Rh6CG460600

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013264
Physical Location & Seq
Reverse (-)
63468269 .. 63470794
2526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG460600.1

Sequence Viewer

Length: 957 bp
ATGTCAGGGCTAGCTTGCAACGCCTGTAACAAAGAGCTCAAGGACGACACCGAGCAGAGGCTCCATTACAAGTCCGAATGGCACCGCTACAACCTCAAGCGCAAGGTAGCTGGGGTTCCTGGAGTGACAGAAGCATTGTTTCTTGCAAGACAAGCTGCACTTGCTCAGGAGAAAAATGGTGCAAATGAAACCCCAATGCTCTACAGCTGTGCTCTTTGTGGCAAAGGGTATAGAAGTTCCAAGGCTCATGCTGAGCATCTCAAATCACGAAGTCACATTATGCGGGCTTCTCAAGGGACTGGTGATGAAGAAGAAGACAAGGCAATAGTCAGGCCACTTCCGAGTCGTGCGAATAAAGCTCCCCCTAGGAGAGAGGAAATTGATGAGGAGAGTGAAGAAAGTGGAGATGAGTGGGAGGAGGTTGACCCTGAGGATGAGTTGGTTAGTGAGACTGCAAAATCTTTGACTGGTTTAAATGTAGATGGGCATGCTTCTAATGAGGATATGGATGAAGATGACGATGACGATGACGATGACTATGAGGAGTTGGACCCATCATGTTGCTTTATGTGCGATAAAGAGCATAAGACCATAGAGAGATGCATGATTCACATGCACAAACACCATGGATTCTTCATTCCTGATATTGAGTATTTGAAGGACCCGAAAGGTCTTCTTACTTATCTTGGTCTCAAGGTTAAAAGGGATTTCATGTGTCTGTACTGCAATGATAGGTGCCAACCCTTTAACAGTTTGGAAGCAGTTAGGAAGCATATGGTGGCAAAAAGCCACTGCAAGGTACACTATGGAGATGGTGGTGATGAAGAAGAAGCAGAGTTGGATGAGTTCTATGATTACAGCAGCAGGTTTTGTTCTTTCTCATACACTGGCTTGTTCAATACTTATATTGGCTGCTATTTTGTTATGTTACTAGTTTTAAGCATTAGTTTATGTTAG

Protein Analysis

318

Amino Acids

36.28

Weight (kDa)

4.89

Isoelectric Point (pI)

54.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_2 PF12756 188 - 288 6.9e-27 C2H2 type zinc-finger (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24500 AT4G31420 AT4G31420
fragaria_vesca FvH4_2g36910
malus_domestica MD08G1131000.v1.1 MD15G1108800.v1.1
prunus_persica Prupe.1G461000_v2.0.a1
pyrus_communis pycom15g09940
rosa_chinensis RchiOBHm_Chr6g0304871
rosa_laevigata RLG00000010943
rosa_multiflora Rmu_ssc0000278.1_g000006
rosa_roxburghii Rroxscaffold_7G00163390
rosa_rugosa Rorug06G0336000
rosa_samantha Rh6AG447100 Rh6BG454400 Rh6CG460600 Rh6DG447600
rosa_wichuraiana Rw6G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 855
AccB1I GGYRCC 2 cut(s) 81, 735
AciI CCGC 2 cut(s) 85, 283
AfaI GTAC 2 cut(s) 722, 801
AfiI CCNNNNNNNGG 2 cut(s) 57, 796
AgsI TTSAA 2 cut(s) 658, 898
AhlI ACTAGT 1 cut(s) 931
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 6 cut(s) 14, 37, 110, 155, 207, 359
AluI AGCT 6 cut(s) 14, 37, 110, 155, 207, 359
Alw21I GWGCWC 2 cut(s) 39, 214
Alw26I GTCTC 2 cut(s) 443, 695
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 3 cut(s) 155, 861, 912
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 1 cut(s) 102
AspS9I GGNCC 2 cut(s) 550, 661
AsuHPI GGTGA 2 cut(s) 314, 830
AsuNHI GCTAGC 1 cut(s) 10
AvaII GGWCC 2 cut(s) 550, 661
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 429
BanI GGYRCC 2 cut(s) 81, 735
BanII GRGCYC 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 321, 665
Bbv12I GWGCWC 2 cut(s) 39, 214
BbvI GCAGC 3 cut(s) 142, 873, 899
BccI CCATC 3 cut(s) 476, 562, 806
BciT130I CCWGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 443, 695
BcuI ACTAGT 1 cut(s) 931
BfaI CTAG 3 cut(s) 11, 366, 932
BfmI CTRYAG 1 cut(s) 202
BfuAI ACCTGC 1 cut(s) 855
BisI GCNGC 3 cut(s) 156, 862, 913
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 3 cut(s) 157, 863, 914
Bme1390I CCNGG 1 cut(s) 120
Bme18I GGWCC 2 cut(s) 550, 661
BmgT120I GGNCC 2 cut(s) 550, 661
BmiI GGNNCC 6 cut(s) 62, 83, 117, 552, 663, 737
BmrFI CCNGG 1 cut(s) 120
BmsI GCATC 2 cut(s) 265, 590
BmtI GCTAGC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 321, 665
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 4 cut(s) 23, 80, 276, 677
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 3 cut(s) 240, 365, 625
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 796
Bse1I ACTGG 3 cut(s) 304, 472, 892
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 1 cut(s) 733
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 3 cut(s) 240, 365, 625
BseGI GGATG 3 cut(s) 439, 514, 847
BseLI CCNNNNNNNGG 2 cut(s) 57, 796
BseMI GCAATG 1 cut(s) 733
BseMII CTCAG 3 cut(s) 179, 243, 420
BseNI ACTGG 3 cut(s) 304, 472, 892
BseRI GAGGAG 3 cut(s) 401, 431, 557
BseXI GCAGC 3 cut(s) 142, 873, 899
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 334
BshNI GGYRCC 2 cut(s) 81, 735
BsiHKAI GWGCWC 2 cut(s) 39, 214
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 57, 796
BsmAI GTCTC 2 cut(s) 443, 695
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 1 cut(s) 334
Bso31I GGTCTC 1 cut(s) 695
Bsp1286I GDGCHC 2 cut(s) 39, 214
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp19I CCATGG 1 cut(s) 625
BspACI CCGC 2 cut(s) 85, 283
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 3 cut(s) 178, 244, 421
BspLI GGNNCC 6 cut(s) 62, 83, 117, 552, 663, 737
BspMI ACCTGC 1 cut(s) 855
BspOI GCTAGC 1 cut(s) 14
BspT107I GGYRCC 2 cut(s) 81, 735
BspTNI GGTCTC 1 cut(s) 695
BsrDI GCAATG 1 cut(s) 733
BsrI ACTGG 3 cut(s) 304, 472, 892
BssECI CCNNGG 3 cut(s) 240, 365, 625
BssT1I CCWWGG 3 cut(s) 240, 365, 625
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 752
BstC8I GCNNGC 4 cut(s) 12, 16, 285, 489
BstDEI CTNAG 3 cut(s) 165, 252, 429
BstDSI CCRYGG 1 cut(s) 625
BstF5I GGATG 3 cut(s) 439, 514, 847
BstHHI GCGC 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 443, 695
BstMWI GCNNNNNNNGC 5 cut(s) 20, 152, 161, 356, 570
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 491, 616
BstSCI CCNGG 1 cut(s) 118
BstSFI CTRYAG 1 cut(s) 202
BstV1I GCAGC 3 cut(s) 142, 873, 899
BstV2I GAAGAC 2 cut(s) 321, 665
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 625
BtsCI GGATG 3 cut(s) 439, 514, 847
BtsI GCAGTG 1 cut(s) 790
BtsIMutI CAGTG 2 cut(s) 790, 885
BveI ACCTGC 1 cut(s) 855
Cac8I GCNNGC 4 cut(s) 12, 16, 285, 489
CfoI GCGC 1 cut(s) 102
Cfr13I GGNCC 2 cut(s) 550, 661
Csp6I GTAC 2 cut(s) 721, 800
CviAII CATG 7 cut(s) 248, 488, 558, 604, 613, 626, 712
CviQI GTAC 2 cut(s) 721, 800
DdeI CTNAG 3 cut(s) 165, 252, 429
DraI TTTAAA 1 cut(s) 474
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 3 cut(s) 240, 365, 625
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 695
Eco47I GGWCC 2 cut(s) 550, 661
Eco53kI GAGCTC 1 cut(s) 37
Eco81I CCTNAGG 1 cut(s) 429
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 118
EcoT14I CCWWGG 3 cut(s) 240, 365, 625
EcoT22I ATGCAT 1 cut(s) 605
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 3 cut(s) 240, 365, 625
FaeI CATG 7 cut(s) 251, 491, 561, 607, 616, 629, 715
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 660, 692
FaqI GGGAC 1 cut(s) 310
FatI CATG 7 cut(s) 247, 487, 557, 603, 612, 625, 711
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 1 cut(s) 774
Fnu4HI GCNGC 3 cut(s) 156, 862, 913
FokI GGATG 3 cut(s) 446, 521, 854
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 156, 862, 913
FspBI CTAG 3 cut(s) 11, 366, 932
GlaI GCGC 1 cut(s) 101
GluI GCNGC 3 cut(s) 156, 862, 913
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 1 cut(s) 334
HhaI GCGC 1 cut(s) 102
Hin1II CATG 7 cut(s) 251, 491, 561, 607, 616, 629, 715
Hin6I GCGC 1 cut(s) 100
HinP1I GCGC 1 cut(s) 100
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 343, 607, 630
HphI GGTGA 2 cut(s) 314, 830
Hpy166II GTNNAC 2 cut(s) 424, 802
Hpy188I TCNGA 2 cut(s) 76, 342
Hpy188III TCNNGA 3 cut(s) 167, 267, 641
Hpy8I GTNNAC 2 cut(s) 424, 802
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 1 cut(s) 752
HpyCH4V TGCA 9 cut(s) 18, 146, 158, 182, 455, 603, 616, 726, 795
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 152, 161, 356, 570
HpyF3I CTNAG 3 cut(s) 165, 252, 429
Hsp92II CATG 7 cut(s) 251, 491, 561, 607, 616, 629, 715
HspAI GCGC 1 cut(s) 100
LmnI GCTCC 2 cut(s) 66, 364
Lsp1109I GCAGC 3 cut(s) 142, 873, 899
LweI GCATC 2 cut(s) 265, 590
MaeI CTAG 3 cut(s) 11, 366, 932
MaeIII GTNAC 4 cut(s) 26, 124, 272, 927
MboII GAAGA 9 cut(s) 320, 323, 326, 407, 524, 625, 665, 836, 839
MhlI GDGCHC 2 cut(s) 39, 214
MluCI AATT 1 cut(s) 378
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 528, 819
MnlI CCTC 9 cut(s) 51, 104, 367, 379, 409, 412, 424, 493, 535
Mph1103I ATGCAT 1 cut(s) 605
MseI TTAA 4 cut(s) 473, 699, 747, 938
MspA1I CMGCKG 1 cut(s) 207
MspR9I CCNGG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 5 cut(s) 20, 152, 161, 356, 570
NcoI CCATGG 1 cut(s) 625
NdeI CATATG 1 cut(s) 774
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 7 cut(s) 251, 491, 561, 607, 616, 629, 715
NlaIV GGNNCC 6 cut(s) 62, 83, 117, 552, 663, 737
NmuCI GTSAC 2 cut(s) 124, 272
NsiI ATGCAT 1 cut(s) 605
NspI RCATGY 2 cut(s) 491, 616
PaeI GCATGC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 607, 630
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 3 cut(s) 157, 863, 914
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 6 cut(s) 62, 83, 117, 552, 663, 737
PspPI GGNCC 2 cut(s) 550, 661
PspPPI RGGWCCY 1 cut(s) 661
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PvuII CAGCTG 1 cut(s) 207
RsaI GTAC 2 cut(s) 722, 801
RsaNI GTAC 2 cut(s) 721, 800
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 4 cut(s) 473, 699, 747, 938
SatI GCNGC 3 cut(s) 156, 862, 913
Sau96I GGNCC 2 cut(s) 550, 661
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 1 cut(s) 120
SduI GDGCHC 2 cut(s) 39, 214
SfaNI GCATC 2 cut(s) 265, 590
SfcI CTRYAG 1 cut(s) 202
SinI GGWCC 2 cut(s) 550, 661
SmlI CTYRAG 4 cut(s) 38, 95, 291, 692
SmoI CTYRAG 4 cut(s) 38, 95, 291, 692
SpeI ACTAGT 1 cut(s) 931
SphI GCATGC 1 cut(s) 491
Sse9I AATT 1 cut(s) 378
SsiI CCGC 2 cut(s) 85, 283
SspMI CTAG 3 cut(s) 11, 366, 932
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 118
StyI CCWWGG 3 cut(s) 240, 365, 625
TaaI ACNGT 1 cut(s) 752
TasI AATT 1 cut(s) 378
TatI WGTACW 1 cut(s) 720
TfiI GAWTC 2 cut(s) 607, 630
Tru1I TTAA 4 cut(s) 473, 699, 747, 938
Tru9I TTAA 4 cut(s) 473, 699, 747, 938
TscAI CASTG 2 cut(s) 797, 892
TseFI GTSAC 2 cut(s) 124, 272
TseI GCWGC 3 cut(s) 155, 861, 912
Tsp45I GTSAC 2 cut(s) 124, 272
TspDTI ATGAA 6 cut(s) 201, 321, 525, 625, 700, 837
TspRI CASTG 2 cut(s) 797, 892
VpaK11BI GGWCC 2 cut(s) 550, 661
XceI RCATGY 2 cut(s) 491, 616
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 3 cut(s) 11, 366, 932
Zsp2I ATGCAT 1 cut(s) 605
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.