Rmu_ssc0000278.1_g000006

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000278.1
Physical Location & Seq
Forward (+)
28657 .. 30755
2099 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000278.1_g000006.1.cds

Sequence Viewer

Length: 1236 bp
atgtcagggctagcttgcaacgcctgtaacaaagagctcaaggacgacaccgagcagaggctccattacaagtccgaatggcaccgctacaacctcaagcgcaaggtagctggggttcctggagtgacagaagcattgtttcttgcaagacaagctgcacttgctcaggagaaaaatggtgcaaatgaaaccccaatgctctacagctgtgctctttgtggcaaagggtatagaagttccaaggctcatgctgagcatctcaaatcacgaagtcacattatgcgggcttctcaagggactggtgatgaagaagaagacaaggcaatagtcaggccacttccgagtcgtgcgaataaagctccccctaggagagaggaaattgatgaggagagtgaagaaagtggagatgagtgggaggaggttgaccctgaggatgagttggttagtgagactgcaaaatctttgactgctttaaatgtagatgggcatgcttctaatgaggatatggacgaagatgatgatgacgatgactatgaggagttggacccatcatgttgttttatgtgcgataaagagcataagaccatagagagatgcatgattcacatgcacaaacaccatggattcttcattcctgatattgagtatttgaaggacccgaaaggtcttcttacttatcttggtctcaaggttaaaagggattttatgtgtctgtactgcaatgataggtgccaacccttcaacagtatggaagcagtgaggaagcatatggtggcaaaaagccactgcaaggtacactatggagatggtggtgacgaagaagaagcagagttggatgagttctatgattacagcagcagttatgtcgatgaggctggcaagcaactagttgtatcaggtgagacggccaacagtgtcgaacttgggagtggtggtgctgagctcatcattactacaagatctgatcatgggatatcaagcaaagcacttggttcccgggaatttatgcgctattatcgccagaaaccacgcccatcacctaaccatatggccataacagctgcagtggctgcaaggtacaagagcatggggttggcaactgtgcagtcaaaggaacgaatggtgcagctgaaggtactgaaggaaatgagaagatcaggagttgaggccatgcgcagtaagatgggaatgaaaagcaatgtgatccgaaacctccccaagaatgttccattctag

Protein Analysis

411

Amino Acids

46.38

Weight (kDa)

5.66

Isoelectric Point (pI)

54.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013264)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24500 AT4G31420 AT4G31420
fragaria_vesca FvH4_2g36910
malus_domestica MD08G1131000.v1.1 MD15G1108800.v1.1
prunus_persica Prupe.1G461000_v2.0.a1
pyrus_communis pycom15g09940
rosa_chinensis RchiOBHm_Chr6g0304871
rosa_laevigata RLG00000010943
rosa_multiflora Rmu_ssc0000278.1_g000006
rosa_roxburghii Rroxscaffold_7G00163390
rosa_rugosa Rorug06G0336000
rosa_samantha Rh6AG447100 Rh6BG454400 Rh6CG460600 Rh6DG447600
rosa_wichuraiana Rw6G038920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1175
AccB1I GGYRCC 2 cut(s) 81, 729
AciI CCGC 2 cut(s) 85, 283
AclWI GGATC 1 cut(s) 1198
AcoI YGGCCR 2 cut(s) 906, 1050
AcsI RAATTY 1 cut(s) 1001
AcuI CTGAAG 2 cut(s) 1151, 1160
AfaI GTAC 4 cut(s) 716, 795, 1079, 1137
AfiI CCNNNNNNNGG 2 cut(s) 57, 790
AgsI TTSAA 2 cut(s) 652, 742
AhlI ACTAGT 1 cut(s) 886
AjnI CCWGG 1 cut(s) 118
AluBI AGCT 9 cut(s) 14, 37, 110, 155, 207, 359, 943, 1061, 1129
AluI AGCT 9 cut(s) 14, 37, 110, 155, 207, 359, 943, 1061, 1129
Alw21I GWGCWC 3 cut(s) 39, 214, 945
Alw26I GTCTC 3 cut(s) 443, 689, 896
AlwI GGATC 1 cut(s) 1198
AlwNI CAGNNNCTG 1 cut(s) 1070
Ama87I CYCGRG 1 cut(s) 996
AoxI GGCC 4 cut(s) 332, 906, 1050, 1167
ApeKI GCWGC 5 cut(s) 155, 855, 1061, 1070, 1126
ApoI RAATTY 1 cut(s) 1001
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 3 cut(s) 102, 1011, 1176
AspS9I GGNCC 2 cut(s) 544, 655
AsuC2I CCSGG 2 cut(s) 997, 998
AsuHPI GGTGA 4 cut(s) 314, 824, 911, 1029
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 996
AvaII GGWCC 2 cut(s) 544, 655
AvrII CCTAGG 1 cut(s) 365
AxyI CCTNAGG 1 cut(s) 429
BalI TGGCCA 1 cut(s) 1052
BanI GGYRCC 2 cut(s) 81, 729
BanII GRGCYC 2 cut(s) 39, 945
BbsI GAAGAC 2 cut(s) 321, 659
Bbv12I GWGCWC 3 cut(s) 39, 214, 945
BbvI GCAGC 5 cut(s) 142, 867, 1048, 1057, 1138
BccI CCATC 5 cut(s) 476, 556, 800, 1042, 1177
BceAI ACGGC 1 cut(s) 921
BcgI CGANNNNNNTGC 2 cut(s) 847, 881
BciT130I CCWGG 1 cut(s) 120
BclI TGATCA 1 cut(s) 964
BcnI CCSGG 2 cut(s) 997, 998
BcoDI GTCTC 3 cut(s) 443, 689, 896
BcuI ACTAGT 1 cut(s) 886
BfaI CTAG 4 cut(s) 11, 366, 887, 1234
BfmI CTRYAG 2 cut(s) 202, 1062
BglII AGATCT 1 cut(s) 959
BisI GCNGC 5 cut(s) 156, 856, 1062, 1071, 1127
BlnI CCTAGG 1 cut(s) 365
BlpI GCTNAGC 2 cut(s) 252, 939
BlsI GCNGC 5 cut(s) 157, 857, 1063, 1072, 1128
Bme1390I CCNGG 3 cut(s) 120, 997, 998
Bme18I GGWCC 2 cut(s) 544, 655
BmeT110I CYCGRG 1 cut(s) 996
BmgT120I GGNCC 2 cut(s) 544, 655
BmiI GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 994
BmrFI CCNGG 3 cut(s) 120, 997, 998
BmsI GCATC 2 cut(s) 265, 584
BmtI GCTAGC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 321, 659
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 165
Bpu1102I GCTNAGC 2 cut(s) 252, 939
BpuEI CTTGAG 4 cut(s) 23, 80, 276, 671
BpuMI CCSGG 2 cut(s) 997, 998
BsaI GGTCTC 1 cut(s) 689
BsaJI CCNNGG 4 cut(s) 240, 365, 619, 996
BsaXI ACNNNNNCTCC 2 cut(s) 919, 949
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 790
Bse1I ACTGG 1 cut(s) 304
Bse21I CCTNAGG 1 cut(s) 429
Bse3DI GCAATG 2 cut(s) 727, 1204
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 240, 365, 619, 996
BseGI GGATG 2 cut(s) 439, 841
BseLI CCNNNNNNNGG 2 cut(s) 57, 790
BseMI GCAATG 2 cut(s) 727, 1204
BseMII CTCAG 4 cut(s) 179, 243, 420, 930
BseNI ACTGG 1 cut(s) 304
BseRI GAGGAG 3 cut(s) 401, 431, 551
BseXI GCAGC 5 cut(s) 142, 867, 1048, 1057, 1138
BseYI CCCAGC 1 cut(s) 110
BsgI GTGCAG 3 cut(s) 141, 1124, 1145
BshFI GGCC 4 cut(s) 334, 908, 1052, 1169
BshNI GGYRCC 2 cut(s) 81, 729
BsiHKAI GWGCWC 3 cut(s) 39, 214, 945
BsiHKCI CYCGRG 1 cut(s) 996
BsiSI CCGG 1 cut(s) 997
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 57, 790
BsmAI GTCTC 3 cut(s) 443, 689, 896
BsmBI CGTCTC 1 cut(s) 896
BsmFI GGGAC 1 cut(s) 310
BsnI GGCC 4 cut(s) 334, 908, 1052, 1169
Bso31I GGTCTC 1 cut(s) 689
BsoBI CYCGRG 1 cut(s) 996
Bsp1286I GDGCHC 3 cut(s) 39, 214, 945
Bsp143I GATC 4 cut(s) 959, 964, 1154, 1203
Bsp1720I GCTNAGC 2 cut(s) 252, 939
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 2 cut(s) 85, 283
BspANI GGCC 4 cut(s) 334, 908, 1052, 1169
BspCNI CTCAG 4 cut(s) 178, 244, 421, 931
BspLI GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 994
BspMAI CTGCAG 1 cut(s) 1066
BspOI GCTAGC 1 cut(s) 14
BspPI GGATC 1 cut(s) 1198
BspT107I GGYRCC 2 cut(s) 81, 729
BspTNI GGTCTC 1 cut(s) 689
BsrDI GCAATG 2 cut(s) 727, 1204
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 4 cut(s) 240, 365, 619, 996
BssMI GATC 4 cut(s) 959, 964, 1154, 1203
BssT1I CCWWGG 3 cut(s) 240, 365, 619
Bst2UI CCWGG 1 cut(s) 120
Bst4CI ACNGT 3 cut(s) 746, 914, 1102
BstAPI GCANNNNNTGC 1 cut(s) 1070
BstC8I GCNNGC 6 cut(s) 12, 16, 285, 489, 877, 881
BstDEI CTNAG 4 cut(s) 165, 252, 429, 939
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 2 cut(s) 439, 841
BstHHI GCGC 3 cut(s) 102, 1011, 1176
BstKTI GATC 4 cut(s) 962, 967, 1157, 1206
BstMAI GTCTC 3 cut(s) 443, 689, 896
BstMBI GATC 4 cut(s) 959, 964, 1154, 1203
BstMWI GCNNNNNNNGC 8 cut(s) 20, 152, 161, 356, 1017, 1058, 1067, 1070
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 2 cut(s) 491, 610
BstSCI CCNGG 3 cut(s) 118, 995, 996
BstSFI CTRYAG 2 cut(s) 202, 1062
BstV1I GCAGC 5 cut(s) 142, 867, 1048, 1057, 1138
BstV2I GAAGAC 2 cut(s) 321, 659
BstX2I RGATCY 1 cut(s) 959
BstYI RGATCY 1 cut(s) 959
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 4 cut(s) 334, 908, 1052, 1169
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 2 cut(s) 439, 841
BtsI GCAGTG 3 cut(s) 762, 784, 1071
BtsIMutI CAGTG 4 cut(s) 762, 784, 919, 1071
Cac8I GCNNGC 6 cut(s) 12, 16, 285, 489, 877, 881
CaiI CAGNNNCTG 1 cut(s) 1070
CfoI GCGC 3 cut(s) 102, 1011, 1176
Cfr13I GGNCC 2 cut(s) 544, 655
Cfr9I CCCGGG 1 cut(s) 996
Csp6I GTAC 4 cut(s) 715, 794, 1078, 1136
CviAII CATG 9 cut(s) 248, 488, 552, 598, 607, 620, 968, 1087, 1171
CviQI GTAC 4 cut(s) 715, 794, 1078, 1136
DdeI CTNAG 4 cut(s) 165, 252, 429, 939
DpnI GATC 4 cut(s) 961, 966, 1156, 1205
DpnII GATC 4 cut(s) 959, 964, 1154, 1203
DraI TTTAAA 1 cut(s) 474
EaeI YGGCCR 2 cut(s) 906, 1050
Ecl136II GAGCTC 2 cut(s) 37, 943
Eco130I CCWWGG 3 cut(s) 240, 365, 619
Eco24I GRGCYC 2 cut(s) 39, 945
Eco31I GGTCTC 1 cut(s) 689
Eco32I GATATC 1 cut(s) 975
Eco47I GGWCC 2 cut(s) 544, 655
Eco53kI GAGCTC 2 cut(s) 37, 943
Eco57I CTGAAG 2 cut(s) 1151, 1160
Eco81I CCTNAGG 1 cut(s) 429
Eco88I CYCGRG 1 cut(s) 996
EcoICRI GAGCTC 2 cut(s) 37, 943
EcoO109I RGGNCCY 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 118
EcoRV GATATC 1 cut(s) 975
EcoT14I CCWWGG 3 cut(s) 240, 365, 619
EcoT22I ATGCAT 1 cut(s) 599
EcoT38I GRGCYC 2 cut(s) 39, 945
ErhI CCWWGG 3 cut(s) 240, 365, 619
Esp3I CGTCTC 1 cut(s) 896
FaeI CATG 9 cut(s) 251, 491, 555, 601, 610, 623, 971, 1090, 1174
FalI AAGNNNNNCTT 4 cut(s) 144, 176, 654, 686
FaqI GGGAC 1 cut(s) 310
FatI CATG 9 cut(s) 247, 487, 551, 597, 606, 619, 967, 1086, 1170
FauI CCCGC 1 cut(s) 276
FauNDI CATATG 2 cut(s) 768, 1047
FbaI TGATCA 1 cut(s) 964
Fnu4HI GCNGC 5 cut(s) 156, 856, 1062, 1071, 1127
FokI GGATG 2 cut(s) 446, 848
FriOI GRGCYC 2 cut(s) 39, 945
Fsp4HI GCNGC 5 cut(s) 156, 856, 1062, 1071, 1127
FspBI CTAG 4 cut(s) 11, 366, 887, 1234
FspI TGCGCA 1 cut(s) 1175
GlaI GCGC 3 cut(s) 101, 1010, 1175
GluI GCNGC 5 cut(s) 156, 856, 1062, 1071, 1127
GsaI CCCAGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 4 cut(s) 334, 908, 1052, 1169
HapII CCGG 1 cut(s) 997
HhaI GCGC 3 cut(s) 102, 1011, 1176
Hin1II CATG 9 cut(s) 251, 491, 555, 601, 610, 623, 971, 1090, 1174
Hin6I GCGC 3 cut(s) 100, 1009, 1174
HinP1I GCGC 3 cut(s) 100, 1009, 1174
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HinfI GANTC 3 cut(s) 343, 601, 624
HpaII CCGG 1 cut(s) 997
HphI GGTGA 4 cut(s) 314, 824, 911, 1029
Hpy166II GTNNAC 2 cut(s) 424, 796
Hpy188I TCNGA 4 cut(s) 76, 342, 964, 1208
Hpy188III TCNNGA 4 cut(s) 167, 267, 635, 1158
Hpy8I GTNNAC 2 cut(s) 424, 796
HpyAV CCTTC 4 cut(s) 646, 748, 1126, 1135
HpyCH4III ACNGT 3 cut(s) 746, 914, 1102
HpyF10VI GCNNNNNNNGC 8 cut(s) 20, 152, 161, 356, 1017, 1058, 1067, 1070
HpyF3I CTNAG 4 cut(s) 165, 252, 429, 939
Hsp92II CATG 9 cut(s) 251, 491, 555, 601, 610, 623, 971, 1090, 1174
HspAI GCGC 3 cut(s) 100, 1009, 1174
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 4 cut(s) 959, 964, 1154, 1203
LmnI GCTCC 2 cut(s) 66, 364
Lsp1109I GCAGC 5 cut(s) 142, 867, 1048, 1057, 1138
LweI GCATC 2 cut(s) 265, 584
MaeI CTAG 4 cut(s) 11, 366, 887, 1234
MaeIII GTNAC 4 cut(s) 26, 124, 272, 812
MalI GATC 4 cut(s) 961, 966, 1156, 1205
MboI GATC 4 cut(s) 959, 964, 1154, 1203
MflI RGATCY 1 cut(s) 959
MhlI GDGCHC 3 cut(s) 39, 214, 945
MlsI TGGCCA 1 cut(s) 1052
MluCI AATT 2 cut(s) 378, 1001
MluNI TGGCCA 1 cut(s) 1052
MlyI GAGTC 1 cut(s) 352
MmeI TCCRAC 2 cut(s) 522, 813
Mox20I TGGCCA 1 cut(s) 1052
Mph1103I ATGCAT 1 cut(s) 599
MscI TGGCCA 1 cut(s) 1052
MseI TTAA 2 cut(s) 473, 693
Msp20I TGGCCA 1 cut(s) 1052
MspA1I CMGCKG 3 cut(s) 207, 1061, 1129
MspI CCGG 1 cut(s) 997
MspR9I CCNGG 3 cut(s) 120, 997, 998
MvaI CCWGG 1 cut(s) 120
MwoI GCNNNNNNNGC 8 cut(s) 20, 152, 161, 356, 1017, 1058, 1067, 1070
NciI CCSGG 2 cut(s) 997, 998
NcoI CCATGG 1 cut(s) 619
NdeI CATATG 2 cut(s) 768, 1047
NdeII GATC 4 cut(s) 959, 964, 1154, 1203
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 9 cut(s) 251, 491, 555, 601, 610, 623, 971, 1090, 1174
NlaIV GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 994
NmuCI GTSAC 3 cut(s) 124, 272, 812
NsbI TGCGCA 1 cut(s) 1175
NsiI ATGCAT 1 cut(s) 599
NspI RCATGY 2 cut(s) 491, 610
PaeI GCATGC 1 cut(s) 491
PfeI GAWTC 2 cut(s) 601, 624
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 5 cut(s) 157, 857, 1063, 1072, 1128
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PpuMI RGGWCCY 1 cut(s) 655
Psp124BI GAGCTC 2 cut(s) 39, 945
Psp5II RGGWCCY 1 cut(s) 655
Psp6I CCWGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 110
PspGI CCWGG 1 cut(s) 118
PspN4I GGNNCC 7 cut(s) 62, 83, 117, 546, 657, 731, 994
PspPI GGNCC 2 cut(s) 544, 655
PspPPI RGGWCCY 1 cut(s) 655
PsrI GAACNNNNNNTAC 2 cut(s) 99, 131
PstI CTGCAG 1 cut(s) 1066
PstNI CAGNNNCTG 1 cut(s) 1070
PsuI RGATCY 1 cut(s) 959
PvuII CAGCTG 3 cut(s) 207, 1061, 1129
RsaI GTAC 4 cut(s) 716, 795, 1079, 1137
RsaNI GTAC 4 cut(s) 715, 794, 1078, 1136
SacI GAGCTC 2 cut(s) 39, 945
SaqAI TTAA 2 cut(s) 473, 693
SatI GCNGC 5 cut(s) 156, 856, 1062, 1071, 1127
Sau3AI GATC 4 cut(s) 959, 964, 1154, 1203
Sau96I GGNCC 2 cut(s) 544, 655
SchI GAGTC 1 cut(s) 352
ScrFI CCNGG 3 cut(s) 120, 997, 998
SduI GDGCHC 3 cut(s) 39, 214, 945
SfaNI GCATC 2 cut(s) 265, 584
SfcI CTRYAG 2 cut(s) 202, 1062
SinI GGWCC 2 cut(s) 544, 655
SmaI CCCGGG 1 cut(s) 998
SmlI CTYRAG 4 cut(s) 38, 95, 291, 686
SmoI CTYRAG 4 cut(s) 38, 95, 291, 686
SpeI ACTAGT 1 cut(s) 886
SphI GCATGC 1 cut(s) 491
Sse9I AATT 2 cut(s) 378, 1001
SsiI CCGC 2 cut(s) 85, 283
SspMI CTAG 4 cut(s) 11, 366, 887, 1234
SstI GAGCTC 2 cut(s) 39, 945
StyD4I CCNGG 3 cut(s) 118, 995, 996
StyI CCWWGG 3 cut(s) 240, 365, 619
TaaI ACNGT 3 cut(s) 746, 914, 1102
TaqI TCGA 2 cut(s) 867, 918
TasI AATT 2 cut(s) 378, 1001
TatI WGTACW 1 cut(s) 714
TfiI GAWTC 2 cut(s) 601, 624
Tru1I TTAA 2 cut(s) 473, 693
Tru9I TTAA 2 cut(s) 473, 693
TscAI CASTG 4 cut(s) 762, 791, 919, 1071
TseFI GTSAC 3 cut(s) 124, 272, 812
TseI GCWGC 5 cut(s) 155, 855, 1061, 1070, 1126
Tsp45I GTSAC 3 cut(s) 124, 272, 812
TspDTI ATGAA 4 cut(s) 201, 321, 619, 1205
TspMI CCCGGG 1 cut(s) 996
TspRI CASTG 4 cut(s) 762, 791, 919, 1071
VpaK11BI GGWCC 2 cut(s) 544, 655
XapI RAATTY 1 cut(s) 1001
XceI RCATGY 2 cut(s) 491, 610
XmaI CCCGGG 1 cut(s) 996
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 4 cut(s) 11, 366, 887, 1234
Zsp2I ATGCAT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.