Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001169.1

Orthogroup ID

OG0004676

Physical Location & Seq

Genomic Coordinates Forward (+)

68044 .. 72163

Gene Structure 4120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001169.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

atggatcaacttttctcggcgaagcctaaacccttccgtatccacagaaaatcacctatcgcttccaagatcaaatcctccatctccgtcaagctctctgaatttctcggtggttacactgacgacgtcttcctgaagaggaattctgaagttcctgcttttgataagaagaggttgtacagtaatcctgttgagatggagaaactggatcatgttgataatgcagtgagtgaacctcattttgcaaataatattggccggaagaggctctttggtgaaatcagtcctgaatgcgaagatacctcacagcattttaagaaatcagatgtggccacaaatgatttgaagaccatacaggaattgcttcatttgaaagaaaaattgaatcaagttgaaatcgaaatgtcaaagcttcggtcaaagcaggtggagtttgaaaaaaatgatgggaaaacgaatcacttgctgaattctggggcaccgaaagattcagaggaaacttttgagtcaagaactgtgttggtgacaaatgtacattttgcagcaactagagaagctttgtccctgtactttgccaagtgtggaatgattgttaacgtaatgatcttgacagacacagtgacttcaaagccaaaagggtctgcttatgttactttcgctagcaaggagtctgttgacaaagcagtggcattgagtggagcgacattcttttgtaggaccttgaaggttctaaggatggcaggagcagctgtggaggcatcagcaccaacccagcttcccgagatgtcttccctcaatattccacatggcaatagaattgctttccccagcaaaccacattatatgaggtctactctgcagtggagaagagagcctggcgctgtcccatcagagcttccatgcccagctggtgttggagtttcctcttctgcccacgagcaacatatttctatttccaacaaagaccggaagacatcatcattagagcccccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWI RRM_1

Protein Analysis

331

Amino Acids

36.74

Weight (kDa)

9.09

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004676)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24350 AT2G24350
fragaria_vesca	FvH4_5g28080 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250 FvH4_6g37250
malus_domestica	MD17G1145400.v1.1
prunus_persica	Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1 Prupe.3G017800_v2.0.a1
pyrus_communis	pycom17g13830
rosa_chinensis	RchiOBHm_Chr2g0150031
rosa_laevigata	RLG00000020461
rosa_multiflora	Rmu_sc0001169.1_g000009 Rmu_sc0001169.1_g000010 Rmu_sc0009445.1_g000019 Rmu_sc0010769.1_g000004
rosa_roxburghii	Rroxscaffold_2G00097500
rosa_rugosa	Rorug02G0417700 Rorug02G0417700 Rorug02G0417700 Rorug02G0417800
rosa_samantha	Rh2AG477400 Rh2BG489400 Rh2CG463200 Rh2DG498400
rosa_wichuraiana	Rw2G038930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	415
AatII	GACGTC	1 cut(s)	129
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	851
AclWI	GGATC	2 cut(s)	12, 216
AcoI	YGGCCR	2 cut(s)	256, 330
AcsI	RAATTY	3 cut(s)	101, 142, 469
AcuI	CTGAAG	2 cut(s)	155, 168
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	3 cut(s)	179, 534, 569
AgsI	TTSAA	7 cut(s)	346, 373, 385, 395, 437, 627, 724
AjnI	CCWGG	1 cut(s)	874
AluBI	AGCT	7 cut(s)	94, 412, 557, 749, 775, 895, 908
AluI	AGCT	7 cut(s)	94, 412, 557, 749, 775, 895, 908
AlwI	GGATC	2 cut(s)	12, 216
Ama87I	CYCGRG	1 cut(s)	779
AoxI	GGCC	2 cut(s)	256, 330
ApeKI	GCWGC	2 cut(s)	542, 746
ApoI	RAATTY	3 cut(s)	101, 142, 469
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	1 cut(s)	717
AsuHPI	GGTGA	3 cut(s)	45, 287, 535
AsuNHI	GCTAGC	1 cut(s)	659
AvaI	CYCGRG	1 cut(s)	779
AvaII	GGWCC	1 cut(s)	717
BaeGI	GKGCMC	1 cut(s)	481
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	990
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
BauI	CACGAG	1 cut(s)	935
BbsI	GAAGAC	4 cut(s)	121, 353, 780, 977
BbvI	GCAGC	2 cut(s)	554, 758
BccI	CCATC	5 cut(s)	89, 190, 440, 730, 895
BcgI	CGANNNNNNTGC	2 cut(s)	445, 479
BciT130I	CCWGG	1 cut(s)	876
BciVI	GTATCC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	549, 660
BfmI	CTRYAG	1 cut(s)	857
BfoI	RGCGCY	1 cut(s)	882
BfuAI	ACCTGC	1 cut(s)	415
BfuI	GTATCC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	543, 747
BlsI	GCNGC	2 cut(s)	544, 748
Bme1390I	CCNGG	1 cut(s)	876
Bme18I	GGWCC	1 cut(s)	717
BmeT110I	CYCGRG	1 cut(s)	779
BmgT120I	GGNCC	1 cut(s)	717
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	876
BmsI	GCATC	1 cut(s)	767
BmtI	GCTAGC	1 cut(s)	663
BpiI	GAAGAC	4 cut(s)	121, 353, 780, 977
BplI	GAGNNNNNCTC	4 cut(s)	220, 252, 838, 870
BsaHI	GRCGYC	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	966
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bse1I	ACTGG	1 cut(s)	210
BseBI	CCWGG	1 cut(s)	876
BseGI	GGATG	1 cut(s)	741
BseNI	ACTGG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	481
BseXI	GCAGC	2 cut(s)	554, 758
BseYI	CCCAGC	3 cut(s)	771, 827, 904
BshFI	GGCC	2 cut(s)	258, 332
BshNI	GGYRCC	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	779
BsiSI	CCGG	2 cut(s)	259, 967
BslFI	GGGAC	2 cut(s)	547, 869
BsmFI	GGGAC	2 cut(s)	547, 869
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	258, 332
BsoBI	CYCGRG	1 cut(s)	779
Bsp1286I	GDGCHC	2 cut(s)	481, 990
Bsp1407I	TGTACA	2 cut(s)	177, 532
Bsp143I	GATC	4 cut(s)	4, 69, 208, 603
BspANI	GGCC	2 cut(s)	258, 332
BspLI	GGNNCC	1 cut(s)	480
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	663
BspPI	GGATC	2 cut(s)	12, 216
BspT107I	GGYRCC	1 cut(s)	478
BsrGI	TGTACA	2 cut(s)	177, 532
BsrI	ACTGG	1 cut(s)	210
BssMI	GATC	4 cut(s)	4, 69, 208, 603
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	935
Bst2BI	CACGAG	1 cut(s)	935
Bst2UI	CCWGG	1 cut(s)	876
Bst4CI	ACNGT	3 cut(s)	182, 517, 619
Bst6I	CTCTTC	5 cut(s)	131, 164, 257, 862, 931
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	2 cut(s)	177, 532
BstC8I	GCNNGC	1 cut(s)	661
BstDEI	CTNAG	1 cut(s)	731
BstF5I	GGATG	1 cut(s)	741
BstH2I	RGCGCY	1 cut(s)	882
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	4 cut(s)	7, 72, 211, 606
BstMBI	GATC	4 cut(s)	4, 69, 208, 603
BstMWI	GCNNNNNNNGC	2 cut(s)	746, 755
BstNI	CCWGG	1 cut(s)	876
BstSCI	CCNGG	1 cut(s)	874
BstSFI	CTRYAG	1 cut(s)	857
BstSLI	GKGCMC	1 cut(s)	481
BstV1I	GCAGC	2 cut(s)	554, 758
BstV2I	GAAGAC	4 cut(s)	121, 353, 780, 977
BsuI	GTATCC	1 cut(s)	50
BsuRI	GGCC	2 cut(s)	258, 332
BtsCI	GGATG	1 cut(s)	741
BtsI	GCAGTG	3 cut(s)	231, 690, 866
BtsIMutI	CAGTG	5 cut(s)	117, 231, 624, 690, 866
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	661
CfoI	GCGC	1 cut(s)	881
Cfr13I	GGNCC	1 cut(s)	717
Csp6I	GTAC	3 cut(s)	178, 533, 568
CspCI	CAANNNNNGTGG	2 cut(s)	408, 443
CviAII	CATG	4 cut(s)	212, 806, 900, 993
CviQI	GTAC	3 cut(s)	178, 533, 568
DdeI	CTNAG	1 cut(s)	731
DpnI	GATC	4 cut(s)	6, 71, 210, 605
DpnII	GATC	4 cut(s)	4, 69, 208, 603
EaeI	YGGCCR	2 cut(s)	256, 330
Eam1104I	CTCTTC	5 cut(s)	131, 164, 257, 862, 931
EarI	CTCTTC	5 cut(s)	131, 164, 257, 862, 931
Eco24I	GRGCYC	1 cut(s)	990
Eco47I	GGWCC	1 cut(s)	717
Eco57I	CTGAAG	2 cut(s)	155, 168
Eco88I	CYCGRG	1 cut(s)	779
EcoO109I	RGGNCCY	1 cut(s)	717
EcoRI	GAATTC	2 cut(s)	142, 469
EcoRII	CCWGG	1 cut(s)	874
EcoT38I	GRGCYC	1 cut(s)	990
FaeI	CATG	4 cut(s)	215, 809, 903, 996
FaiI	YATR	9 cut(s)	213, 353, 648, 807, 843, 845, 901, 945, 994
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	547, 869
FatI	CATG	4 cut(s)	211, 805, 899, 992
FblI	GTMKAC	1 cut(s)	851
Fnu4HI	GCNGC	2 cut(s)	543, 747
FokI	GGATG	1 cut(s)	748
FriOI	GRGCYC	1 cut(s)	990
Fsp4HI	GCNGC	2 cut(s)	543, 747
FspBI	CTAG	2 cut(s)	549, 660
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	2 cut(s)	543, 747
GsaI	CCCAGC	3 cut(s)	775, 831, 908
HaeII	RGCGCY	1 cut(s)	882
HaeIII	GGCC	2 cut(s)	258, 332
HapII	CCGG	2 cut(s)	259, 967
HhaI	GCGC	1 cut(s)	881
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	4 cut(s)	215, 809, 903, 996
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HincII	GTYRAC	2 cut(s)	595, 676
HindII	GTYRAC	2 cut(s)	595, 676
HindIII	AAGCTT	2 cut(s)	410, 555
HinfI	GANTC	5 cut(s)	385, 457, 488, 506, 668
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	2 cut(s)	259, 967
HphI	GGTGA	3 cut(s)	45, 287, 535
Hpy166II	GTNNAC	4 cut(s)	233, 595, 676, 852
Hpy188I	TCNGA	5 cut(s)	100, 148, 325, 493, 892
Hpy188III	TCNNGA	5 cut(s)	133, 287, 510, 607, 779
Hpy8I	GTNNAC	4 cut(s)	233, 595, 676, 852
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	43, 718
HpyCH4III	ACNGT	3 cut(s)	182, 517, 619
HpyCH4IV	ACGT	2 cut(s)	126, 597
HpyCH4V	TGCA	4 cut(s)	224, 245, 542, 859
HpyF10VI	GCNNNNNNNGC	2 cut(s)	746, 755
HpyF3I	CTNAG	1 cut(s)	731
HpySE526I	ACGT	2 cut(s)	126, 597
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	4 cut(s)	215, 809, 903, 996
HspAI	GCGC	1 cut(s)	879
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	4, 69, 208, 603
LmnI	GCTCC	2 cut(s)	698, 743
Lsp1109I	GCAGC	2 cut(s)	554, 758
LweI	GCATC	1 cut(s)	767
MaeI	CTAG	2 cut(s)	549, 660
MaeII	ACGT	2 cut(s)	126, 597
MaeIII	GTNAC	4 cut(s)	113, 523, 619, 649
MalI	GATC	4 cut(s)	6, 71, 210, 605
MboI	GATC	4 cut(s)	4, 69, 208, 603
MhlI	GDGCHC	2 cut(s)	481, 990
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	6 cut(s)	101, 142, 359, 380, 469, 816
MluNI	TGGCCA	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	515, 677
MmeI	TCCRAC	2 cut(s)	895, 981
Mox20I	TGGCCA	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	363
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	2 cut(s)	315, 594
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	2 cut(s)	749, 908
MspI	CCGG	2 cut(s)	259, 967
MspR9I	CCNGG	1 cut(s)	876
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	876
MwoI	GCNNNNNNNGC	2 cut(s)	746, 755
NdeII	GATC	4 cut(s)	4, 69, 208, 603
NheI	GCTAGC	1 cut(s)	659
NlaIII	CATG	4 cut(s)	215, 809, 903, 996
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	523, 619
PaqCI	CACCTGC	1 cut(s)	415
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	385, 457, 488
PflFI	GACNNNGTC	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	544, 748
PleI	GAGTC	2 cut(s)	514, 676
PpsI	GAGTC	2 cut(s)	514, 676
PpuMI	RGGWCCY	1 cut(s)	717
Psp5II	RGGWCCY	1 cut(s)	717
Psp6I	CCWGG	1 cut(s)	874
PspFI	CCCAGC	3 cut(s)	771, 827, 904
PspGI	CCWGG	1 cut(s)	874
PspN4I	GGNNCC	1 cut(s)	480
PspPI	GGNCC	1 cut(s)	717
PspPPI	RGGWCCY	1 cut(s)	717
PstI	CTGCAG	1 cut(s)	861
PsyI	GACNNNGTC	1 cut(s)	125
PvuII	CAGCTG	2 cut(s)	749, 908
RsaI	GTAC	3 cut(s)	179, 534, 569
RsaNI	GTAC	3 cut(s)	178, 533, 568
SaqAI	TTAA	2 cut(s)	315, 594
SatI	GCNGC	2 cut(s)	543, 747
Sau3AI	GATC	4 cut(s)	4, 69, 208, 603
Sau96I	GGNCC	1 cut(s)	717
SchI	GAGTC	2 cut(s)	515, 677
ScrFI	CCNGG	1 cut(s)	876
SduI	GDGCHC	2 cut(s)	481, 990
SfaNI	GCATC	1 cut(s)	767
SfcI	CTRYAG	1 cut(s)	857
SinI	GGWCC	1 cut(s)	717
Sse9I	AATT	6 cut(s)	101, 142, 359, 380, 469, 816
SspI	AATATT	2 cut(s)	253, 799
SspMI	CTAG	2 cut(s)	549, 660
StyD4I	CCNGG	1 cut(s)	874
TaaI	ACNGT	3 cut(s)	182, 517, 619
TaiI	ACGT	2 cut(s)	129, 600
TaqI	TCGA	1 cut(s)	399
TaqII	GACCGA	1 cut(s)	405
TasI	AATT	6 cut(s)	101, 142, 359, 380, 469, 816
TatI	WGTACW	3 cut(s)	177, 532, 567
TfiI	GAWTC	3 cut(s)	385, 457, 488
Tru1I	TTAA	2 cut(s)	315, 594
Tru9I	TTAA	2 cut(s)	315, 594
TscAI	CASTG	5 cut(s)	124, 231, 624, 690, 866
TseFI	GTSAC	2 cut(s)	523, 619
TseI	GCWGC	2 cut(s)	542, 746
Tsp45I	GTSAC	2 cut(s)	523, 619
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	2 cut(s)	26, 76
TspRI	CASTG	5 cut(s)	124, 231, 624, 690, 866
Tth111I	GACNNNGTC	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	717
XapI	RAATTY	3 cut(s)	101, 142, 469
XmiI	GTMKAC	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	549, 660
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.