MD15G1108000.v1.1

Transcriptional regulator of RNA polII, SAGA, subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
7539648 .. 7541382
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1108000.v1.1.491

Sequence Viewer

Length: 1257 bp
ATGCAACCTCAGCAGTTCTCTAGAATTGATTTGGGTGATCTGAAAGCACAGATAGTGAAAAGGATTGGGGCCGAGAGGTCAAGGCGGTATTTTTATTACTTGAACAGGTTGTTGAGTCAGAAGCTGAGCAAGAAAGAATTTGACAAGTTGTGTCACCGGGTGCTCGGGAGTGAGAACTTGCCACTGCACAATCATTTCATACGGTCAGTCTTGAAGAATGCATGCCATGCCGAGACCCCACCACCAGTCCATTCACCAGTTCCTGCGAAGCCTGGGATACAAGCTGCAAACAGTTCTCCAAGTAGAGAAGATGGGCAGGAACAAAGCCTCTTTTCGCATCAAAATCAAAATGTACCCGCTTGGTCGAATGGGGCGTTGCCAGTGTCCCCACGAAAGGGTAGGTCCGGGATACGCGAATGGAAGCTAAGGGATAGGCCAAGCCCACTTGGACCAAATGGGAAGGTAGATACTGTATCACATCATCCCACTGGTGCCGATGATAATGGCGGTAAGTTTATTGTGGAAAACGGGGATGTGCATGCATTTGATCATCAGAGACCAATGCAACGTTTCCAACCAGTTGCTGAGCTACCTGGCAGTGAAAGAGATGGTGCAGTTCGGCGGCCCATAGAAAAACCGCGGATACACAGCAAAGACCAGACTGACTTAGCTGTTATTGATCAAGAGGAAGAAGGAGAACAATCAAACCGCATGAGTTTCTCAAGAAGTCCTCTACTTGCGCCACTGGGGATCCCATTCTACCCAGCCAGTGTAGGTGGGGCCCGCAAAGCTTTTCCAGTTGGTAGCAGCTGTGATTTTGTTAGTTATTATGACAGTGGGGGATTGTCCGATACGGAGACACTTAGAAGACGCATGGAGCAGATTGCTGCAGCACAGGGTCTTGGAGGTGTTTCTACAGAATGTGCCAATATGCTGAATAATGTGTTGGATGTGTACTTAAAGCGAATGATTAGATCCTGCGTTGAGTTGGTGGGAGGAAGGTCTACATCAGAGGCAAAAAAGAATGCTGCACCAAAGCAGCTGCAGCAGCAGATTCAAGGAAAGATTATCAACGGCATGTGGCCAAGCAATCATATGCATATACAGAGCAGCAGTGGGCCCGTGGAAGAGCAAAGATCTCGGTGCTCAATATCTTTGCTTGATTTTAAGGTTGCAATGGAGCTAAATCCACAGCAACTTGGAGAGGATTGGCCATTGCTGCTGGAGAAGATTTGTATGCAAGCATTTGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

419

Amino Acids

46.52

Weight (kDa)

8.87

Isoelectric Point (pI)

68.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 4 - 331 1.5e-65 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010904)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 1004
AccII CGCG 2 cut(s) 414, 640
AciI CCGC 8 cut(s) 85, 357, 507, 622, 638, 640, 709, 784
AclI AACGTT 1 cut(s) 568
AclWI GGATC 3 cut(s) 745, 758, 969
AcoI YGGCCR 2 cut(s) 1082, 1211
AcsI RAATTY 1 cut(s) 137
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 2 cut(s) 354, 956
AfiI CCNNNNNNNGG 2 cut(s) 394, 395
AgsI TTSAA 3 cut(s) 103, 214, 1058
AjnI CCWGG 2 cut(s) 271, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
AluBI AGCT 9 cut(s) 124, 284, 424, 589, 671, 791, 810, 1042, 1183
AluI AGCT 9 cut(s) 124, 284, 424, 589, 671, 791, 810, 1042, 1183
Alw21I GWGCWC 2 cut(s) 165, 1148
Alw26I GTCTC 3 cut(s) 227, 550, 851
AlwI GGATC 3 cut(s) 745, 758, 969
AlwNI CAGNNNCTG 3 cut(s) 124, 263, 584
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 7 cut(s) 69, 434, 623, 780, 1082, 1118, 1211
ApaI GGGCCC 2 cut(s) 784, 1122
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 8 cut(s) 69, 402, 449, 624, 780, 781, 1118, 1119
AsuC2I CCSGG 2 cut(s) 158, 406
AsuHPI GGTGA 3 cut(s) 47, 146, 246
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 402, 449
BaeGI GKGCMC 2 cut(s) 784, 1122
BalI TGGCCA 2 cut(s) 1084, 1213
BamHI GGATCC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 2 cut(s) 784, 1122
BbsI GAAGAC 1 cut(s) 874
Bbv12I GWGCWC 2 cut(s) 165, 1148
BbvCI CCTCAGC 1 cut(s) 9
BccI CCATC 2 cut(s) 305, 602
BceAI ACGGC 1 cut(s) 1090
BcgI CGANNNNNNTGC 2 cut(s) 1121, 1155
BciT130I CCWGG 2 cut(s) 273, 594
BciVI GTATCC 3 cut(s) 270, 402, 636
BclI TGATCA 2 cut(s) 547, 679
BcnI CCSGG 2 cut(s) 158, 406
BcoDI GTCTC 3 cut(s) 227, 550, 851
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 3 cut(s) 888, 915, 1043
BfuI GTATCC 3 cut(s) 270, 402, 636
BglII AGATCT 1 cut(s) 1136
BlpI GCTNAGC 2 cut(s) 125, 585
Bme1390I CCNGG 4 cut(s) 158, 273, 406, 594
Bme18I GGWCC 2 cut(s) 402, 449
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 8 cut(s) 69, 402, 449, 624, 780, 781, 1118, 1119
BmiI GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1120
BmrFI CCNGG 4 cut(s) 158, 273, 406, 594
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 755
BpiI GAAGAC 1 cut(s) 874
BpmI CTGGAG 1 cut(s) 1244
Bpu10I CCTNAGC 2 cut(s) 9, 425
Bpu1102I GCTNAGC 2 cut(s) 125, 585
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 2 cut(s) 158, 406
BsaI GGTCTC 2 cut(s) 227, 550
BsaJI CCNNGG 3 cut(s) 272, 638, 1122
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 395
Bse1I ACTGG 8 cut(s) 245, 257, 380, 493, 578, 750, 768, 797
Bse3DI GCAATG 2 cut(s) 1182, 1214
BseBI CCWGG 2 cut(s) 273, 594
BseDI CCNNGG 3 cut(s) 272, 638, 1122
BseGI GGATG 3 cut(s) 481, 538, 955
BseLI CCNNNNNNNGG 2 cut(s) 394, 395
BseMI GCAATG 2 cut(s) 1182, 1214
BseMII CTCAG 3 cut(s) 23, 116, 576
BseNI ACTGG 8 cut(s) 245, 257, 380, 493, 578, 750, 768, 797
BseSI GKGCMC 2 cut(s) 784, 1122
BseYI CCCAGC 1 cut(s) 763
BsgI GTGCAG 3 cut(s) 170, 633, 1014
Bsh1236I CGCG 2 cut(s) 414, 640
BshFI GGCC 7 cut(s) 71, 436, 625, 782, 1084, 1120, 1213
BshNI GGYRCC 1 cut(s) 491
BsiHKAI GWGCWC 2 cut(s) 165, 1148
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 157, 405
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 394, 395
BsmAI GTCTC 3 cut(s) 227, 550, 851
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 2 cut(s) 223, 1030
BsnI GGCC 7 cut(s) 71, 436, 625, 782, 1084, 1120, 1213
Bso31I GGTCTC 2 cut(s) 227, 550
BsoBI CYCGRG 1 cut(s) 164
Bsp120I GGGCCC 2 cut(s) 780, 1118
Bsp1286I GDGCHC 4 cut(s) 165, 784, 1122, 1148
Bsp143I GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
Bsp1720I GCTNAGC 2 cut(s) 125, 585
BspACI CCGC 8 cut(s) 85, 357, 507, 622, 638, 640, 709, 784
BspANI GGCC 7 cut(s) 71, 436, 625, 782, 1084, 1120, 1213
BspCNI CTCAG 3 cut(s) 22, 117, 577
BspFNI CGCG 2 cut(s) 414, 640
BspLI GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1120
BspMAI CTGCAG 2 cut(s) 892, 1047
BspPI GGATC 3 cut(s) 745, 758, 969
BspQI GCTCTTC 1 cut(s) 1122
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 2 cut(s) 227, 550
BsrDI GCAATG 2 cut(s) 1182, 1214
BsrI ACTGG 8 cut(s) 245, 257, 380, 493, 578, 750, 768, 797
BssECI CCNNGG 3 cut(s) 272, 638, 1122
BssMI GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
Bst2UI CCWGG 2 cut(s) 273, 594
Bst4CI ACNGT 4 cut(s) 204, 293, 472, 836
Bst6I CTCTTC 1 cut(s) 1122
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 4 cut(s) 223, 540, 784, 1242
BstDEI CTNAG 6 cut(s) 9, 125, 425, 585, 667, 863
BstDSI CCRYGG 2 cut(s) 638, 1122
BstF5I GGATG 3 cut(s) 481, 538, 955
BstFNI CGCG 2 cut(s) 414, 640
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 6 cut(s) 40, 550, 682, 753, 977, 1139
BstMAI GTCTC 3 cut(s) 227, 550, 851
BstMBI GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
BstMWI GCNNNNNNNGC 6 cut(s) 10, 227, 788, 1045, 1048, 1219
BstNI CCWGG 2 cut(s) 273, 594
BstNSI RCATGY 3 cut(s) 225, 542, 1081
BstSCI CCNGG 4 cut(s) 156, 271, 404, 592
BstSFI CTRYAG 3 cut(s) 888, 915, 1043
BstSLI GKGCMC 2 cut(s) 784, 1122
BstUI CGCG 2 cut(s) 414, 640
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 3 cut(s) 750, 974, 1136
BstYI RGATCY 3 cut(s) 750, 974, 1136
BsuI GTATCC 3 cut(s) 270, 402, 636
BsuRI GGCC 7 cut(s) 71, 436, 625, 782, 1084, 1120, 1213
BtgI CCRYGG 2 cut(s) 638, 1122
BtsCI GGATG 3 cut(s) 481, 538, 955
BtsI GCAGTG 3 cut(s) 182, 604, 1120
BtsIMutI CAGTG 8 cut(s) 182, 387, 486, 604, 743, 775, 841, 1120
Cac8I GCNNGC 4 cut(s) 223, 540, 784, 1242
CaiI CAGNNNCTG 3 cut(s) 124, 263, 584
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 8 cut(s) 69, 402, 449, 624, 780, 781, 1118, 1119
Cfr42I CCGCGG 1 cut(s) 641
CseI GACGC 1 cut(s) 879
Csp6I GTAC 2 cut(s) 353, 955
CviAII CATG 6 cut(s) 222, 227, 539, 712, 874, 1078
CviQI GTAC 2 cut(s) 353, 955
DdeI CTNAG 6 cut(s) 9, 125, 425, 585, 667, 863
DpnI GATC 6 cut(s) 39, 549, 681, 752, 976, 1138
DpnII GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
DraIII CACNNNGTG 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 1082, 1211
Eam1104I CTCTTC 1 cut(s) 1122
EarI CTCTTC 1 cut(s) 1122
Eco24I GRGCYC 2 cut(s) 784, 1122
Eco31I GGTCTC 2 cut(s) 227, 550
Eco47I GGWCC 2 cut(s) 402, 449
Eco88I CYCGRG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 271, 592
EcoT22I ATGCAT 3 cut(s) 223, 544, 1101
EcoT38I GRGCYC 2 cut(s) 784, 1122
FaeI CATG 6 cut(s) 225, 230, 542, 715, 877, 1081
FaqI GGGAC 1 cut(s) 370
FatI CATG 6 cut(s) 221, 226, 538, 711, 873, 1077
FauI CCCGC 2 cut(s) 364, 791
FauNDI CATATG 1 cut(s) 1095
FbaI TGATCA 2 cut(s) 547, 679
FblI GTMKAC 1 cut(s) 1004
FokI GGATG 3 cut(s) 468, 545, 962
FriOI GRGCYC 2 cut(s) 784, 1122
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 741
GsaI CCCAGC 1 cut(s) 767
GsuI CTGGAG 1 cut(s) 1244
HaeIII GGCC 7 cut(s) 71, 436, 625, 782, 1084, 1120, 1213
HapII CCGG 2 cut(s) 157, 405
HgaI GACGC 1 cut(s) 879
HhaI GCGC 1 cut(s) 742
Hin1II CATG 6 cut(s) 225, 230, 542, 715, 877, 1081
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 2 cut(s) 115, 1054
HpaII CCGG 2 cut(s) 157, 405
HphI GGTGA 3 cut(s) 47, 146, 246
Hpy166II GTNNAC 2 cut(s) 955, 1005
Hpy188I TCNGA 5 cut(s) 42, 120, 555, 850, 1012
Hpy188III TCNNGA 5 cut(s) 21, 166, 211, 683, 723
Hpy8I GTNNAC 2 cut(s) 955, 1005
HpyAV CCTTC 3 cut(s) 454, 686, 993
HpyCH4III ACNGT 4 cut(s) 204, 293, 472, 836
HpyCH4IV ACGT 1 cut(s) 568
HpyF10VI GCNNNNNNNGC 6 cut(s) 10, 227, 788, 1045, 1048, 1219
HpyF3I CTNAG 6 cut(s) 9, 125, 425, 585, 667, 863
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 6 cut(s) 225, 230, 542, 715, 877, 1081
HspAI GCGC 1 cut(s) 740
Ksp22I TGATCA 2 cut(s) 547, 679
KspI CCGCGG 1 cut(s) 641
Kzo9I GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
LguI GCTCTTC 1 cut(s) 1122
LmnI GCTCC 2 cut(s) 877, 1180
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 1 cut(s) 152
MalI GATC 6 cut(s) 39, 549, 681, 752, 976, 1138
MboI GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
MboII GAAGA 6 cut(s) 226, 320, 701, 879, 1139, 1240
MflI RGATCY 3 cut(s) 750, 974, 1136
MhlI GDGCHC 4 cut(s) 165, 784, 1122, 1148
MlsI TGGCCA 2 cut(s) 1084, 1213
MluCI AATT 2 cut(s) 24, 137
MluNI TGGCCA 2 cut(s) 1084, 1213
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 2 cut(s) 598, 927
Mox20I TGGCCA 2 cut(s) 1084, 1213
Mph1103I ATGCAT 3 cut(s) 223, 544, 1101
MscI TGGCCA 2 cut(s) 1084, 1213
MseI TTAA 2 cut(s) 959, 1167
Msp20I TGGCCA 2 cut(s) 1084, 1213
MspA1I CMGCKG 3 cut(s) 640, 810, 1042
MspI CCGG 2 cut(s) 157, 405
MspR9I CCNGG 4 cut(s) 158, 273, 406, 594
Mva1269I GAATGC 2 cut(s) 223, 1030
MvaI CCWGG 2 cut(s) 273, 594
MvnI CGCG 2 cut(s) 414, 640
MwoI GCNNNNNNNGC 6 cut(s) 10, 227, 788, 1045, 1048, 1219
NciI CCSGG 2 cut(s) 158, 406
NdeI CATATG 1 cut(s) 1095
NdeII GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
NlaIII CATG 6 cut(s) 225, 230, 542, 715, 877, 1081
NlaIV GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1120
NmeAIII GCCGAG 2 cut(s) 97, 256
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 3 cut(s) 223, 544, 1101
NspI RCATGY 3 cut(s) 225, 542, 1081
PaeI GCATGC 2 cut(s) 225, 542
PciSI GCTCTTC 1 cut(s) 1122
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PctI GAATGC 2 cut(s) 223, 1030
PfeI GAWTC 1 cut(s) 1054
PfoI TCCNGGA 1 cut(s) 404
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp1406I AACGTT 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 271, 592
PspFI CCCAGC 1 cut(s) 763
PspGI CCWGG 2 cut(s) 271, 592
PspN4I GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1120
PspOMI GGGCCC 2 cut(s) 780, 1118
PspPI GGNCC 8 cut(s) 69, 402, 449, 624, 780, 781, 1118, 1119
PstI CTGCAG 2 cut(s) 892, 1047
PstNI CAGNNNCTG 3 cut(s) 124, 263, 584
PsuI RGATCY 3 cut(s) 750, 974, 1136
PvuII CAGCTG 2 cut(s) 810, 1042
RsaI GTAC 2 cut(s) 354, 956
RsaNI GTAC 2 cut(s) 353, 955
SacII CCGCGG 1 cut(s) 641
SapI GCTCTTC 1 cut(s) 1122
SaqAI TTAA 2 cut(s) 959, 1167
Sau3AI GATC 6 cut(s) 37, 547, 679, 750, 974, 1136
Sau96I GGNCC 8 cut(s) 69, 402, 449, 624, 780, 781, 1118, 1119
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 4 cut(s) 158, 273, 406, 594
SduI GDGCHC 4 cut(s) 165, 784, 1122, 1148
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 3 cut(s) 888, 915, 1043
Sfr303I CCGCGG 1 cut(s) 641
SgrBI CCGCGG 1 cut(s) 641
SinI GGWCC 2 cut(s) 402, 449
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
SphI GCATGC 2 cut(s) 225, 542
Sse9I AATT 2 cut(s) 24, 137
SsiI CCGC 8 cut(s) 85, 357, 507, 622, 638, 640, 709, 784
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 4 cut(s) 156, 271, 404, 592
TaaI ACNGT 4 cut(s) 204, 293, 472, 836
TaiI ACGT 1 cut(s) 571
TaqI TCGA 1 cut(s) 365
TasI AATT 2 cut(s) 24, 137
TatI WGTACW 1 cut(s) 954
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 1 cut(s) 1054
Tru1I TTAA 2 cut(s) 959, 1167
Tru9I TTAA 2 cut(s) 959, 1167
TscAI CASTG 8 cut(s) 189, 387, 493, 604, 750, 775, 841, 1120
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 8 cut(s) 189, 387, 493, 604, 750, 775, 841, 1120
VpaK11BI GGWCC 2 cut(s) 402, 449
XapI RAATTY 1 cut(s) 137
XbaI TCTAGA 1 cut(s) 20
XceI RCATGY 3 cut(s) 225, 542, 1081
XmiI GTMKAC 1 cut(s) 1004
XspI CTAG 1 cut(s) 21
Zsp2I ATGCAT 3 cut(s) 223, 544, 1101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.