AT2G24500

zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013264
Physical Location & Seq
Reverse (-)
10400630 .. 10402934
2305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24500.1

Sequence Viewer

Length: 1188 bp
ATGTCAGGTTTAGCTTGTAATTCGTGTAACAAAGACTTCGAAGACGACGCTGAGCAGAAGTTTCACTACAAATCCGAATGGCACCGTTACAATCTCAAGCGCAAGATAGCTGGTGTTCCTGGAGTAACAGAGGCACTATTTGAAGCTAGACAAGCTGCTATAGCTCAAGAGAAGGTTAAAGCTGTTGAAGCACCGATGCTTTATAGTTGTGGAATCTGTAACAAAGGTTACAGGAGTTCCAAGGCTCATGAGCAGCATCTTAAGTCGAAGAGTCATGTTTTGAAGGCTTCGACGAGTACTGGAGAGGAGGATAAAGCGATCATCAAGCAGCTTCCGCCTCGTCGTGTTGAGAAGAATAACACTGCTCAATTGAAGGGTTCGATTGAGGAGGAAGAGAGTGAAGATGAATGGATTGAGGTTGATTCGGATGAGGATTTGGATGCGGAAATGAATGAGGATGGTGAAGAAGAAGATATGGATGAAGATGGTATTGAATTTGAGTTGGATCCGGCTTGTTGTTTGATGTGTGATAAGAAGCATAAGACTATAGAGAAATGTATGGTTCATATGCATAAGTTTCATGGGTTCTTCATTCCTGATATTGAGTACTTGAAGGATCCTAAAGGGTTTCTGACCTACCTCGGTCTAAAGGTCAAGAGAGACTTCGTGTGTCTGTACTGCAATGAATTGTGCCATCCATTTAGTAGTTTGGAAGCTGTTCGTAAGCATATGGACGCCAAAGGTCATTGCAAAGTGCATTATGGTGATGGTGGTGATGAAGAAGATGCAGAACTTGAAGAGTTCTATGACTACAGCAGCAGCTATGTCAATGGAGACGAAAATCAGATGGTTGTGTCCGGTGAGTCAGTGAACACTGTAGAGCTTTTTGGTGGGTCTGAGCTTGTGATCACCAAGAGAACCGATAACAAAGTAACGTCTAGGACTCTTGGGTCTCGAGAATTCATGCGCTACTACAAACAGAAGCCAGCACCGTCTTCTCAGAAGCATATTGTCAACTCTCTAACCTCCAGGTACAAGATGATGGGTCTAGCAACAGTGCAGTCAAAGGAGGCCATAGTGAGGATGAAGGTGATGAGAGAGATGAACAAAAGAGGAGCGAAAAGCAGTGTCAGGCTCGGAATGAAGAGCAACGTCATCAGGAATCTGCCCAACAATGTCACCTATTAG

Protein Analysis

395

Amino Acids

44.99

Weight (kDa)

5.77

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_2 PF12756 173 - 275 3.3e-27 C2H2 type zinc-finger (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24500 AT4G31420 AT4G31420
fragaria_vesca FvH4_2g36910
malus_domestica MD08G1131000.v1.1 MD15G1108800.v1.1
prunus_persica Prupe.1G461000_v2.0.a1
pyrus_communis pycom15g09940
rosa_chinensis RchiOBHm_Chr6g0304871
rosa_laevigata RLG00000010943
rosa_multiflora Rmu_ssc0000278.1_g000006
rosa_roxburghii Rroxscaffold_7G00163390
rosa_rugosa Rorug06G0336000
rosa_samantha Rh6AG447100 Rh6BG454400 Rh6CG460600 Rh6DG447600
rosa_wichuraiana Rw6G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 949
AccB1I GGYRCC 1 cut(s) 81
AciI CCGC 2 cut(s) 335, 443
AclWI GGATC 4 cut(s) 500, 513, 611, 624
AcsI RAATTY 2 cut(s) 494, 959
AcyI GRCGYC 1 cut(s) 735
AfaI GTAC 4 cut(s) 298, 608, 677, 1034
AfiI CCNNNNNNNGG 1 cut(s) 1080
AflII CTTAAG 1 cut(s) 260
AgsI TTSAA 7 cut(s) 143, 188, 283, 373, 494, 613, 797
AjnI CCWGG 2 cut(s) 118, 1028
Alw26I GTCTC 3 cut(s) 654, 828, 957
AlwI GGATC 4 cut(s) 500, 513, 611, 624
Ama87I CYCGRG 1 cut(s) 954
AoxI GGCC 1 cut(s) 1071
ApeKI GCWGC 5 cut(s) 155, 253, 328, 816, 819
ApoI RAATTY 2 cut(s) 494, 959
Asp700I GAANNNNTTC 1 cut(s) 717
AspLEI GCGC 2 cut(s) 102, 969
AsuHPI GGTGA 7 cut(s) 473, 776, 785, 872, 901, 1102, 1171
AsuII TTCGAA 1 cut(s) 39
AvaI CYCGRG 1 cut(s) 954
BamHI GGATCC 2 cut(s) 505, 616
BanI GGYRCC 1 cut(s) 81
BarI GAAGNNNNNNTAC 2 cut(s) 50, 82
BbsI GAAGAC 2 cut(s) 48, 987
BbvI GCAGC 5 cut(s) 142, 265, 340, 828, 831
BccI CCATC 6 cut(s) 452, 479, 702, 761, 841, 1036
BciT130I CCWGG 2 cut(s) 120, 1030
BclI TGATCA 1 cut(s) 906
BcoDI GTCTC 3 cut(s) 654, 828, 957
BfaI CTAG 3 cut(s) 147, 939, 1049
BfmI CTRYAG 4 cut(s) 159, 546, 811, 876
BfrI CTTAAG 1 cut(s) 260
BisI GCNGC 5 cut(s) 156, 254, 329, 817, 820
BlpI GCTNAGC 1 cut(s) 51
BlsI GCNGC 5 cut(s) 157, 255, 330, 818, 821
BmcAI AGTACT 2 cut(s) 298, 608
Bme1390I CCNGG 2 cut(s) 120, 1030
BmeT110I CYCGRG 1 cut(s) 954
BmiI GGNNCC 3 cut(s) 83, 507, 618
BmrFI CCNGG 2 cut(s) 120, 1030
BmsI GCATC 4 cut(s) 186, 265, 430, 775
BpiI GAAGAC 2 cut(s) 48, 987
BpmI CTGGAG 3 cut(s) 141, 321, 1012
Bpu1102I GCTNAGC 1 cut(s) 51
Bpu14I TTCGAA 1 cut(s) 39
BpuEI CTTGAG 2 cut(s) 80, 150
BsaHI GRCGYC 1 cut(s) 735
BsaI GGTCTC 1 cut(s) 957
BsaJI CCNNGG 2 cut(s) 240, 640
BsaWI WCCGGW 1 cut(s) 857
Bsc4I CCNNNNNNNGG 1 cut(s) 1080
Bse1I ACTGG 1 cut(s) 304
Bse3DI GCAATG 2 cut(s) 688, 745
BseBI CCWGG 2 cut(s) 120, 1030
BseDI CCNNGG 2 cut(s) 240, 640
BseGI GGATG 6 cut(s) 433, 445, 463, 484, 694, 1089
BseLI CCNNNNNNNGG 1 cut(s) 1080
BseMI GCAATG 2 cut(s) 688, 745
BseMII CTCAG 3 cut(s) 42, 888, 1013
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 3 cut(s) 320, 401, 1128
BseXI GCAGC 5 cut(s) 142, 265, 340, 828, 831
BsgI GTGCAG 1 cut(s) 1079
BshFI GGCC 1 cut(s) 1073
BshNI GGYRCC 1 cut(s) 81
BsiHKCI CYCGRG 1 cut(s) 954
BsiSI CCGG 2 cut(s) 509, 858
BslI CCNNNNNNNGG 1 cut(s) 1080
BsmAI GTCTC 3 cut(s) 654, 828, 957
BsmBI CGTCTC 1 cut(s) 828
BsnI GGCC 1 cut(s) 1073
Bso31I GGTCTC 1 cut(s) 957
BsoBI CYCGRG 1 cut(s) 954
Bsp119I TTCGAA 1 cut(s) 39
Bsp143I GATC 4 cut(s) 318, 505, 616, 906
Bsp1720I GCTNAGC 1 cut(s) 51
BspACI CCGC 2 cut(s) 335, 443
BspANI GGCC 1 cut(s) 1073
BspCNI CTCAG 3 cut(s) 43, 889, 1012
BspHI TCATGA 1 cut(s) 247
BspLI GGNNCC 3 cut(s) 83, 507, 618
BspPI GGATC 4 cut(s) 500, 513, 611, 624
BspQI GCTCTTC 1 cut(s) 1139
BspT104I TTCGAA 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 81
BspTI CTTAAG 1 cut(s) 260
BspTNI GGTCTC 1 cut(s) 957
BsrDI GCAATG 2 cut(s) 688, 745
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 2 cut(s) 240, 640
BssMI GATC 4 cut(s) 318, 505, 616, 906
BssNI GRCGYC 1 cut(s) 735
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 2 cut(s) 120, 1030
Bst4CI ACNGT 4 cut(s) 86, 877, 993, 1057
Bst6I CTCTTC 4 cut(s) 263, 387, 792, 1139
BstACI GRCGYC 1 cut(s) 735
BstAFI CTTAAG 1 cut(s) 260
BstBI TTCGAA 1 cut(s) 39
BstC8I GCNNGC 1 cut(s) 987
BstDEI CTNAG 3 cut(s) 51, 897, 999
BstF5I GGATG 6 cut(s) 433, 445, 463, 484, 694, 1089
BstHHI GCGC 2 cut(s) 102, 969
BstKTI GATC 4 cut(s) 321, 508, 619, 909
BstMAI GTCTC 3 cut(s) 654, 828, 957
BstMBI GATC 4 cut(s) 318, 505, 616, 906
BstMWI GCNNNNNNNGC 4 cut(s) 152, 161, 188, 334
BstNI CCWGG 2 cut(s) 120, 1030
BstSCI CCNGG 2 cut(s) 118, 1028
BstSFI CTRYAG 4 cut(s) 159, 546, 811, 876
BstV1I GCAGC 5 cut(s) 142, 265, 340, 828, 831
BstV2I GAAGAC 2 cut(s) 48, 987
BstX2I RGATCY 2 cut(s) 505, 616
BstYI RGATCY 2 cut(s) 505, 616
BsuRI GGCC 1 cut(s) 1073
BtsCI GGATG 6 cut(s) 433, 445, 463, 484, 694, 1089
BtsI GCAGTG 2 cut(s) 360, 1132
BtsIMutI CAGTG 5 cut(s) 360, 873, 873, 1062, 1132
Cac8I GCNNGC 1 cut(s) 987
CciI TCATGA 1 cut(s) 247
CfoI GCGC 2 cut(s) 102, 969
CseI GACGC 2 cut(s) 56, 743
Csp6I GTAC 4 cut(s) 297, 607, 676, 1033
CviAII CATG 4 cut(s) 248, 275, 581, 964
CviQI GTAC 4 cut(s) 297, 607, 676, 1033
DdeI CTNAG 3 cut(s) 51, 897, 999
DpnI GATC 4 cut(s) 320, 507, 618, 908
DpnII GATC 4 cut(s) 318, 505, 616, 906
DrdI GACNNNNNNGTC 1 cut(s) 949
DseDI GACNNNNNNGTC 1 cut(s) 949
Eam1104I CTCTTC 4 cut(s) 263, 387, 792, 1139
EarI CTCTTC 4 cut(s) 263, 387, 792, 1139
EciI GGCGGA 1 cut(s) 324
Eco130I CCWWGG 1 cut(s) 240
Eco31I GGTCTC 1 cut(s) 957
Eco88I CYCGRG 1 cut(s) 954
EcoRI GAATTC 1 cut(s) 959
EcoRII CCWGG 2 cut(s) 118, 1028
EcoT14I CCWWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 573
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 828
FaeI CATG 4 cut(s) 251, 278, 584, 967
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 4 cut(s) 247, 274, 580, 963
FauNDI CATATG 2 cut(s) 567, 729
FbaI TGATCA 1 cut(s) 906
Fnu4HI GCNGC 5 cut(s) 156, 254, 329, 817, 820
FokI GGATG 6 cut(s) 440, 452, 470, 491, 681, 1096
Fsp4HI GCNGC 5 cut(s) 156, 254, 329, 817, 820
FspBI CTAG 3 cut(s) 147, 939, 1049
GlaI GCGC 2 cut(s) 101, 968
GluI GCNGC 5 cut(s) 156, 254, 329, 817, 820
GsuI CTGGAG 3 cut(s) 141, 321, 1012
HaeIII GGCC 1 cut(s) 1073
HapII CCGG 2 cut(s) 509, 858
HgaI GACGC 2 cut(s) 56, 743
HhaI GCGC 2 cut(s) 102, 969
Hin1I GRCGYC 1 cut(s) 735
Hin1II CATG 4 cut(s) 251, 278, 584, 967
Hin6I GCGC 2 cut(s) 100, 967
HinP1I GCGC 2 cut(s) 100, 967
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HinfI GANTC 6 cut(s) 213, 271, 422, 863, 943, 1162
HpaII CCGG 2 cut(s) 509, 858
HphI GGTGA 7 cut(s) 473, 776, 785, 872, 901, 1102, 1171
Hpy166II GTNNAC 2 cut(s) 871, 1015
Hpy188I TCNGA 7 cut(s) 76, 427, 633, 846, 898, 1002, 1139
Hpy188III TCNNGA 7 cut(s) 167, 248, 596, 655, 954, 956, 1159
Hpy8I GTNNAC 2 cut(s) 871, 1015
Hpy99I CGWCG 3 cut(s) 50, 295, 345
HpyAV CCTTC 5 cut(s) 166, 277, 367, 607, 1081
HpyCH4III ACNGT 4 cut(s) 86, 877, 993, 1057
HpyCH4IV ACGT 2 cut(s) 935, 1152
HpyCH4V TGCA 6 cut(s) 571, 681, 750, 757, 788, 1060
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 161, 188, 334
HpyF3I CTNAG 3 cut(s) 51, 897, 999
HpySE526I ACGT 2 cut(s) 935, 1152
Hsp92I GRCGYC 1 cut(s) 735
Hsp92II CATG 4 cut(s) 251, 278, 584, 967
HspAI GCGC 2 cut(s) 100, 967
Ksp22I TGATCA 1 cut(s) 906
Kzo9I GATC 4 cut(s) 318, 505, 616, 906
LguI GCTCTTC 1 cut(s) 1139
LmnI GCTCC 1 cut(s) 1115
Lsp1109I GCAGC 5 cut(s) 142, 265, 340, 828, 831
LweI GCATC 4 cut(s) 186, 265, 430, 775
MaeI CTAG 3 cut(s) 147, 939, 1049
MaeII ACGT 2 cut(s) 935, 1152
MaeIII GTNAC 7 cut(s) 26, 86, 124, 218, 227, 931, 1177
MalI GATC 4 cut(s) 320, 507, 618, 908
MboI GATC 4 cut(s) 318, 505, 616, 906
MfeI CAATTG 1 cut(s) 368
MflI RGATCY 2 cut(s) 505, 616
MluCI AATT 5 cut(s) 19, 368, 494, 686, 959
MlyI GAGTC 3 cut(s) 280, 872, 937
MmeI TCCRAC 1 cut(s) 483
Mph1103I ATGCAT 1 cut(s) 573
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 2 cut(s) 177, 261
MslI CAYNNNNRTG 1 cut(s) 762
MspCI CTTAAG 1 cut(s) 260
MspI CCGG 2 cut(s) 509, 858
MspR9I CCNGG 2 cut(s) 120, 1030
MunI CAATTG 1 cut(s) 368
MvaI CCWGG 2 cut(s) 120, 1030
MwoI GCNNNNNNNGC 4 cut(s) 152, 161, 188, 334
NdeI CATATG 2 cut(s) 567, 729
NdeII GATC 4 cut(s) 318, 505, 616, 906
NlaIII CATG 4 cut(s) 251, 278, 584, 967
NlaIV GGNNCC 3 cut(s) 83, 507, 618
NmuCI GTSAC 1 cut(s) 1177
NsiI ATGCAT 1 cut(s) 573
NspV TTCGAA 1 cut(s) 39
PaeR7I CTCGAG 1 cut(s) 954
PagI TCATGA 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 1139
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 3 cut(s) 213, 422, 1162
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 5 cut(s) 157, 255, 330, 818, 821
PleI GAGTC 3 cut(s) 279, 871, 937
PpsI GAGTC 3 cut(s) 279, 871, 937
Psp6I CCWGG 2 cut(s) 118, 1028
PspGI CCWGG 2 cut(s) 118, 1028
PspN4I GGNNCC 3 cut(s) 83, 507, 618
PsuI RGATCY 2 cut(s) 505, 616
RsaI GTAC 4 cut(s) 298, 608, 677, 1034
RsaNI GTAC 4 cut(s) 297, 607, 676, 1033
RseI CAYNNNNRTG 1 cut(s) 762
SapI GCTCTTC 1 cut(s) 1139
SaqAI TTAA 2 cut(s) 177, 261
SatI GCNGC 5 cut(s) 156, 254, 329, 817, 820
Sau3AI GATC 4 cut(s) 318, 505, 616, 906
ScaI AGTACT 2 cut(s) 298, 608
SchI GAGTC 3 cut(s) 280, 872, 937
ScrFI CCNGG 2 cut(s) 120, 1030
SfaNI GCATC 4 cut(s) 186, 265, 430, 775
SfcI CTRYAG 4 cut(s) 159, 546, 811, 876
Sfr274I CTCGAG 1 cut(s) 954
SfuI TTCGAA 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 954
SmiMI CAYNNNNRTG 1 cut(s) 762
SmlI CTYRAG 4 cut(s) 95, 165, 260, 954
SmoI CTYRAG 4 cut(s) 95, 165, 260, 954
Sse9I AATT 5 cut(s) 19, 368, 494, 686, 959
SsiI CCGC 2 cut(s) 335, 443
SspMI CTAG 3 cut(s) 147, 939, 1049
StyD4I CCNGG 2 cut(s) 118, 1028
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 4 cut(s) 86, 877, 993, 1057
TaiI ACGT 2 cut(s) 938, 1155
TaqI TCGA 5 cut(s) 39, 266, 290, 380, 955
TaqII GACCGA 1 cut(s) 632
TasI AATT 5 cut(s) 19, 368, 494, 686, 959
TatI WGTACW 3 cut(s) 296, 606, 675
TfiI GAWTC 3 cut(s) 213, 422, 1162
Tru1I TTAA 2 cut(s) 177, 261
Tru9I TTAA 2 cut(s) 177, 261
TscAI CASTG 5 cut(s) 367, 873, 880, 1062, 1132
TseFI GTSAC 1 cut(s) 1177
TseI GCWGC 5 cut(s) 155, 253, 328, 816, 819
Tsp45I GTSAC 1 cut(s) 1177
TspRI CASTG 5 cut(s) 367, 873, 880, 1062, 1132
Vha464I CTTAAG 1 cut(s) 260
XapI RAATTY 2 cut(s) 494, 959
XhoI CTCGAG 1 cut(s) 954
XmnI GAANNNNTTC 1 cut(s) 717
XspI CTAG 3 cut(s) 147, 939, 1049
ZrmI AGTACT 2 cut(s) 298, 608
Zsp2I ATGCAT 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.