Rh6DG447600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013264
Physical Location & Seq
Reverse (-)
62073164 .. 62075765
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG447600.1

Sequence Viewer

Length: 1143 bp
ATGGTTCATCAGGTAGCTGGGGTTCCTGGAGTGACAGAAGCATTGTTTCTTGCAAGACAAGCTGCACTTGCTCAGGAGAAAAATGGTGCAAATGAAACCCCAATGCTCTACAGCTGTGCTCTTTGTGGCAAAGGGTATAGAAGTTCCAAGGCTCATGCTGAGCATCTCAAATCCCGAAGTCACATTATGCGGGCTTCTCAAGGGACTGGTGATGAAGAAGAAGACAAGGCAATAGTCAGGCCACTTCCGAGTCGTGCGAATAAAGCTCCCCCTAGGAGAGAGGAAATTGATGAGGAGAGTCACGAAAGTGGAGATGAGTGGGAGGAGGTTGACCCTGAGGATGAGTTGGTTAGTGAGACTGCAAAATCTTTGACTGGTTTAAATGTAGATGGCCATGCTTCTAATGAGGATATGGATGAAGATGATGATGACGATGACTATGAGGAGTTGGACCCATCATGTTGCTTTATGTGTGATAAAGAGCATAAGACCATAGAGAGATGCATGATTCACATGCACAAACACCATGGATTCTTCATTCCTGATATTGAGTATTTGAAGGACCCGAAAGGTCTTCTTACTTATCTTGGTCTCAAGGTTAAAAGGGATTTTATGTGTCTGTACTGCAATGATAGGTGCCAACCCTTTAACAGTTTGGAAGCAGTTAGGAAGCATATGGTGGCAAAAAGCCACTGCAAGGTACACTATGGAGATGGTGGTGATGAAGAAGAAGCAGAGTTGGATGAGTTCTATGATTACAGCAGCAGTTATGTCGATGAGGCTGGCAAGCAACTAGTTGTATCAGGTGAGACGGCCAACAGTGTCGAACTTGGGAGTGGTGGTGCTGAGCTCATCATTACTACAAGATCTGATCATGGGATATCAAGCAAAGCACTTGGTTCCCGGGAATTTATGCGCTATTATCGCCAGAAGCCACGCCCATCACCTAACCATATGGCCATCACAGCTGCAGTGGCTGCAAGGTACAAGAGCATGGGGTTGGCAACTGTGCAGTCAAAGGAACGAATGGTGCAGCTGAAAGTACTGAAGGAAATGAGAAGATCGGGAGTCGAGGCCATGCGCAGTAAGATGGGAATGAAAAGCAATGTGATCCGAAACCTCCCCAAGAATGTTCCATTCTAG

Protein Analysis

380

Amino Acids

42.6

Weight (kDa)

5.51

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_2 PF12756 155 - 257 2.6e-27 C2H2 type zinc-finger (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24500 AT4G31420 AT4G31420
fragaria_vesca FvH4_2g36910
malus_domestica MD08G1131000.v1.1 MD15G1108800.v1.1
prunus_persica Prupe.1G461000_v2.0.a1
pyrus_communis pycom15g09940
rosa_chinensis RchiOBHm_Chr6g0304871
rosa_laevigata RLG00000010943
rosa_multiflora Rmu_ssc0000278.1_g000006
rosa_roxburghii Rroxscaffold_7G00163390
rosa_rugosa Rorug06G0336000
rosa_samantha Rh6AG447100 Rh6BG454400 Rh6CG460600 Rh6DG447600
rosa_wichuraiana Rw6G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1082
AccB1I GGYRCC 1 cut(s) 636
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 1105
AcoI YGGCCR 3 cut(s) 391, 813, 957
AcsI RAATTY 1 cut(s) 908
AcuI CTGAAG 1 cut(s) 1067
AfaI GTAC 4 cut(s) 623, 702, 986, 1044
AfiI CCNNNNNNNGG 1 cut(s) 697
AgsI TTSAA 1 cut(s) 559
AhlI ACTAGT 1 cut(s) 793
AjnI CCWGG 1 cut(s) 25
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 7 cut(s) 17, 62, 114, 266, 850, 968, 1036
AluI AGCT 7 cut(s) 17, 62, 114, 266, 850, 968, 1036
Alw21I GWGCWC 2 cut(s) 121, 852
Alw26I GTCTC 3 cut(s) 350, 596, 803
AlwI GGATC 1 cut(s) 1105
AlwNI CAGNNNCTG 1 cut(s) 977
Ama87I CYCGRG 1 cut(s) 903
AoxI GGCC 5 cut(s) 239, 391, 813, 957, 1074
ApeKI GCWGC 5 cut(s) 62, 762, 968, 977, 1033
ApoI RAATTY 1 cut(s) 908
AspA2I CCTAGG 1 cut(s) 272
AspLEI GCGC 2 cut(s) 918, 1083
AspS9I GGNCC 2 cut(s) 451, 562
AsuC2I CCSGG 2 cut(s) 904, 905
AsuHPI GGTGA 4 cut(s) 221, 731, 818, 936
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 2 cut(s) 451, 562
AvrII CCTAGG 1 cut(s) 272
AxyI CCTNAGG 1 cut(s) 336
BalI TGGCCA 2 cut(s) 393, 959
BanI GGYRCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 852
BbsI GAAGAC 2 cut(s) 228, 566
Bbv12I GWGCWC 2 cut(s) 121, 852
BbvI GCAGC 5 cut(s) 49, 774, 955, 964, 1045
BccI CCATC 6 cut(s) 383, 463, 707, 949, 968, 1084
BceAI ACGGC 1 cut(s) 828
BcgI CGANNNNNNTGC 2 cut(s) 754, 788
BciT130I CCWGG 1 cut(s) 27
BclI TGATCA 1 cut(s) 871
BcnI CCSGG 2 cut(s) 904, 905
BcoDI GTCTC 3 cut(s) 350, 596, 803
BcuI ACTAGT 1 cut(s) 793
BfaI CTAG 3 cut(s) 273, 794, 1141
BfmI CTRYAG 2 cut(s) 109, 969
BglII AGATCT 1 cut(s) 866
BisI GCNGC 5 cut(s) 63, 763, 969, 978, 1034
BlnI CCTAGG 1 cut(s) 272
BlpI GCTNAGC 2 cut(s) 159, 846
BlsI GCNGC 5 cut(s) 64, 764, 970, 979, 1035
BmcAI AGTACT 1 cut(s) 1044
Bme1390I CCNGG 3 cut(s) 27, 904, 905
Bme18I GGWCC 2 cut(s) 451, 562
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 451, 562
BmiI GGNNCC 5 cut(s) 24, 453, 564, 638, 901
BmrFI CCNGG 3 cut(s) 27, 904, 905
BmsI GCATC 2 cut(s) 172, 491
BpiI GAAGAC 2 cut(s) 228, 566
BpmI CTGGAG 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 72
Bpu1102I GCTNAGC 2 cut(s) 159, 846
BpuEI CTTGAG 2 cut(s) 183, 578
BpuMI CCSGG 2 cut(s) 904, 905
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 4 cut(s) 147, 272, 526, 903
BsaXI ACNNNNNCTCC 2 cut(s) 826, 856
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 211, 379
Bse21I CCTNAGG 1 cut(s) 336
Bse3DI GCAATG 2 cut(s) 634, 1111
BseBI CCWGG 1 cut(s) 27
BseDI CCNNGG 4 cut(s) 147, 272, 526, 903
BseGI GGATG 3 cut(s) 346, 421, 748
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMI GCAATG 2 cut(s) 634, 1111
BseMII CTCAG 4 cut(s) 86, 150, 327, 837
BseNI ACTGG 2 cut(s) 211, 379
BseRI GAGGAG 3 cut(s) 308, 338, 458
BseXI GCAGC 5 cut(s) 49, 774, 955, 964, 1045
BseYI CCCAGC 1 cut(s) 17
BsgI GTGCAG 3 cut(s) 48, 1031, 1052
BshFI GGCC 5 cut(s) 241, 393, 815, 959, 1076
BshNI GGYRCC 1 cut(s) 636
BsiHKAI GWGCWC 2 cut(s) 121, 852
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 1 cut(s) 904
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 3 cut(s) 350, 596, 803
BsmBI CGTCTC 1 cut(s) 803
BsmFI GGGAC 1 cut(s) 217
BsnI GGCC 5 cut(s) 241, 393, 815, 959, 1076
Bso31I GGTCTC 1 cut(s) 596
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 2 cut(s) 121, 852
Bsp143I GATC 4 cut(s) 866, 871, 1061, 1110
Bsp1720I GCTNAGC 2 cut(s) 159, 846
Bsp19I CCATGG 1 cut(s) 526
BspACI CCGC 1 cut(s) 190
BspANI GGCC 5 cut(s) 241, 393, 815, 959, 1076
BspCNI CTCAG 4 cut(s) 85, 151, 328, 838
BspLI GGNNCC 5 cut(s) 24, 453, 564, 638, 901
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 1 cut(s) 1105
BspT107I GGYRCC 1 cut(s) 636
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 634, 1111
BsrI ACTGG 2 cut(s) 211, 379
BssECI CCNNGG 4 cut(s) 147, 272, 526, 903
BssMI GATC 4 cut(s) 866, 871, 1061, 1110
BssT1I CCWWGG 3 cut(s) 147, 272, 526
Bst2UI CCWGG 1 cut(s) 27
Bst4CI ACNGT 3 cut(s) 653, 821, 1009
BstAPI GCANNNNNTGC 1 cut(s) 977
BstC8I GCNNGC 3 cut(s) 192, 784, 788
BstDEI CTNAG 4 cut(s) 72, 159, 336, 846
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 3 cut(s) 346, 421, 748
BstHHI GCGC 2 cut(s) 918, 1083
BstKTI GATC 4 cut(s) 869, 874, 1064, 1113
BstMAI GTCTC 3 cut(s) 350, 596, 803
BstMBI GATC 4 cut(s) 866, 871, 1061, 1110
BstMWI GCNNNNNNNGC 7 cut(s) 59, 68, 263, 924, 965, 974, 977
BstNI CCWGG 1 cut(s) 27
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 3 cut(s) 25, 902, 903
BstSFI CTRYAG 2 cut(s) 109, 969
BstV1I GCAGC 5 cut(s) 49, 774, 955, 964, 1045
BstV2I GAAGAC 2 cut(s) 228, 566
BstX2I RGATCY 1 cut(s) 866
BstYI RGATCY 1 cut(s) 866
Bsu36I CCTNAGG 1 cut(s) 336
BsuRI GGCC 5 cut(s) 241, 393, 815, 959, 1076
BtgI CCRYGG 1 cut(s) 526
BtsCI GGATG 3 cut(s) 346, 421, 748
BtsI GCAGTG 2 cut(s) 691, 978
BtsIMutI CAGTG 3 cut(s) 691, 826, 978
Cac8I GCNNGC 3 cut(s) 192, 784, 788
CaiI CAGNNNCTG 1 cut(s) 977
CfoI GCGC 2 cut(s) 918, 1083
Cfr13I GGNCC 2 cut(s) 451, 562
Cfr9I CCCGGG 1 cut(s) 903
Csp6I GTAC 4 cut(s) 622, 701, 985, 1043
CviAII CATG 9 cut(s) 155, 395, 459, 505, 514, 527, 875, 994, 1078
CviQI GTAC 4 cut(s) 622, 701, 985, 1043
DdeI CTNAG 4 cut(s) 72, 159, 336, 846
DpnI GATC 4 cut(s) 868, 873, 1063, 1112
DpnII GATC 4 cut(s) 866, 871, 1061, 1110
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 3 cut(s) 391, 813, 957
Ecl136II GAGCTC 1 cut(s) 850
Eco130I CCWWGG 3 cut(s) 147, 272, 526
Eco24I GRGCYC 1 cut(s) 852
Eco31I GGTCTC 1 cut(s) 596
Eco32I GATATC 1 cut(s) 882
Eco47I GGWCC 2 cut(s) 451, 562
Eco53kI GAGCTC 1 cut(s) 850
Eco57I CTGAAG 1 cut(s) 1067
Eco81I CCTNAGG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 903
EcoICRI GAGCTC 1 cut(s) 850
EcoO109I RGGNCCY 1 cut(s) 562
EcoRII CCWGG 1 cut(s) 25
EcoRV GATATC 1 cut(s) 882
EcoT14I CCWWGG 3 cut(s) 147, 272, 526
EcoT22I ATGCAT 1 cut(s) 506
EcoT38I GRGCYC 1 cut(s) 852
ErhI CCWWGG 3 cut(s) 147, 272, 526
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 9 cut(s) 158, 398, 462, 508, 517, 530, 878, 997, 1081
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 561, 593
FaqI GGGAC 1 cut(s) 217
FatI CATG 9 cut(s) 154, 394, 458, 504, 513, 526, 874, 993, 1077
FauI CCCGC 1 cut(s) 183
FauNDI CATATG 2 cut(s) 675, 954
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 5 cut(s) 63, 763, 969, 978, 1034
FokI GGATG 3 cut(s) 353, 428, 755
FriOI GRGCYC 1 cut(s) 852
Fsp4HI GCNGC 5 cut(s) 63, 763, 969, 978, 1034
FspBI CTAG 3 cut(s) 273, 794, 1141
FspI TGCGCA 1 cut(s) 1082
GlaI GCGC 2 cut(s) 917, 1082
GluI GCNGC 5 cut(s) 63, 763, 969, 978, 1034
GsaI CCCAGC 1 cut(s) 21
GsuI CTGGAG 1 cut(s) 48
HaeIII GGCC 5 cut(s) 241, 393, 815, 959, 1076
HapII CCGG 1 cut(s) 904
HhaI GCGC 2 cut(s) 918, 1083
Hin1II CATG 9 cut(s) 158, 398, 462, 508, 517, 530, 878, 997, 1081
Hin6I GCGC 2 cut(s) 916, 1081
HinP1I GCGC 2 cut(s) 916, 1081
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HinfI GANTC 5 cut(s) 250, 298, 508, 531, 1068
HpaII CCGG 1 cut(s) 904
HphI GGTGA 4 cut(s) 221, 731, 818, 936
Hpy166II GTNNAC 2 cut(s) 331, 703
Hpy188I TCNGA 3 cut(s) 249, 871, 1115
Hpy188III TCNNGA 5 cut(s) 74, 174, 302, 542, 1065
Hpy8I GTNNAC 2 cut(s) 331, 703
HpyAV CCTTC 2 cut(s) 553, 1042
HpyCH4III ACNGT 3 cut(s) 653, 821, 1009
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 68, 263, 924, 965, 974, 977
HpyF3I CTNAG 4 cut(s) 72, 159, 336, 846
Hsp92II CATG 9 cut(s) 158, 398, 462, 508, 517, 530, 878, 997, 1081
HspAI GCGC 2 cut(s) 916, 1081
Ksp22I TGATCA 1 cut(s) 871
Kzo9I GATC 4 cut(s) 866, 871, 1061, 1110
LmnI GCTCC 1 cut(s) 271
Lsp1109I GCAGC 5 cut(s) 49, 774, 955, 964, 1045
LweI GCATC 2 cut(s) 172, 491
MaeI CTAG 3 cut(s) 273, 794, 1141
MaeIII GTNAC 3 cut(s) 31, 179, 299
MalI GATC 4 cut(s) 868, 873, 1063, 1112
MboI GATC 4 cut(s) 866, 871, 1061, 1110
MboII GAAGA 9 cut(s) 227, 230, 233, 431, 526, 566, 737, 740, 1071
MflI RGATCY 1 cut(s) 866
MhlI GDGCHC 2 cut(s) 121, 852
MlsI TGGCCA 2 cut(s) 393, 959
MluCI AATT 2 cut(s) 285, 908
MluNI TGGCCA 2 cut(s) 393, 959
MlyI GAGTC 3 cut(s) 259, 307, 1077
MmeI TCCRAC 2 cut(s) 429, 720
Mox20I TGGCCA 2 cut(s) 393, 959
Mph1103I ATGCAT 1 cut(s) 506
MscI TGGCCA 2 cut(s) 393, 959
MseI TTAA 3 cut(s) 380, 600, 648
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 2 cut(s) 393, 959
MspA1I CMGCKG 3 cut(s) 114, 968, 1036
MspI CCGG 1 cut(s) 904
MspR9I CCNGG 3 cut(s) 27, 904, 905
MvaI CCWGG 1 cut(s) 27
MwoI GCNNNNNNNGC 7 cut(s) 59, 68, 263, 924, 965, 974, 977
NciI CCSGG 2 cut(s) 904, 905
NcoI CCATGG 1 cut(s) 526
NdeI CATATG 2 cut(s) 675, 954
NdeII GATC 4 cut(s) 866, 871, 1061, 1110
NlaIII CATG 9 cut(s) 158, 398, 462, 508, 517, 530, 878, 997, 1081
NlaIV GGNNCC 5 cut(s) 24, 453, 564, 638, 901
NmuCI GTSAC 3 cut(s) 31, 179, 299
NsbI TGCGCA 1 cut(s) 1082
NsiI ATGCAT 1 cut(s) 506
NspI RCATGY 1 cut(s) 517
OliI CACNNNNGTG 1 cut(s) 306
PfeI GAWTC 2 cut(s) 508, 531
PfoI TCCNGGA 1 cut(s) 25
PkrI GCNGC 5 cut(s) 64, 764, 970, 979, 1035
PleI GAGTC 3 cut(s) 258, 306, 1076
PpsI GAGTC 3 cut(s) 258, 306, 1076
PpuMI RGGWCCY 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 852
Psp5II RGGWCCY 1 cut(s) 562
Psp6I CCWGG 1 cut(s) 25
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 25
PspN4I GGNNCC 5 cut(s) 24, 453, 564, 638, 901
PspPI GGNCC 2 cut(s) 451, 562
PspPPI RGGWCCY 1 cut(s) 562
PsrI GAACNNNNNNTAC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 973
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 1 cut(s) 866
PvuII CAGCTG 3 cut(s) 114, 968, 1036
RsaI GTAC 4 cut(s) 623, 702, 986, 1044
RsaNI GTAC 4 cut(s) 622, 701, 985, 1043
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 852
SaqAI TTAA 3 cut(s) 380, 600, 648
SatI GCNGC 5 cut(s) 63, 763, 969, 978, 1034
Sau3AI GATC 4 cut(s) 866, 871, 1061, 1110
Sau96I GGNCC 2 cut(s) 451, 562
ScaI AGTACT 1 cut(s) 1044
SchI GAGTC 3 cut(s) 259, 307, 1077
ScrFI CCNGG 3 cut(s) 27, 904, 905
SduI GDGCHC 2 cut(s) 121, 852
SfaNI GCATC 2 cut(s) 172, 491
SfcI CTRYAG 2 cut(s) 109, 969
SinI GGWCC 2 cut(s) 451, 562
SmaI CCCGGG 1 cut(s) 905
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 2 cut(s) 198, 593
SmoI CTYRAG 2 cut(s) 198, 593
SpeI ACTAGT 1 cut(s) 793
Sse9I AATT 2 cut(s) 285, 908
SsiI CCGC 1 cut(s) 190
SspMI CTAG 3 cut(s) 273, 794, 1141
SstI GAGCTC 1 cut(s) 852
StyD4I CCNGG 3 cut(s) 25, 902, 903
StyI CCWWGG 3 cut(s) 147, 272, 526
TaaI ACNGT 3 cut(s) 653, 821, 1009
TaqI TCGA 3 cut(s) 774, 825, 1071
TasI AATT 2 cut(s) 285, 908
TatI WGTACW 2 cut(s) 621, 1042
TfiI GAWTC 2 cut(s) 508, 531
Tru1I TTAA 3 cut(s) 380, 600, 648
Tru9I TTAA 3 cut(s) 380, 600, 648
TscAI CASTG 3 cut(s) 698, 826, 978
TseFI GTSAC 3 cut(s) 31, 179, 299
TseI GCWGC 5 cut(s) 62, 762, 968, 977, 1033
Tsp45I GTSAC 3 cut(s) 31, 179, 299
TspDTI ATGAA 6 cut(s) 108, 228, 432, 526, 738, 1112
TspMI CCCGGG 1 cut(s) 903
TspRI CASTG 3 cut(s) 698, 826, 978
VpaK11BI GGWCC 2 cut(s) 451, 562
XapI RAATTY 1 cut(s) 908
XceI RCATGY 1 cut(s) 517
XmaI CCCGGG 1 cut(s) 903
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 3 cut(s) 273, 794, 1141
ZrmI AGTACT 1 cut(s) 1044
Zsp2I ATGCAT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.