AT2G24530

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010904
Physical Location & Seq
Forward (+)
10421841 .. 10424402
2562 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24530.2

Sequence Viewer

Length: 1224 bp
ATGCAACGTTCTCAAGATCAGAGGATTAGCTTGTGTGAATTGAAAGAGCATATTGTGAAGAAGACCGGTGTCGAAAGATCGAGAAGGTATTTCTATTATCTAGGCAGGTTTCTAAGTCAGAAGCTTACTAAGAGTGAGTTTGATAAGACGTGTTTGAGGTTGTTAGGGAGGGAGAATCTCTCTTTACATAACCAGTTGATACGTTCGATCTTGAGGAATGCGACTGTTGCTAAGTCACCACCTCCAGATCATGAAGCTGGTCATTCGACTAAGGCGAATGCTTTTCAGAGTAGAGGAGACGGTCTTGAGCAAAGTGGAACTTTAATCCCTAATCATAGTCAGCATGAGCCTGTTTGGTCTAACGGGGTTTTGCCTATCTCTCCGCGGAAAGTTAGGTCTGGAATGCAGAACAGGAAGAGCAGAGATAGGCCTAGTCCACTAGGGTCAAATGGGAAGGTTGAACATATGTTGCATCAGCCAGTTTGTAGAGAAGACAATAGAGGTAGTGTTGGTATGGAAAATGGGGATTATCAAAGATCAGGCAGATATGTTGCTGATGAAAAAGATGGTGAGTTTCTTCGTCCCGTGGAAAAACCGAGAATACCAAATAAGGAAAAGATTGCAGCTGTGTCTATGAGAGATGATCAGAATCAAGAAGAGCAGGCTAGAGTAAATCTATCAATGAGTCCTCTTATTGCACCTCTAGGGATTCCATTTTGTTCAGCTAGTGTCGGTGGGTCCCCTAGAACGATACCTGTTTCAACCAACGCTGAGTTAATTAGTTGCTATGACAGTGGTGGATTACCTGATATAGAGATGCTGAGGAAAAGAATGGAGAATATTGCTGTAGCACAGGGTCTTGAAGGTGTTTCGATGGAGTGTGCTAAGACGTTGAATAACATGTTGGATGTATATCTGAAGAAGCTGATCAATTCTTGCTTTGATTTGGTTGGAGCCCGGTCCACAAATGGAGATCCTGGGAAACAACGTATAGGCAAGCAGCAGAGTCAAAACAAGATTGTAAATGGGGTGTGGCCAACTAACAGTTTGAAAATACAAACTCCTAATGGGTCTTCTGATATAAGACAAGATCATCATTCTGTGTCTATGCTTGATTTTAGAACTGCCATGGAGTTAAATCCACGCCAGCTTGGCGAAGACTGGCCAACTCTCCGAGAGAGAATTTCATTGCGGTCTTTCGAGGAACAAGACTTTGAGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

407

Amino Acids

45.76

Weight (kDa)

9.16

Isoelectric Point (pI)

51.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 5 - 317 2.6e-65 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AccII CGCG 1 cut(s) 385
AciI CCGC 3 cut(s) 383, 385, 1192
AclI AACGTT 1 cut(s) 7
AclWI GGATC 1 cut(s) 968
AcoI YGGCCR 2 cut(s) 1034, 1163
AcsI RAATTY 1 cut(s) 1182
AcuI CTGAAG 1 cut(s) 938
AflIII ACRYGT 2 cut(s) 149, 900
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 6 cut(s) 43, 461, 762, 863, 895, 1051
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 976
AjuI GAANNNNNNNTTGG 2 cut(s) 887, 919
AluBI AGCT 7 cut(s) 30, 124, 257, 626, 725, 925, 1150
AluI AGCT 7 cut(s) 30, 124, 257, 626, 725, 925, 1150
Alw26I GTCTC 1 cut(s) 291
AlwI GGATC 1 cut(s) 968
AoxI GGCC 3 cut(s) 428, 1034, 1163
ApeKI GCWGC 2 cut(s) 623, 1000
ApoI RAATTY 1 cut(s) 1182
AsiGI ACCGGT 1 cut(s) 65
AspS9I GGNCC 2 cut(s) 738, 960
AsuC2I CCSGG 1 cut(s) 958
AsuHPI GGTGA 2 cut(s) 228, 581
AvaII GGWCC 2 cut(s) 738, 960
BalI TGGCCA 2 cut(s) 1036, 1165
BanII GRGCYC 1 cut(s) 958
BbsI GAAGAC 4 cut(s) 68, 498, 1065, 1164
BbvCI CCTCAGC 1 cut(s) 821
BbvI GCAGC 2 cut(s) 635, 1012
BccI CCATC 2 cut(s) 560, 868
BciT130I CCWGG 1 cut(s) 978
BclI TGATCA 2 cut(s) 643, 927
BcnI CCSGG 1 cut(s) 958
BcoDI GTCTC 1 cut(s) 291
BfaI CTAG 7 cut(s) 101, 432, 440, 666, 704, 726, 744
BfmI CTRYAG 1 cut(s) 846
BfuAI ACCTGC 1 cut(s) 96
BglI GCCNNNNNGGC 1 cut(s) 1152
BisI GCNGC 2 cut(s) 624, 1001
BlsI GCNGC 2 cut(s) 625, 1002
Bme1390I CCNGG 2 cut(s) 958, 978
Bme18I GGWCC 2 cut(s) 738, 960
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 738, 960
BmiI GGNNCC 3 cut(s) 739, 740, 955
BmrFI CCNGG 2 cut(s) 958, 978
BmsI GCATC 2 cut(s) 481, 807
BoxI GACNNNNGTC 1 cut(s) 68
BpiI GAAGAC 4 cut(s) 68, 498, 1065, 1164
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpmI CTGGAG 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 821
BpuEI CTTGAG 2 cut(s) 232, 326
BpuMI CCSGG 1 cut(s) 958
BsaBI GATNNNNATC 2 cut(s) 648, 912
BsaJI CCNNGG 4 cut(s) 383, 585, 977, 1128
BsaWI WCCGGW 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 3 cut(s) 193, 479, 1166
Bse3DI GCAATG 1 cut(s) 1187
Bse8I GATNNNNATC 2 cut(s) 648, 912
BseBI CCWGG 1 cut(s) 978
BseDI CCNNGG 4 cut(s) 383, 585, 977, 1128
BseGI GGATG 1 cut(s) 913
BseJI GATNNNNATC 2 cut(s) 648, 912
BseMI GCAATG 1 cut(s) 1187
BseMII CTCAG 2 cut(s) 762, 812
BseNI ACTGG 3 cut(s) 193, 479, 1166
BseRI GAGGAG 1 cut(s) 309
BseXI GCAGC 2 cut(s) 635, 1012
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 3 cut(s) 430, 1036, 1165
BshTI ACCGGT 1 cut(s) 65
BsiSI CCGG 2 cut(s) 66, 958
BslFI GGGAC 2 cut(s) 567, 724
BsmAI GTCTC 1 cut(s) 291
BsmBI CGTCTC 1 cut(s) 291
BsmFI GGGAC 2 cut(s) 567, 724
BsmI GAATGC 3 cut(s) 223, 283, 408
BsnI GGCC 3 cut(s) 430, 1036, 1165
Bsp1286I GDGCHC 1 cut(s) 958
Bsp143I GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
Bsp19I CCATGG 1 cut(s) 1128
BspACI CCGC 3 cut(s) 383, 385, 1192
BspANI GGCC 3 cut(s) 430, 1036, 1165
BspCNI CTCAG 2 cut(s) 763, 813
BspFNI CGCG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 739, 740, 955
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 968
BspQI GCTCTTC 2 cut(s) 410, 651
BsrDI GCAATG 1 cut(s) 1187
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 3 cut(s) 193, 479, 1166
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 383, 585, 977, 1128
BssMI GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
BssT1I CCWWGG 1 cut(s) 1128
Bst2UI CCWGG 1 cut(s) 978
Bst4CI ACNGT 4 cut(s) 226, 302, 794, 1046
Bst6I CTCTTC 2 cut(s) 410, 651
BstC8I GCNNGC 3 cut(s) 663, 998, 1148
BstDEI CTNAG 7 cut(s) 113, 129, 231, 270, 771, 821, 885
BstDSI CCRYGG 3 cut(s) 383, 585, 1128
BstF5I GGATG 1 cut(s) 913
BstFNI CGCG 1 cut(s) 385
BstKTI GATC 9 cut(s) 19, 80, 210, 250, 539, 646, 930, 976, 1093
BstMAI GTCTC 1 cut(s) 291
BstMBI GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 227, 1152
BstNI CCWGG 1 cut(s) 978
BstNSI RCATGY 1 cut(s) 904
BstPAI GACNNNNGTC 1 cut(s) 68
BstSCI CCNGG 2 cut(s) 956, 976
BstSFI CTRYAG 1 cut(s) 846
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 2 cut(s) 635, 1012
BstV2I GAAGAC 4 cut(s) 68, 498, 1065, 1164
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuRI GGCC 3 cut(s) 430, 1036, 1165
BtgI CCRYGG 3 cut(s) 383, 585, 1128
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 913
BtsIMutI CAGTG 1 cut(s) 799
BveI ACCTGC 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 663, 998, 1148
CciI TCATGA 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 738, 960
Cfr42I CCGCGG 1 cut(s) 386
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 4 cut(s) 251, 344, 901, 1129
DdeI CTNAG 7 cut(s) 113, 129, 231, 270, 771, 821, 885
DpnI GATC 9 cut(s) 18, 79, 209, 249, 538, 645, 929, 975, 1092
DpnII GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
EaeI YGGCCR 2 cut(s) 1034, 1163
Eam1104I CTCTTC 2 cut(s) 410, 651
EarI CTCTTC 2 cut(s) 410, 651
Eco130I CCWWGG 1 cut(s) 1128
Eco147I AGGCCT 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 958
Eco47I GGWCC 2 cut(s) 738, 960
Eco57I CTGAAG 1 cut(s) 938
EcoO109I RGGNCCY 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 1128
EcoT38I GRGCYC 1 cut(s) 958
ErhI CCWWGG 1 cut(s) 1128
Esp3I CGTCTC 1 cut(s) 291
FaeI CATG 4 cut(s) 254, 347, 904, 1132
FalI AAGNNNNNCTT 2 cut(s) 304, 336
FaqI GGGAC 2 cut(s) 567, 724
FatI CATG 4 cut(s) 250, 343, 900, 1128
FauNDI CATATG 1 cut(s) 465
FbaI TGATCA 2 cut(s) 643, 927
Fnu4HI GCNGC 2 cut(s) 624, 1001
FokI GGATG 1 cut(s) 920
FriOI GRGCYC 1 cut(s) 958
Fsp4HI GCNGC 2 cut(s) 624, 1001
FspBI CTAG 7 cut(s) 101, 432, 440, 666, 704, 726, 744
GluI GCNGC 2 cut(s) 624, 1001
GsuI CTGGAG 1 cut(s) 228
HaeIII GGCC 3 cut(s) 430, 1036, 1165
HapII CCGG 2 cut(s) 66, 958
Hin1II CATG 4 cut(s) 254, 347, 904, 1132
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 5 cut(s) 175, 649, 685, 709, 1006
HpaII CCGG 2 cut(s) 66, 958
HphI GGTGA 2 cut(s) 228, 581
Hpy166II GTNNAC 2 cut(s) 437, 963
Hpy188I TCNGA 7 cut(s) 21, 120, 288, 648, 918, 1078, 1175
Hpy188III TCNNGA 9 cut(s) 14, 81, 211, 245, 251, 305, 399, 653, 860
Hpy8I GTNNAC 2 cut(s) 437, 963
HpyAV CCTTC 3 cut(s) 78, 448, 857
HpyCH4III ACNGT 4 cut(s) 226, 302, 794, 1046
HpyCH4IV ACGT 5 cut(s) 7, 149, 202, 890, 988
HpyCH4V TGCA 5 cut(s) 4, 406, 472, 623, 698
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 1152
HpyF3I CTNAG 7 cut(s) 113, 129, 231, 270, 771, 821, 885
HpySE526I ACGT 5 cut(s) 7, 149, 202, 890, 988
Hsp92II CATG 4 cut(s) 254, 347, 904, 1132
KflI GGGWCCC 1 cut(s) 738
Ksp22I TGATCA 2 cut(s) 643, 927
KspI CCGCGG 1 cut(s) 386
Kzo9I GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
LguI GCTCTTC 2 cut(s) 410, 651
LmnI GCTCC 1 cut(s) 953
Lsp1109I GCAGC 2 cut(s) 635, 1012
LweI GCATC 2 cut(s) 481, 807
MaeI CTAG 7 cut(s) 101, 432, 440, 666, 704, 726, 744
MaeII ACGT 5 cut(s) 7, 149, 202, 890, 988
MaeIII GTNAC 1 cut(s) 234
MalI GATC 9 cut(s) 18, 79, 209, 249, 538, 645, 929, 975, 1092
MboI GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
MboII GAAGA 9 cut(s) 70, 73, 427, 503, 569, 668, 931, 1065, 1169
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 1 cut(s) 958
MlsI TGGCCA 2 cut(s) 1036, 1165
MluCI AATT 4 cut(s) 38, 777, 931, 1182
MluNI TGGCCA 2 cut(s) 1036, 1165
MlyI GAGTC 2 cut(s) 694, 1015
MmeI TCCRAC 2 cut(s) 885, 931
Mox20I TGGCCA 2 cut(s) 1036, 1165
MscI TGGCCA 2 cut(s) 1036, 1165
MseI TTAA 3 cut(s) 323, 776, 1136
Msp20I TGGCCA 2 cut(s) 1036, 1165
MspA1I CMGCKG 2 cut(s) 385, 626
MspI CCGG 2 cut(s) 66, 958
MspR9I CCNGG 2 cut(s) 958, 978
Mva1269I GAATGC 3 cut(s) 223, 283, 408
MvaI CCWGG 1 cut(s) 978
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 227, 1152
NciI CCSGG 1 cut(s) 958
NcoI CCATGG 1 cut(s) 1128
NdeI CATATG 1 cut(s) 465
NdeII GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
NlaIII CATG 4 cut(s) 254, 347, 904, 1132
NlaIV GGNNCC 3 cut(s) 739, 740, 955
NmuCI GTSAC 1 cut(s) 234
NspI RCATGY 1 cut(s) 904
PagI TCATGA 1 cut(s) 250
PceI AGGCCT 1 cut(s) 430
PciI ACATGT 1 cut(s) 900
PciSI GCTCTTC 2 cut(s) 410, 651
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PctI GAATGC 3 cut(s) 223, 283, 408
PfeI GAWTC 3 cut(s) 175, 649, 709
PinAI ACCGGT 1 cut(s) 65
PkrI GCNGC 2 cut(s) 625, 1002
PleI GAGTC 2 cut(s) 693, 1014
PpsI GAGTC 2 cut(s) 693, 1014
PpuMI RGGWCCY 1 cut(s) 738
PscI ACATGT 1 cut(s) 900
PshAI GACNNNNGTC 1 cut(s) 68
Psp1406I AACGTT 1 cut(s) 7
Psp5II RGGWCCY 1 cut(s) 738
Psp6I CCWGG 1 cut(s) 976
PspGI CCWGG 1 cut(s) 976
PspN4I GGNNCC 3 cut(s) 739, 740, 955
PspPI GGNCC 2 cut(s) 738, 960
PspPPI RGGWCCY 1 cut(s) 738
PsuI RGATCY 1 cut(s) 973
PvuII CAGCTG 1 cut(s) 626
SacII CCGCGG 1 cut(s) 386
SapI GCTCTTC 2 cut(s) 410, 651
SaqAI TTAA 3 cut(s) 323, 776, 1136
SatI GCNGC 2 cut(s) 624, 1001
Sau3AI GATC 9 cut(s) 16, 77, 207, 247, 536, 643, 927, 973, 1090
Sau96I GGNCC 2 cut(s) 738, 960
SchI GAGTC 2 cut(s) 694, 1015
ScrFI CCNGG 2 cut(s) 958, 978
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 2 cut(s) 481, 807
SfcI CTRYAG 1 cut(s) 846
Sfr303I CCGCGG 1 cut(s) 386
SgrBI CCGCGG 1 cut(s) 386
SinI GGWCC 2 cut(s) 738, 960
SmlI CTYRAG 3 cut(s) 12, 211, 305
SmoI CTYRAG 3 cut(s) 12, 211, 305
Sse9I AATT 4 cut(s) 38, 777, 931, 1182
SseBI AGGCCT 1 cut(s) 430
SsiI CCGC 3 cut(s) 383, 385, 1192
SspI AATATT 1 cut(s) 841
SspMI CTAG 7 cut(s) 101, 432, 440, 666, 704, 726, 744
StuI AGGCCT 1 cut(s) 430
StyD4I CCNGG 2 cut(s) 956, 976
StyI CCWWGG 1 cut(s) 1128
TaaI ACNGT 4 cut(s) 226, 302, 794, 1046
TaiI ACGT 5 cut(s) 10, 152, 205, 893, 991
TaqI TCGA 6 cut(s) 72, 80, 206, 266, 872, 1200
TasI AATT 4 cut(s) 38, 777, 931, 1182
TfiI GAWTC 3 cut(s) 175, 649, 709
Tru1I TTAA 3 cut(s) 323, 776, 1136
Tru9I TTAA 3 cut(s) 323, 776, 1136
TscAI CASTG 1 cut(s) 799
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 2 cut(s) 623, 1000
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 3 cut(s) 267, 573, 1176
TspRI CASTG 1 cut(s) 799
VpaK11BI GGWCC 2 cut(s) 738, 960
XapI RAATTY 1 cut(s) 1182
XceI RCATGY 1 cut(s) 904
XspI CTAG 7 cut(s) 101, 432, 440, 666, 704, 726, 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.