(s)	88, 190, 207
MroI	TCCGGA	1 cut(s)	369
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	238
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	134, 306
MvaI	CCWGG	2 cut(s)	134, 306
NdeII	GATC	3 cut(s)	4, 69, 169
NlaIII	CATG	2 cut(s)	237, 380
NlaIV	GGNNCC	2 cut(s)	245, 374
PflFI	GACNNNGTC	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	132, 304
PspGI	CCWGG	2 cut(s)	132, 304
PspN4I	GGNNCC	2 cut(s)	245, 374
PspPI	GGNCC	1 cut(s)	244
PspPPI	RGGWCCY	1 cut(s)	244
PsyI	GACNNNGTC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	4, 69, 169
Sau96I	GGNCC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	134, 306
SduI	GDGCHC	1 cut(s)	362
SetI	ASST	5 cut(s)	58, 96, 129, 249, 359
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	238
Sse9I	AATT	3 cut(s)	101, 224, 396
StyD4I	CCNGG	2 cut(s)	132, 304
TaaI	ACNGT	2 cut(s)	148, 326
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	101, 224, 396
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	3 cut(s)	124, 153, 331
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	26, 76
TspRI	CASTG	3 cut(s)	124, 153, 331
Tth111I	GACNNNGTC	1 cut(s)	125
VneI	GTGCAC	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	2 cut(s)	101, 224
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.