Rh6AG447100

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0013264
Physical Location & Seq
Reverse (-)
63375564 .. 63378620
3057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG447100.1

Sequence Viewer

Length: 960 bp
ATGTCAGGGCTAGCTTGCAACGCCTGTAACAAAGAGCTCAAGGACGACACCGAGCAGAGGCTCCATTACAAGTCCGAATGGCACCGCTACAACCTCAAGCGCAAGGTAGCTGGGGTTCCTGGAGTGACAGAAGCATTGTTTCTTGCAAGACAAGCTGCACTTGCTCAGGAGAAAAATGGTGCAAATGAAACCCCAATGCTCTACAGCTGTGCTCTTTGTGGCAAAGGGTATAGAAGTTCCAAGGCTCATGCTGAGCATCTCAAATCACGAAGTCACATTATGCGGGCCTCTCAAGGGACTGGTGATGAAGAAGAAGACAAGGCAATAGTCAGGCCACTTCCGAGTCGTGCGAATAAGGCTCCCCCTAGGAGAGAGGAAATTGATGAGGAGAGTCACGAAAGTGAAGAAAGTGGAGATGAGTGGGAGGAGGTTGACCCTGAGGATGAGTTGGTTAGTGAGACTGCAAAATCTTTGACTGGTTTAAATGTAGATGGGCATGCTTCTAATGAGGATATGGATGAAGATGACGACGACGACGACTATGAGGAGTTGGACCCATCATGTTGCTTTATGTGCGATAAAGAGCATAAGACCATAGAGAGATGCATGATTCACATGCACAAACACCATGGATTCTTCATTCCTGATATTGAGTATTTGAAGGACCCAAAAGGTCTTCTTACTTATCTTGGTCTCAAGGTTAAAAGGGATTTTATGTGTCTGTACTGCAATGATAGGTGCCAACCCTTTAACAGTTTGGAAGCAGTTAGGAAGCATATGGTGGCAAAAAGCCACTGCAAGGTACACTATGGAGATGGTGGTGATGAAGAAGAAGCAGAGTTGGATGAGTTCTATGATTACAGCAGCAGGTTTTGTTCTTTCTCATACATTGGCTTGTTCAATACTTATATTGGCTGCTATTTTGTTATGTTACTAGTTTTAAGCATTAGTTTATGTTAG

Protein Analysis

319

Amino Acids

36.41

Weight (kDa)

4.97

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_2 PF12756 189 - 289 7e-27 C2H2 type zinc-finger (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24500 AT4G31420 AT4G31420
fragaria_vesca FvH4_2g36910
malus_domestica MD08G1131000.v1.1 MD15G1108800.v1.1
prunus_persica Prupe.1G461000_v2.0.a1
pyrus_communis pycom15g09940
rosa_chinensis RchiOBHm_Chr6g0304871
rosa_laevigata RLG00000010943
rosa_multiflora Rmu_ssc0000278.1_g000006
rosa_roxburghii Rroxscaffold_7G00163390
rosa_rugosa Rorug06G0336000
rosa_samantha Rh6AG447100 Rh6BG454400 Rh6CG460600 Rh6DG447600
rosa_wichuraiana Rw6G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 858
AccB1I GGYRCC 2 cut(s) 81, 738
AciI CCGC 2 cut(s) 85, 283
AfaI GTAC 2 cut(s) 725, 804
AfiI CCNNNNNNNGG 3 cut(s) 57, 294, 799
AgsI TTSAA 2 cut(s) 661, 901
AhlI ACTAGT 1 cut(s) 934
AjnI CCWGG 1 cut(s) 118
AleI CACNNNNGTG 1 cut(s) 399
AluBI AGCT 5 cut(s) 14, 37, 110, 155, 207
AluI AGCT 5 cut(s) 14, 37, 110, 155, 207
Alw21I GWGCWC 2 cut(s) 39, 214
Alw26I GTCTC 2 cut(s) 452, 698
AoxI GGCC 2 cut(s) 285, 332
ApeKI GCWGC 3 cut(s) 155, 864, 915
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 3 cut(s) 285, 553, 664
AsuHPI GGTGA 2 cut(s) 314, 833
AsuNHI GCTAGC 1 cut(s) 10
AvaII GGWCC 2 cut(s) 553, 664
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 438
BanI GGYRCC 2 cut(s) 81, 738
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 321, 668
Bbv12I GWGCWC 2 cut(s) 39, 214
BbvI GCAGC 3 cut(s) 142, 876, 902
BccI CCATC 3 cut(s) 485, 565, 809
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 452, 698
BcuI ACTAGT 1 cut(s) 934
BfaI CTAG 3 cut(s) 11, 366, 935
BfmI CTRYAG 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 858
BisI GCNGC 3 cut(s) 156, 865, 916
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 3 cut(s) 157, 866, 917
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 553, 664
BmgT120I GGNCC 3 cut(s) 285, 553, 664
BmiI GGNNCC 7 cut(s) 62, 83, 117, 360, 555, 666, 740
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 265, 593
BmtI GCTAGC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 321, 668
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 4 cut(s) 23, 80, 276, 680
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 3 cut(s) 240, 365, 628
Bsc4I CCNNNNNNNGG 3 cut(s) 57, 294, 799
Bse1I ACTGG 2 cut(s) 304, 481
Bse21I CCTNAGG 1 cut(s) 438
Bse3DI GCAATG 1 cut(s) 736
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 240, 365, 628
BseGI GGATG 3 cut(s) 448, 523, 850
BseLI CCNNNNNNNGG 3 cut(s) 57, 294, 799
BseMI GCAATG 1 cut(s) 736
BseMII CTCAG 3 cut(s) 179, 243, 429
BseNI ACTGG 2 cut(s) 304, 481
BseRI GAGGAG 3 cut(s) 401, 440, 560
BseXI GCAGC 3 cut(s) 142, 876, 902
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 287, 334
BshNI GGYRCC 2 cut(s) 81, 738
BsiHKAI GWGCWC 2 cut(s) 39, 214
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 3 cut(s) 57, 294, 799
BsmAI GTCTC 2 cut(s) 452, 698
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 2 cut(s) 287, 334
Bso31I GGTCTC 1 cut(s) 698
Bsp1286I GDGCHC 2 cut(s) 39, 214
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 2 cut(s) 85, 283
BspANI GGCC 2 cut(s) 287, 334
BspCNI CTCAG 3 cut(s) 178, 244, 430
BspLI GGNNCC 7 cut(s) 62, 83, 117, 360, 555, 666, 740
BspMI ACCTGC 1 cut(s) 858
BspOI GCTAGC 1 cut(s) 14
BspT107I GGYRCC 2 cut(s) 81, 738
BspTNI GGTCTC 1 cut(s) 698
BsrDI GCAATG 1 cut(s) 736
BsrI ACTGG 2 cut(s) 304, 481
BssECI CCNNGG 3 cut(s) 240, 365, 628
BssT1I CCWWGG 3 cut(s) 240, 365, 628
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 755
BstC8I GCNNGC 4 cut(s) 12, 16, 285, 498
BstDEI CTNAG 3 cut(s) 165, 252, 438
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 3 cut(s) 448, 523, 850
BstHHI GCGC 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 452, 698
BstMWI GCNNNNNNNGC 5 cut(s) 20, 152, 161, 356, 573
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 500, 619
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 142, 876, 902
BstV2I GAAGAC 2 cut(s) 321, 668
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 2 cut(s) 287, 334
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 3 cut(s) 448, 523, 850
BtsI GCAGTG 1 cut(s) 793
BtsIMutI CAGTG 1 cut(s) 793
BveI ACCTGC 1 cut(s) 858
Cac8I GCNNGC 4 cut(s) 12, 16, 285, 498
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 3 cut(s) 285, 553, 664
Csp6I GTAC 2 cut(s) 724, 803
CviAII CATG 6 cut(s) 248, 497, 561, 607, 616, 629
CviQI GTAC 2 cut(s) 724, 803
DdeI CTNAG 3 cut(s) 165, 252, 438
DraI TTTAAA 1 cut(s) 483
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 3 cut(s) 240, 365, 628
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 553, 664
Eco53kI GAGCTC 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 3 cut(s) 240, 365, 628
EcoT22I ATGCAT 1 cut(s) 608
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 3 cut(s) 240, 365, 628
FaeI CATG 6 cut(s) 251, 500, 564, 610, 619, 632
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 663, 695
FaqI GGGAC 1 cut(s) 310
FatI CATG 6 cut(s) 247, 496, 560, 606, 615, 628
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 1 cut(s) 777
Fnu4HI GCNGC 3 cut(s) 156, 865, 916
FokI GGATG 3 cut(s) 455, 530, 857
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 156, 865, 916
FspBI CTAG 3 cut(s) 11, 366, 935
GlaI GCGC 1 cut(s) 101
GluI GCNGC 3 cut(s) 156, 865, 916
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 2 cut(s) 287, 334
HhaI GCGC 1 cut(s) 102
Hin1II CATG 6 cut(s) 251, 500, 564, 610, 619, 632
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 4 cut(s) 343, 391, 610, 633
HphI GGTGA 2 cut(s) 314, 833
Hpy166II GTNNAC 2 cut(s) 433, 805
Hpy188I TCNGA 2 cut(s) 76, 342
Hpy188III TCNNGA 4 cut(s) 167, 267, 395, 644
Hpy8I GTNNAC 2 cut(s) 433, 805
Hpy99I CGWCG 3 cut(s) 533, 536, 539
HpyAV CCTTC 1 cut(s) 655
HpyCH4III ACNGT 1 cut(s) 755
HpyCH4V TGCA 9 cut(s) 18, 146, 158, 182, 464, 606, 619, 729, 798
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 152, 161, 356, 573
HpyF3I CTNAG 3 cut(s) 165, 252, 438
Hsp92II CATG 6 cut(s) 251, 500, 564, 610, 619, 632
HspAI GCGC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 66, 364
Lsp1109I GCAGC 3 cut(s) 142, 876, 902
LweI GCATC 2 cut(s) 265, 593
MaeI CTAG 3 cut(s) 11, 366, 935
MaeIII GTNAC 5 cut(s) 26, 124, 272, 392, 930
MboII GAAGA 9 cut(s) 320, 323, 326, 416, 533, 628, 668, 839, 842
MhlI GDGCHC 2 cut(s) 39, 214
MluCI AATT 1 cut(s) 378
MlyI GAGTC 2 cut(s) 352, 400
MmeI TCCRAC 2 cut(s) 531, 822
Mph1103I ATGCAT 1 cut(s) 608
MseI TTAA 4 cut(s) 482, 702, 750, 941
MslI CAYNNNNRTG 1 cut(s) 399
MspA1I CMGCKG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 5 cut(s) 20, 152, 161, 356, 573
NcoI CCATGG 1 cut(s) 628
NdeI CATATG 1 cut(s) 777
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 6 cut(s) 251, 500, 564, 610, 619, 632
NlaIV GGNNCC 7 cut(s) 62, 83, 117, 360, 555, 666, 740
NmuCI GTSAC 3 cut(s) 124, 272, 392
NsiI ATGCAT 1 cut(s) 608
NspI RCATGY 2 cut(s) 500, 619
OliI CACNNNNGTG 1 cut(s) 399
PaeI GCATGC 1 cut(s) 500
PcsI WCGNNNNNNNCGW 1 cut(s) 534
PfeI GAWTC 2 cut(s) 610, 633
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 3 cut(s) 157, 866, 917
PleI GAGTC 2 cut(s) 351, 399
PpsI GAGTC 2 cut(s) 351, 399
PpuMI RGGWCCY 1 cut(s) 664
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 7 cut(s) 62, 83, 117, 360, 555, 666, 740
PspPI GGNCC 3 cut(s) 285, 553, 664
PspPPI RGGWCCY 1 cut(s) 664
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PvuII CAGCTG 1 cut(s) 207
RsaI GTAC 2 cut(s) 725, 804
RsaNI GTAC 2 cut(s) 724, 803
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 4 cut(s) 482, 702, 750, 941
SatI GCNGC 3 cut(s) 156, 865, 916
Sau96I GGNCC 3 cut(s) 285, 553, 664
SchI GAGTC 2 cut(s) 352, 400
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 39, 214
SfaNI GCATC 2 cut(s) 265, 593
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 553, 664
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 4 cut(s) 38, 95, 291, 695
SmoI CTYRAG 4 cut(s) 38, 95, 291, 695
SpeI ACTAGT 1 cut(s) 934
SphI GCATGC 1 cut(s) 500
Sse9I AATT 1 cut(s) 378
SsiI CCGC 2 cut(s) 85, 283
SspMI CTAG 3 cut(s) 11, 366, 935
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 3 cut(s) 240, 365, 628
TaaI ACNGT 1 cut(s) 755
TasI AATT 1 cut(s) 378
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 2 cut(s) 610, 633
Tru1I TTAA 4 cut(s) 482, 702, 750, 941
Tru9I TTAA 4 cut(s) 482, 702, 750, 941
TscAI CASTG 1 cut(s) 800
TseFI GTSAC 3 cut(s) 124, 272, 392
TseI GCWGC 3 cut(s) 155, 864, 915
Tsp45I GTSAC 3 cut(s) 124, 272, 392
TspDTI ATGAA 5 cut(s) 201, 321, 534, 628, 840
TspRI CASTG 1 cut(s) 800
VpaK11BI GGWCC 2 cut(s) 553, 664
XceI RCATGY 2 cut(s) 500, 619
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 3 cut(s) 11, 366, 935
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.