RLG00000010943

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0013264
Physical Location & Seq
Forward (+)
5554883 .. 5556989
2107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010943

Sequence Viewer

Length: 1245 bp
ATGTCAGGGCTAGCTTGCAACGCCTGTAACAAAGAGCTCAAGGACGACACCGAGCAGAGGCTCCATTACAAGTCCGAATGGCACCGCTACAACCTCAAGCGCAAGGTAGCTGGGGTTCCTGGAGTGACAGAAGCATTGTTTCTTGCAAGACAAGCTGCACTTGCTCAGGAGAAAAATGGTGCAAATGAAACCCCAATGCTCTACAGCTGTGCTCTTTGTGCCAAAGGGTATAGAAGTTCCAAGGCTCATGCTGAGCATCTCAAATCACGAAGTCACATTATGCGGGCTTCTCAAGGGACTGGTGATGAAGAAGAAGACAAGGCGATAGTCAGGCCACTTCCGAGTCGTGCAAATAAAGCTCCCCCTAGGAGAGAGGAAATTGATGAGGAAAGTGGTGAAAGTGAAGAAAGTGGAGATGAGTGGGAGGAGGTTGACCCTGAGGATGAGTTGGTTAGTGAGACTGCAAAATCTTTGACTGGTTTAAATGTAGATGGGCATGCTTCTAATGAGGATATGGATGAAGATGATGATGACGATGACTATGAGGAGTTGGACCCATCATGTTGCTTTATGTGCGATAAAGAGCATAAGACCATAGAGAGATGCATGATTCACATGCACAAACACCATGGATTCTTCATTCCTGATATTGAGTATTTGAAGGACCCGAAAGGTCTTCTTACTTATCTTGGTCTTAAGGTTAAAAGGGATTTTATGTGTCTGTACTGCAATGATAGGTGCCAACCCTTTAACAGTTTGGAAGCAGTTAGGAAGCATATGGTGGCAAAAAGCCACTGCAAGGTACACTATGGAGATGGTGGTGATGAAGAAGAAGCAGAGTTGGATGAGTTCTATGATTACAGCAGCAGTTATGTCGATGAGGCTGGCAAGCAACTAGTTGTATCAGGTGAGACGACCAACAGTGTCGAACTTGGGAGTGGTGGTGCTGAGCTCATCATTACTACAAGATCTGATCATGGGATATCAAGCAAAGCACTTGGTTCCCGGGAATTTATGCGCTATTATCGCCAGAAACCACGCCCATCACCTAACCATATGGCCATCACAGCTGCAGTGGCTGCAAGGTACAAGAGCATGGGGTTGGCAACTGTGCAGTCAAAGGAACGAATGGTGCAGCTGAAAGTACTGAAGGAAATGAGAAGATCAGGAGTTGAGGCCATGCGCAGTAAGATGGGAATGAAAAGCAATGTGATCCGAAACCTCCCCAAGAATGTTCCATTCTAG

Protein Analysis

415

Amino Acids

46.66

Weight (kDa)

5.6

Isoelectric Point (pI)

54.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_2 PF12756 189 - 291 3.1e-27 C2H2 type zinc-finger (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24500 AT4G31420 AT4G31420
fragaria_vesca FvH4_2g36910
malus_domestica MD08G1131000.v1.1 MD15G1108800.v1.1
prunus_persica Prupe.1G461000_v2.0.a1
pyrus_communis pycom15g09940
rosa_chinensis RchiOBHm_Chr6g0304871
rosa_laevigata RLG00000010943
rosa_multiflora Rmu_ssc0000278.1_g000006
rosa_roxburghii Rroxscaffold_7G00163390
rosa_rugosa Rorug06G0336000
rosa_samantha Rh6AG447100 Rh6BG454400 Rh6CG460600 Rh6DG447600
rosa_wichuraiana Rw6G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1184
AccB1I GGYRCC 2 cut(s) 81, 738
AciI CCGC 2 cut(s) 85, 283
AclWI GGATC 1 cut(s) 1207
AcoI YGGCCR 1 cut(s) 1059
AcsI RAATTY 1 cut(s) 1010
AcuI CTGAAG 1 cut(s) 1169
AfaI GTAC 4 cut(s) 725, 804, 1088, 1146
AfiI CCNNNNNNNGG 2 cut(s) 57, 799
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 1 cut(s) 661
AhlI ACTAGT 1 cut(s) 895
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 9 cut(s) 14, 37, 110, 155, 207, 359, 952, 1070, 1138
AluI AGCT 9 cut(s) 14, 37, 110, 155, 207, 359, 952, 1070, 1138
Alw21I GWGCWC 3 cut(s) 39, 214, 954
Alw26I GTCTC 2 cut(s) 452, 905
AlwI GGATC 1 cut(s) 1207
AlwNI CAGNNNCTG 1 cut(s) 1079
Ama87I CYCGRG 1 cut(s) 1005
AoxI GGCC 3 cut(s) 332, 1059, 1176
ApeKI GCWGC 5 cut(s) 155, 864, 1070, 1079, 1135
ApoI RAATTY 1 cut(s) 1010
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 3 cut(s) 102, 1020, 1185
AspS9I GGNCC 2 cut(s) 553, 664
AsuC2I CCSGG 2 cut(s) 1006, 1007
AsuHPI GGTGA 5 cut(s) 314, 407, 833, 920, 1038
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 1005
AvaII GGWCC 2 cut(s) 553, 664
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 438
BalI TGGCCA 1 cut(s) 1061
BanI GGYRCC 2 cut(s) 81, 738
BanII GRGCYC 2 cut(s) 39, 954
BbsI GAAGAC 2 cut(s) 321, 668
Bbv12I GWGCWC 3 cut(s) 39, 214, 954
BbvI GCAGC 5 cut(s) 142, 876, 1057, 1066, 1147
BccI CCATC 6 cut(s) 485, 565, 809, 1051, 1070, 1186
BcgI CGANNNNNNTGC 2 cut(s) 856, 890
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 2 cut(s) 1006, 1007
BcoDI GTCTC 2 cut(s) 452, 905
BcuI ACTAGT 1 cut(s) 895
BfaI CTAG 4 cut(s) 11, 366, 896, 1243
BfmI CTRYAG 2 cut(s) 202, 1071
BfrI CTTAAG 1 cut(s) 695
BglII AGATCT 1 cut(s) 968
BisI GCNGC 5 cut(s) 156, 865, 1071, 1080, 1136
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 2 cut(s) 252, 948
BlsI GCNGC 5 cut(s) 157, 866, 1072, 1081, 1137
BmcAI AGTACT 1 cut(s) 1146
Bme1390I CCNGG 3 cut(s) 120, 1006, 1007
Bme18I GGWCC 2 cut(s) 553, 664
BmeT110I CYCGRG 1 cut(s) 1005
BmgT120I GGNCC 2 cut(s) 553, 664
BmiI GGNNCC 7 cut(s) 62, 83, 117, 555, 666, 740, 1003
BmrFI CCNGG 3 cut(s) 120, 1006, 1007
BmsI GCATC 2 cut(s) 265, 593
BmtI GCTAGC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 321, 668
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 2 cut(s) 252, 948
BpuEI CTTGAG 3 cut(s) 23, 80, 276
BpuMI CCSGG 2 cut(s) 1006, 1007
BsaJI CCNNGG 4 cut(s) 240, 365, 628, 1005
BsaXI ACNNNNNCTCC 2 cut(s) 928, 958
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 799
Bse1I ACTGG 2 cut(s) 304, 481
Bse21I CCTNAGG 1 cut(s) 438
Bse3DI GCAATG 2 cut(s) 736, 1213
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 240, 365, 628, 1005
BseGI GGATG 3 cut(s) 448, 523, 850
BseLI CCNNNNNNNGG 2 cut(s) 57, 799
BseMI GCAATG 2 cut(s) 736, 1213
BseMII CTCAG 4 cut(s) 179, 243, 429, 939
BseNI ACTGG 2 cut(s) 304, 481
BseRI GAGGAG 2 cut(s) 440, 560
BseXI GCAGC 5 cut(s) 142, 876, 1057, 1066, 1147
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 3 cut(s) 141, 1133, 1154
BshFI GGCC 3 cut(s) 334, 1061, 1178
BshNI GGYRCC 2 cut(s) 81, 738
BsiHKAI GWGCWC 3 cut(s) 39, 214, 954
BsiHKCI CYCGRG 1 cut(s) 1005
BsiSI CCGG 1 cut(s) 1006
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 57, 799
BsmAI GTCTC 2 cut(s) 452, 905
BsmBI CGTCTC 1 cut(s) 905
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 3 cut(s) 334, 1061, 1178
BsoBI CYCGRG 1 cut(s) 1005
Bsp1286I GDGCHC 3 cut(s) 39, 214, 954
Bsp143I GATC 4 cut(s) 968, 973, 1163, 1212
Bsp1720I GCTNAGC 2 cut(s) 252, 948
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 2 cut(s) 85, 283
BspANI GGCC 3 cut(s) 334, 1061, 1178
BspCNI CTCAG 4 cut(s) 178, 244, 430, 940
BspLI GGNNCC 7 cut(s) 62, 83, 117, 555, 666, 740, 1003
BspMAI CTGCAG 1 cut(s) 1075
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 1207
BspT107I GGYRCC 2 cut(s) 81, 738
BspTI CTTAAG 1 cut(s) 695
BsrDI GCAATG 2 cut(s) 736, 1213
BsrI ACTGG 2 cut(s) 304, 481
BssECI CCNNGG 4 cut(s) 240, 365, 628, 1005
BssMI GATC 4 cut(s) 968, 973, 1163, 1212
BssT1I CCWWGG 3 cut(s) 240, 365, 628
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 755, 923, 1111
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstC8I GCNNGC 6 cut(s) 12, 16, 285, 498, 886, 890
BstDEI CTNAG 4 cut(s) 165, 252, 438, 948
BstDSI CCRYGG 1 cut(s) 628
BstF5I GGATG 3 cut(s) 448, 523, 850
BstHHI GCGC 3 cut(s) 102, 1020, 1185
BstKTI GATC 4 cut(s) 971, 976, 1166, 1215
BstMAI GTCTC 2 cut(s) 452, 905
BstMBI GATC 4 cut(s) 968, 973, 1163, 1212
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 500, 619
BstSCI CCNGG 3 cut(s) 118, 1004, 1005
BstSFI CTRYAG 2 cut(s) 202, 1071
BstV1I GCAGC 5 cut(s) 142, 876, 1057, 1066, 1147
BstV2I GAAGAC 2 cut(s) 321, 668
BstX2I RGATCY 1 cut(s) 968
BstYI RGATCY 1 cut(s) 968
Bsu36I CCTNAGG 1 cut(s) 438
BsuRI GGCC 3 cut(s) 334, 1061, 1178
BtgI CCRYGG 1 cut(s) 628
BtsCI GGATG 3 cut(s) 448, 523, 850
BtsI GCAGTG 2 cut(s) 793, 1080
BtsIMutI CAGTG 3 cut(s) 793, 928, 1080
Cac8I GCNNGC 6 cut(s) 12, 16, 285, 498, 886, 890
CaiI CAGNNNCTG 1 cut(s) 1079
CfoI GCGC 3 cut(s) 102, 1020, 1185
Cfr13I GGNCC 2 cut(s) 553, 664
Cfr9I CCCGGG 1 cut(s) 1005
Csp6I GTAC 4 cut(s) 724, 803, 1087, 1145
CviAII CATG 9 cut(s) 248, 497, 561, 607, 616, 629, 977, 1096, 1180
CviQI GTAC 4 cut(s) 724, 803, 1087, 1145
DdeI CTNAG 4 cut(s) 165, 252, 438, 948
DpnI GATC 4 cut(s) 970, 975, 1165, 1214
DpnII GATC 4 cut(s) 968, 973, 1163, 1212
DraI TTTAAA 1 cut(s) 483
EaeI YGGCCR 1 cut(s) 1059
Ecl136II GAGCTC 2 cut(s) 37, 952
Eco130I CCWWGG 3 cut(s) 240, 365, 628
Eco24I GRGCYC 2 cut(s) 39, 954
Eco32I GATATC 1 cut(s) 984
Eco47I GGWCC 2 cut(s) 553, 664
Eco53kI GAGCTC 2 cut(s) 37, 952
Eco57I CTGAAG 1 cut(s) 1169
Eco81I CCTNAGG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 1005
EcoICRI GAGCTC 2 cut(s) 37, 952
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 984
EcoT14I CCWWGG 3 cut(s) 240, 365, 628
EcoT22I ATGCAT 1 cut(s) 608
EcoT38I GRGCYC 2 cut(s) 39, 954
ErhI CCWWGG 3 cut(s) 240, 365, 628
Esp3I CGTCTC 1 cut(s) 905
FaeI CATG 9 cut(s) 251, 500, 564, 610, 619, 632, 980, 1099, 1183
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 663, 695
FaqI GGGAC 1 cut(s) 310
FatI CATG 9 cut(s) 247, 496, 560, 606, 615, 628, 976, 1095, 1179
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 2 cut(s) 777, 1056
FbaI TGATCA 1 cut(s) 973
Fnu4HI GCNGC 5 cut(s) 156, 865, 1071, 1080, 1136
FokI GGATG 3 cut(s) 455, 530, 857
FriOI GRGCYC 2 cut(s) 39, 954
Fsp4HI GCNGC 5 cut(s) 156, 865, 1071, 1080, 1136
FspBI CTAG 4 cut(s) 11, 366, 896, 1243
FspI TGCGCA 1 cut(s) 1184
GlaI GCGC 3 cut(s) 101, 1019, 1184
GluI GCNGC 5 cut(s) 156, 865, 1071, 1080, 1136
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 3 cut(s) 334, 1061, 1178
HapII CCGG 1 cut(s) 1006
HhaI GCGC 3 cut(s) 102, 1020, 1185
Hin1II CATG 9 cut(s) 251, 500, 564, 610, 619, 632, 980, 1099, 1183
Hin6I GCGC 3 cut(s) 100, 1018, 1183
HinP1I GCGC 3 cut(s) 100, 1018, 1183
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HinfI GANTC 3 cut(s) 343, 610, 633
HpaII CCGG 1 cut(s) 1006
HphI GGTGA 5 cut(s) 314, 407, 833, 920, 1038
Hpy166II GTNNAC 2 cut(s) 433, 805
Hpy188I TCNGA 4 cut(s) 76, 342, 973, 1217
Hpy188III TCNNGA 4 cut(s) 167, 267, 644, 1167
Hpy8I GTNNAC 2 cut(s) 433, 805
HpyAV CCTTC 2 cut(s) 655, 1144
HpyCH4III ACNGT 3 cut(s) 755, 923, 1111
HpyF3I CTNAG 4 cut(s) 165, 252, 438, 948
Hsp92II CATG 9 cut(s) 251, 500, 564, 610, 619, 632, 980, 1099, 1183
HspAI GCGC 3 cut(s) 100, 1018, 1183
Ksp22I TGATCA 1 cut(s) 973
Kzo9I GATC 4 cut(s) 968, 973, 1163, 1212
LmnI GCTCC 2 cut(s) 66, 364
Lsp1109I GCAGC 5 cut(s) 142, 876, 1057, 1066, 1147
LweI GCATC 2 cut(s) 265, 593
MaeI CTAG 4 cut(s) 11, 366, 896, 1243
MaeIII GTNAC 3 cut(s) 26, 124, 272
MalI GATC 4 cut(s) 970, 975, 1165, 1214
MboI GATC 4 cut(s) 968, 973, 1163, 1212
MflI RGATCY 1 cut(s) 968
MhlI GDGCHC 3 cut(s) 39, 214, 954
MlsI TGGCCA 1 cut(s) 1061
MluCI AATT 2 cut(s) 378, 1010
MluNI TGGCCA 1 cut(s) 1061
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 531, 822
Mox20I TGGCCA 1 cut(s) 1061
Mph1103I ATGCAT 1 cut(s) 608
MscI TGGCCA 1 cut(s) 1061
MseI TTAA 4 cut(s) 482, 696, 702, 750
Msp20I TGGCCA 1 cut(s) 1061
MspA1I CMGCKG 3 cut(s) 207, 1070, 1138
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 1 cut(s) 1006
MspR9I CCNGG 3 cut(s) 120, 1006, 1007
MvaI CCWGG 1 cut(s) 120
NciI CCSGG 2 cut(s) 1006, 1007
NcoI CCATGG 1 cut(s) 628
NdeI CATATG 2 cut(s) 777, 1056
NdeII GATC 4 cut(s) 968, 973, 1163, 1212
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 9 cut(s) 251, 500, 564, 610, 619, 632, 980, 1099, 1183
NlaIV GGNNCC 7 cut(s) 62, 83, 117, 555, 666, 740, 1003
NmuCI GTSAC 2 cut(s) 124, 272
NsbI TGCGCA 1 cut(s) 1184
NsiI ATGCAT 1 cut(s) 608
NspI RCATGY 2 cut(s) 500, 619
PaeI GCATGC 1 cut(s) 500
PfeI GAWTC 2 cut(s) 610, 633
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 5 cut(s) 157, 866, 1072, 1081, 1137
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 664
Psp124BI GAGCTC 2 cut(s) 39, 954
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 7 cut(s) 62, 83, 117, 555, 666, 740, 1003
PspPI GGNCC 2 cut(s) 553, 664
PspPPI RGGWCCY 1 cut(s) 664
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PstI CTGCAG 1 cut(s) 1075
PstNI CAGNNNCTG 1 cut(s) 1079
PsuI RGATCY 1 cut(s) 968
PvuII CAGCTG 3 cut(s) 207, 1070, 1138
RsaI GTAC 4 cut(s) 725, 804, 1088, 1146
RsaNI GTAC 4 cut(s) 724, 803, 1087, 1145
SacI GAGCTC 2 cut(s) 39, 954
SaqAI TTAA 4 cut(s) 482, 696, 702, 750
SatI GCNGC 5 cut(s) 156, 865, 1071, 1080, 1136
Sau3AI GATC 4 cut(s) 968, 973, 1163, 1212
Sau96I GGNCC 2 cut(s) 553, 664
ScaI AGTACT 1 cut(s) 1146
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 3 cut(s) 120, 1006, 1007
SduI GDGCHC 3 cut(s) 39, 214, 954
SfaNI GCATC 2 cut(s) 265, 593
SfcI CTRYAG 2 cut(s) 202, 1071
SinI GGWCC 2 cut(s) 553, 664
SmaI CCCGGG 1 cut(s) 1007
SmlI CTYRAG 4 cut(s) 38, 95, 291, 695
SmoI CTYRAG 4 cut(s) 38, 95, 291, 695
SpeI ACTAGT 1 cut(s) 895
SphI GCATGC 1 cut(s) 500
Sse9I AATT 2 cut(s) 378, 1010
SsiI CCGC 2 cut(s) 85, 283
SspMI CTAG 4 cut(s) 11, 366, 896, 1243
SstI GAGCTC 2 cut(s) 39, 954
StyD4I CCNGG 3 cut(s) 118, 1004, 1005
StyI CCWWGG 3 cut(s) 240, 365, 628
TaaI ACNGT 3 cut(s) 755, 923, 1111
TaqI TCGA 2 cut(s) 876, 927
TasI AATT 2 cut(s) 378, 1010
TatI WGTACW 2 cut(s) 723, 1144
TfiI GAWTC 2 cut(s) 610, 633
Tru1I TTAA 4 cut(s) 482, 696, 702, 750
Tru9I TTAA 4 cut(s) 482, 696, 702, 750
TscAI CASTG 3 cut(s) 800, 928, 1080
TseFI GTSAC 2 cut(s) 124, 272
TseI GCWGC 5 cut(s) 155, 864, 1070, 1079, 1135
Tsp45I GTSAC 2 cut(s) 124, 272
TspDTI ATGAA 6 cut(s) 201, 321, 534, 628, 840, 1214
TspMI CCCGGG 1 cut(s) 1005
TspRI CASTG 3 cut(s) 800, 928, 1080
Vha464I CTTAAG 1 cut(s) 695
VpaK11BI GGWCC 2 cut(s) 553, 664
XapI RAATTY 1 cut(s) 1010
XceI RCATGY 2 cut(s) 500, 619
XmaI CCCGGG 1 cut(s) 1005
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 4 cut(s) 11, 366, 896, 1243
ZrmI AGTACT 1 cut(s) 1146
Zsp2I ATGCAT 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.