Rmu_sc0009445.1_g000019

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009445.1
OG0004676
Physical Location & Seq
Forward (+)
86341 .. 88093
1753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009445.1_g000019.1.cds

Sequence Viewer

Length: 536 bp
atggatcaacttttctcggcgaagcctaaacccttccgtatccacagaaaatcacctatcgcttccaagatcaaatcctccatctccgtcaagctctctgaatttctcggtggttacactgacgacgtcttcctggagtatattacagtgctgatttgtaatggaaaggatcaatatcaggcaagagatgacttagaggcatttcttggtgagaggagtgaagaatttgtatcatggttatgggaccttctcttcaaacttgctggaaagttttgtaaggatactgtctatctcgatgaagttcctggcattagtcccccaaacagtgatagcagcattggtgcaaaagttgacaggtgtacagacttccggagccatgttaacgaacttttgcagatgaggggtgataaaatgcgacattctgcttgtgatcctgcttcctgtaacgatatgaggcttgctaaaggttctcaacattacccctctgtctctgtcccttcaactgaggtgaatacagcgttgtcacatggatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWI RRM_1

Protein Analysis

178

Amino Acids

19.93

Weight (kDa)

6.2

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 129
AccIII TCCGGA 1 cut(s) 369
AclWI GGATC 3 cut(s) 12, 177, 425
AcsI RAATTY 2 cut(s) 101, 224
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 2 cut(s) 256, 501
AjnI CCWGG 2 cut(s) 132, 304
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 3 cut(s) 12, 177, 425
Aor13HI TCCGGA 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 2 cut(s) 101, 224
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 4 cut(s) 45, 221, 416, 520
AvaII GGWCC 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 345
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 134, 306
BciVI GTATCC 2 cut(s) 50, 274
BcoDI GTCTC 1 cut(s) 493
BfuI GTATCC 2 cut(s) 50, 274
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 2 cut(s) 134, 306
Bme18I GGWCC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 2 cut(s) 245, 374
BmrFI CCNGG 2 cut(s) 134, 306
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 1 cut(s) 155
BsaBI GATNNNNATC 1 cut(s) 174
BsaHI GRCGYC 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 369
BseBI CCWGG 2 cut(s) 134, 306
BseGI GGATG 1 cut(s) 536
BseJI GATNNNNATC 1 cut(s) 174
BseMII CTCAG 1 cut(s) 495
BseRI GAGGAG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 370
BslFI GGGAC 3 cut(s) 257, 300, 479
BsmAI GTCTC 1 cut(s) 493
BsmFI GGGAC 3 cut(s) 257, 300, 479
Bsp13I TCCGGA 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 359
Bsp143I GATC 4 cut(s) 4, 69, 169, 430
BspCNI CTCAG 1 cut(s) 496
BspEI TCCGGA 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 245, 374
BspPI GGATC 3 cut(s) 12, 177, 425
BsrGI TGTACA 1 cut(s) 359
BssMI GATC 4 cut(s) 4, 69, 169, 430
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 134, 306
Bst4CI ACNGT 3 cut(s) 148, 286, 326
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 193, 504
BstF5I GGATG 1 cut(s) 536
BstKTI GATC 4 cut(s) 7, 72, 172, 433
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 4 cut(s) 4, 69, 169, 430
BstNI CCWGG 2 cut(s) 134, 306
BstSCI CCNGG 2 cut(s) 132, 304
BstV1I GCAGC 1 cut(s) 345
BstV2I GAAGAC 1 cut(s) 121
BsuI GTATCC 2 cut(s) 50, 274
BtsCI GGATG 1 cut(s) 536
BtsIMutI CAGTG 3 cut(s) 117, 153, 331
Cac8I GCNNGC 1 cut(s) 459
Cfr13I GGNCC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 360
CviAII CATG 3 cut(s) 234, 377, 527
CviJI RGCY 4 cut(s) 25, 94, 375, 457
CviKI_1 RGCY 4 cut(s) 25, 94, 375, 457
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 193, 504
DpnI GATC 4 cut(s) 6, 71, 171, 432
DpnII GATC 4 cut(s) 4, 69, 169, 430
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 2 cut(s) 132, 304
FaeI CATG 3 cut(s) 237, 380, 530
FaiI YATR 6 cut(s) 141, 235, 241, 378, 452, 528
FaqI GGGAC 3 cut(s) 257, 300, 479
FatI CATG 3 cut(s) 233, 376, 526
Fnu4HI GCNGC 1 cut(s) 334
Fsp4HI GCNGC 1 cut(s) 334
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 155
HapII CCGG 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 3 cut(s) 237, 380, 530
HincII GTYRAC 2 cut(s) 352, 382
HindII GTYRAC 2 cut(s) 352, 382
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 1 cut(s) 370
HphI GGTGA 4 cut(s) 45, 221, 416, 520
Hpy166II GTNNAC 3 cut(s) 352, 360, 382
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 2 cut(s) 293, 370
Hpy8I GTNNAC 3 cut(s) 352, 360, 382
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 3 cut(s) 43, 257, 507
HpyCH4III ACNGT 3 cut(s) 148, 286, 326
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 344, 394
HpyF3I CTNAG 2 cut(s) 193, 504
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 3 cut(s) 237, 380, 530
Kpn2I TCCGGA 1 cut(s) 369
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 4, 69, 169, 430
LmnI GCTCC 1 cut(s) 372
Lsp1109I GCAGC 1 cut(s) 345
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 113, 443, 522
MalI GATC 4 cut(s) 6, 71, 171, 432
MboI GATC 4 cut(s) 4, 69, 169, 430
MboII GAAGA 3 cut(s) 121, 233, 244
MluCI AATT 2 cut(s) 101, 224
MnlI CCTC 7 cut(s) 88, 190, 207, 393, 447, 493, 499
MroI TCCGGA 1 cut(s) 369
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 2 cut(s) 238, 529
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 2 cut(s) 134, 306
MvaI CCWGG 2 cut(s) 134, 306
NdeII GATC 4 cut(s) 4, 69, 169, 430
NlaIII CATG 3 cut(s) 237, 380, 530
NlaIV GGNNCC 2 cut(s) 245, 374
NmuCI GTSAC 1 cut(s) 522
PflFI GACNNNGTC 1 cut(s) 125
PfoI TCCNGGA 1 cut(s) 132
PkrI GCNGC 1 cut(s) 335
PpuMI RGGWCCY 1 cut(s) 244
Psp5II RGGWCCY 1 cut(s) 244
Psp6I CCWGG 2 cut(s) 132, 304
PspGI CCWGG 2 cut(s) 132, 304
PspN4I GGNNCC 2 cut(s) 245, 374
PspPI GGNCC 1 cut(s) 244
PspPPI RGGWCCY 1 cut(s) 244
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 2 cut(s) 238, 529
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 4 cut(s) 4, 69, 169, 430
Sau96I GGNCC 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 134, 306
SetI ASST 7 cut(s) 58, 96, 129, 249, 359, 469, 510
SinI GGWCC 1 cut(s) 244
SmiMI CAYNNNNRTG 2 cut(s) 238, 529
Sse9I AATT 2 cut(s) 101, 224
StyD4I CCNGG 2 cut(s) 132, 304
TaaI ACNGT 3 cut(s) 148, 286, 326
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 294
TasI AATT 2 cut(s) 101, 224
TatI WGTACW 1 cut(s) 359
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 3 cut(s) 124, 153, 331
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 1 cut(s) 333
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 2 cut(s) 26, 76
TspRI CASTG 3 cut(s) 124, 153, 331
Tth111I GACNNNGTC 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 244
XapI RAATTY 2 cut(s) 101, 224
ZraI GACGTC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.