RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24350 AT2G24350 |
| fragaria_vesca | FvH4_5g28080 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 |
| malus_domestica | MD17G1145400.v1.1 |
| prunus_persica | Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1 |
| pyrus_communis | pycom17g13830 |
| rosa_chinensis | RchiOBHm_Chr2g0150031 |
| rosa_laevigata | RLG00000020461 |
| rosa_multiflora | Rmu_sc0001169.1_g000009 Rmu_sc0001169.1_g000010 Rmu_sc0009445.1_g000019 Rmu_sc0010769.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00097500 |
| rosa_rugosa | Rorug02G0417700 Rorug02G0417700 Rorug02G0417700 Rorug02G0417800 |
| rosa_samantha | Rh2AG477400 Rh2BG489400 Rh2CG463200 Rh2DG498400 |
| rosa_wichuraiana | Rw2G038930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 230 |
| AcsI | RAATTY | 1 cut(s) | 99 |
| AfaI | GTAC | 2 cut(s) | 278, 293 |
| AgsI | TTSAA | 3 cut(s) | 51, 255, 401 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 85, 117 |
| AluBI | AGCT | 1 cut(s) | 303 |
| AluI | AGCT | 1 cut(s) | 303 |
| ApoI | RAATTY | 1 cut(s) | 99 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 317 |
| AsuHPI | GGTGA | 1 cut(s) | 149 |
| BaeGI | GKGCMC | 1 cut(s) | 246 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 275, 308 |
| BccI | CCATC | 1 cut(s) | 128 |
| BceAI | ACGGC | 1 cut(s) | 302 |
| BfaI | CTAG | 1 cut(s) | 339 |
| BmrI | ACTGGG | 1 cut(s) | 231 |
| BmuI | ACTGGG | 1 cut(s) | 231 |
| BpmI | CTGGAG | 1 cut(s) | 144 |
| BsaJI | CCNNGG | 1 cut(s) | 350 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 398 |
| Bse1I | ACTGG | 2 cut(s) | 127, 237 |
| Bse3DI | GCAATG | 1 cut(s) | 210 |
| BseDI | CCNNGG | 1 cut(s) | 350 |
| BseMI | GCAATG | 1 cut(s) | 210 |
| BseMII | CTCAG | 2 cut(s) | 45, 170 |
| BseNI | ACTGG | 2 cut(s) | 127, 237 |
| BseRI | GAGGAG | 1 cut(s) | 71 |
| BseSI | GKGCMC | 1 cut(s) | 246 |
| BsgI | GTGCAG | 1 cut(s) | 267 |
| BslFI | GGGAC | 1 cut(s) | 218 |
| BsmFI | GGGAC | 1 cut(s) | 218 |
| Bsp1286I | GDGCHC | 1 cut(s) | 246 |
| Bsp143I | GATC | 1 cut(s) | 145 |
| Bsp19I | CCATGG | 1 cut(s) | 350 |
| BspCNI | CTCAG | 2 cut(s) | 46, 169 |
| BsrDI | GCAATG | 1 cut(s) | 210 |
| BsrI | ACTGG | 2 cut(s) | 127, 237 |
| BssECI | CCNNGG | 1 cut(s) | 350 |
| BssMI | GATC | 1 cut(s) | 145 |
| BssT1I | CCWWGG | 1 cut(s) | 350 |
| BstC8I | GCNNGC | 1 cut(s) | 9 |
| BstDEI | CTNAG | 3 cut(s) | 54, 156, 214 |
| BstDSI | CCRYGG | 1 cut(s) | 350 |
| BstKTI | GATC | 1 cut(s) | 148 |
| BstMBI | GATC | 1 cut(s) | 145 |
| BstSLI | GKGCMC | 1 cut(s) | 246 |
| BtgI | CCRYGG | 1 cut(s) | 350 |
| BtsIMutI | CAGTG | 1 cut(s) | 244 |
| Cac8I | GCNNGC | 1 cut(s) | 9 |
| CseI | GACGC | 1 cut(s) | 13 |
| Csp6I | GTAC | 2 cut(s) | 277, 292 |
| CviAII | CATG | 2 cut(s) | 351, 366 |
| CviJI | RGCY | 3 cut(s) | 289, 303, 336 |
| CviKI_1 | RGCY | 3 cut(s) | 289, 303, 336 |
| CviQI | GTAC | 2 cut(s) | 277, 292 |
| DdeI | CTNAG | 3 cut(s) | 54, 156, 214 |
| DpnI | GATC | 1 cut(s) | 147 |
| DpnII | GATC | 1 cut(s) | 145 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 230 |
| Eco130I | CCWWGG | 1 cut(s) | 350 |
| EcoT14I | CCWWGG | 1 cut(s) | 350 |
| ErhI | CCWWGG | 1 cut(s) | 350 |
| FaeI | CATG | 2 cut(s) | 354, 369 |
| FaiI | YATR | 8 cut(s) | 27, 36, 84, 114, 229, 231, 352, 367 |
| FaqI | GGGAC | 1 cut(s) | 218 |
| FatI | CATG | 2 cut(s) | 350, 365 |
| FspBI | CTAG | 1 cut(s) | 339 |
| GsuI | CTGGAG | 1 cut(s) | 144 |
| HgaI | GACGC | 1 cut(s) | 13 |
| Hin1II | CATG | 2 cut(s) | 354, 369 |
| HinfI | GANTC | 1 cut(s) | 342 |
| HphI | GGTGA | 1 cut(s) | 149 |
| Hpy188I | TCNGA | 1 cut(s) | 271 |
| Hpy188III | TCNNGA | 1 cut(s) | 339 |
| HpyAV | CCTTC | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 3 cut(s) | 203, 284, 326 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 156, 214 |
| Hsp92II | CATG | 2 cut(s) | 354, 369 |
| Kzo9I | GATC | 1 cut(s) | 145 |
| LpnPI | CCDG | 6 cut(s) | 79, 108, 191, 250, 294, 389 |
| MaeI | CTAG | 1 cut(s) | 339 |
| MaeIII | GTNAC | 1 cut(s) | 78 |
| MalI | GATC | 1 cut(s) | 147 |
| MboI | GATC | 1 cut(s) | 145 |
| MboII | GAAGA | 3 cut(s) | 120, 162, 310 |
| MhlI | GDGCHC | 1 cut(s) | 246 |
| MluCI | AATT | 3 cut(s) | 99, 171, 250 |
| MlyI | GAGTC | 1 cut(s) | 351 |
| MmeI | TCCRAC | 1 cut(s) | 399 |
| MnlI | CCTC | 5 cut(s) | 49, 133, 256, 356, 400 |
| MroXI | GAANNNNTTC | 1 cut(s) | 317 |
| MseI | TTAA | 1 cut(s) | 329 |
| MslI | CAYNNNNRTG | 1 cut(s) | 85 |
| NcoI | CCATGG | 1 cut(s) | 350 |
| NdeII | GATC | 1 cut(s) | 145 |
| NlaIII | CATG | 2 cut(s) | 354, 369 |
| NmuCI | GTSAC | 1 cut(s) | 78 |
| PdmI | GAANNNNTTC | 1 cut(s) | 317 |
| PleI | GAGTC | 1 cut(s) | 350 |
| PpsI | GAGTC | 1 cut(s) | 350 |
| RsaI | GTAC | 2 cut(s) | 278, 293 |
| RsaNI | GTAC | 2 cut(s) | 277, 292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 85 |
| SaqAI | TTAA | 1 cut(s) | 329 |
| Sau3AI | GATC | 1 cut(s) | 145 |
| SchI | GAGTC | 1 cut(s) | 351 |
| SduI | GDGCHC | 1 cut(s) | 246 |
| SetI | ASST | 3 cut(s) | 19, 305, 411 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 85 |
| Sse9I | AATT | 3 cut(s) | 99, 171, 250 |
| SspMI | CTAG | 1 cut(s) | 339 |
| StyI | CCWWGG | 1 cut(s) | 350 |
| TaqI | TCGA | 1 cut(s) | 148 |
| TasI | AATT | 3 cut(s) | 99, 171, 250 |
| Tru1I | TTAA | 1 cut(s) | 329 |
| Tru9I | TTAA | 1 cut(s) | 329 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TseFI | GTSAC | 1 cut(s) | 78 |
| Tsp45I | GTSAC | 1 cut(s) | 78 |
| TspDTI | ATGAA | 1 cut(s) | 354 |
| TspRI | CASTG | 1 cut(s) | 244 |
| XapI | RAATTY | 1 cut(s) | 99 |
| XbaI | TCTAGA | 1 cut(s) | 338 |
| XmnI | GAANNNNTTC | 1 cut(s) | 317 |
| XspI | CTAG | 1 cut(s) | 339 |