Rmu_co8368149.1_g000001

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8368149.1
OG0010904
Physical Location & Seq
Forward (+)
627 .. 1110
484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8368149.1_g000001.1.cds

Sequence Viewer

Length: 484 bp
atgcaacctcagcagttgtcgaggattgatttgggtgatttgagagctcagttagtgaagaggatcgggcctgagaagtcgaaacgatacttttattacttgaacaagttgttgagtcagaagctgagcaagaaagagtttgataagctgtgccaccgcgtgttaggaagtgagaacttgccgctgcacaatcattttatactgtcaatcttgaagaatgcatgccaaggcaagatcccgccaccagttcattcatcaggtcctgcaaaacctggggtgcaagctgcaaacagttctccgagtagagaagatgggcacgaacaaagtgggaaccttttcccaaatcagaatcaaaatgtctctgtttggtctaatggggttttgcctgtgtccccaaggaaggggaggtcggctatacgtgagcggaagctaagggataggcctagcccacttggaccaaatgggaaggtagatagtgtgtcac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

161

Amino Acids

17.91

Weight (kDa)

10.25

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 424
AccII CGCG 1 cut(s) 159
AciI CCGC 4 cut(s) 157, 182, 239, 424
AclWI GGATC 2 cut(s) 71, 229
AdeI CACNNNGTG 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 400, 401
AgsI TTSAA 2 cut(s) 103, 214
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 5 cut(s) 47, 124, 148, 284, 430
AluI AGCT 5 cut(s) 47, 124, 148, 284, 430
Alw21I GWGCWC 1 cut(s) 49
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 2 cut(s) 71, 229
AlwNI CAGNNNCTG 2 cut(s) 124, 263
AoxI GGCC 2 cut(s) 68, 440
ApeKI GCWGC 2 cut(s) 184, 284
Asp700I GAANNNNTTC 1 cut(s) 335
AspS9I GGNCC 3 cut(s) 68, 260, 455
AsuHPI GGTGA 1 cut(s) 47
AvaII GGWCC 2 cut(s) 260, 455
BaeGI GKGCMC 1 cut(s) 318
BanII GRGCYC 1 cut(s) 49
Bbv12I GWGCWC 1 cut(s) 49
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 171, 271
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 364
BfaI CTAG 1 cut(s) 444
BisI GCNGC 3 cut(s) 182, 185, 285
BlpI GCTNAGC 1 cut(s) 125
BlsI GCNGC 3 cut(s) 183, 186, 286
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 2 cut(s) 260, 455
BmgT120I GGNCC 3 cut(s) 68, 260, 455
BmiI GGNNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 273
Bpu10I CCTNAGC 2 cut(s) 9, 431
Bpu1102I GCTNAGC 1 cut(s) 125
BsaAI YACGTR 1 cut(s) 419
BsaJI CCNNGG 3 cut(s) 226, 272, 395
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 401
Bse1I ACTGG 1 cut(s) 245
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 3 cut(s) 226, 272, 395
BseLI CCNNNNNNNGG 2 cut(s) 400, 401
BseMII CTCAG 4 cut(s) 23, 62, 63, 116
BseNI ACTGG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 318
BseXI GCAGC 2 cut(s) 171, 271
BsgI GTGCAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 70, 442
BsiHKAI GWGCWC 1 cut(s) 49
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 400, 401
BsmAI GTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 2 cut(s) 70, 442
Bsp1286I GDGCHC 2 cut(s) 49, 318
Bsp143I GATC 2 cut(s) 63, 234
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 4 cut(s) 157, 182, 239, 424
BspANI GGCC 2 cut(s) 70, 442
BspCNI CTCAG 4 cut(s) 22, 61, 64, 117
BspFNI CGCG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 332
BspPI GGATC 2 cut(s) 71, 229
BsrBI CCGCTC 1 cut(s) 424
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 3 cut(s) 226, 272, 395
BssMI GATC 2 cut(s) 63, 234
BssT1I CCWWGG 2 cut(s) 226, 395
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 2 cut(s) 204, 293
Bst6I CTCTTC 1 cut(s) 53
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 223, 282
BstDEI CTNAG 5 cut(s) 9, 48, 72, 125, 431
BstFNI CGCG 1 cut(s) 159
BstKTI GATC 2 cut(s) 66, 237
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 2 cut(s) 63, 234
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 273
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 271
BstSLI GKGCMC 1 cut(s) 318
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 171, 271
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 2 cut(s) 70, 442
Cac8I GCNNGC 2 cut(s) 223, 282
CaiI CAGNNNCTG 2 cut(s) 124, 263
Cfr13I GGNCC 3 cut(s) 68, 260, 455
CviAII CATG 1 cut(s) 222
CviJI RGCY 9 cut(s) 47, 70, 124, 148, 284, 413, 430, 442, 447
CviKI_1 RGCY 9 cut(s) 47, 70, 124, 148, 284, 413, 430, 442, 447
DdeI CTNAG 5 cut(s) 9, 48, 72, 125, 431
DpnI GATC 2 cut(s) 65, 236
DpnII GATC 2 cut(s) 63, 234
DraIII CACNNNGTG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 47
Eco130I CCWWGG 2 cut(s) 226, 395
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 260, 455
Eco53kI GAGCTC 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 47
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 226, 395
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 2 cut(s) 226, 395
FaeI CATG 1 cut(s) 225
FaiI YATR 3 cut(s) 200, 223, 416
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 221
FauI CCCGC 1 cut(s) 246
Fnu4HI GCNGC 3 cut(s) 182, 185, 285
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 3 cut(s) 182, 185, 285
FspBI CTAG 1 cut(s) 444
GluI GCNGC 3 cut(s) 182, 185, 285
HaeIII GGCC 2 cut(s) 70, 442
Hin1II CATG 1 cut(s) 225
HinfI GANTC 2 cut(s) 115, 349
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 3 cut(s) 120, 300, 348
Hpy188III TCNNGA 1 cut(s) 211
HpyAV CCTTC 2 cut(s) 394, 460
HpyCH4III ACNGT 2 cut(s) 204, 293
HpyCH4IV ACGT 1 cut(s) 418
HpyCH4V TGCA 6 cut(s) 4, 187, 221, 266, 280, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 5 cut(s) 9, 48, 72, 125, 431
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 1 cut(s) 225
Kzo9I GATC 2 cut(s) 63, 234
LpnPI CCDG 7 cut(s) 84, 243, 258, 258, 276, 285, 399
Lsp1109I GCAGC 2 cut(s) 171, 271
MaeI CTAG 1 cut(s) 444
MaeII ACGT 1 cut(s) 418
MalI GATC 2 cut(s) 65, 236
MbiI CCGCTC 1 cut(s) 424
MboI GATC 2 cut(s) 63, 234
MboII GAAGA 3 cut(s) 70, 226, 320
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 2 cut(s) 49, 318
MlyI GAGTC 1 cut(s) 124
MnlI CCTC 4 cut(s) 15, 18, 54, 399
Mph1103I ATGCAT 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 335
MspA1I CMGCKG 1 cut(s) 184
MspR9I CCNGG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 10
NdeII GATC 2 cut(s) 63, 234
NlaIII CATG 1 cut(s) 225
NlaIV GGNNCC 1 cut(s) 332
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 225
PaeI GCATGC 1 cut(s) 225
PceI AGGCCT 1 cut(s) 442
PctI GAATGC 1 cut(s) 223
PdmI GAANNNNTTC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 3 cut(s) 183, 186, 286
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 260
Psp124BI GAGCTC 1 cut(s) 49
Psp5II RGGWCCY 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 332
PspPI GGNCC 3 cut(s) 68, 260, 455
PspPPI RGGWCCY 1 cut(s) 260
PstNI CAGNNNCTG 2 cut(s) 124, 263
PsuI RGATCY 1 cut(s) 234
SacI GAGCTC 1 cut(s) 49
SatI GCNGC 3 cut(s) 182, 185, 285
Sau3AI GATC 2 cut(s) 63, 234
Sau96I GGNCC 3 cut(s) 68, 260, 455
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 2 cut(s) 49, 318
SinI GGWCC 2 cut(s) 260, 455
SphI GCATGC 1 cut(s) 225
SseBI AGGCCT 1 cut(s) 442
SsiI CCGC 4 cut(s) 157, 182, 239, 424
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 49
StuI AGGCCT 1 cut(s) 442
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 2 cut(s) 226, 395
TaaI ACNGT 2 cut(s) 204, 293
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 20, 80
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 1 cut(s) 349
TseI GCWGC 2 cut(s) 184, 284
TspDTI ATGAA 2 cut(s) 239, 243
VpaK11BI GGWCC 2 cut(s) 260, 455
XceI RCATGY 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 335
XspI CTAG 1 cut(s) 444
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.