pycom08g10740

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0010904
Physical Location & Seq
Reverse (-)
8971235 .. 8972497
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10740.1

Sequence Viewer

Length: 1263 bp
ATGCAACCTCAGCAGTTCTCTAGAATTGATTTGGGTGATCTGAAAGCACAGATAGTGAAGAGGATTGGGGCCGAGAGGTCAAAGCGGTATTTTTATTACTTGAATAGGTTGTTGAGTCAGAAGCTGAGCAAGAAAGAATTTGACAAGTTGTGTTACCGGGTGCTCGGGAGTGAGAACTTGCCACTGCACAATCATTTTATACGGTCAGTCTTGAAGAATGCATGCCATGCAAAGACCCCTCCACCAGTCTTTTCATCGGTTCCTGCAAAACCTGGGATACAAGCTGCAAACAGTTCTCTAAGTAGAGAAGATGGGCAGGAACAAAGCCTATTTCCGCATCAAAATCAAAATGTACCTGGTTGGTCGAATGGGGTATTGCCGGTGTCCCCACGAAAGGGTAGGTCCGGGATACGCGAACGGAAGCTAAGGGATAGGCCAAGCCCACTTGGACCAAATGGGAAGGTAGATAGTGCAGCACATCATTCCACGGGTTTAGAGGATAATGGTGGTAAGGTTATTGTGGAAAACGGGGATGTGCATCCATTTGATTATCAGAGACCAGTGCGACATCTTCAACCTGTTGCTGAGCTACCTGAGAGTGAAAGAGATGGTGCAGTTGGGGAAAGACCACGGATACACAGCAAAGACCAGGCTGACTTAGCTGTTATTGATCACGAGGAAGAGGGAGAACAATCAAACCGCTTGAGTTTCTCAAGAAGTCCTGTACTTGCGCCCCTGGGGAGCAGAAGATCGATCCCGCTCTACCCAGCCAGCGTAGGTGGGGCCCGCAAAGCTTTTCCAGTTGGTAGCAGCTGTGATGTTGTTAGCCATTATGACAGTGGGGGATTGTCCGATACGGAAACACTTAGAAAACGCATGGAGCAGATTGCTGCAGCACAGGGTCTTGGTGTAGTTTCTACAGAATGTGCCAATATGCTGAATAATGTGTTGGATGTATACTTAAAGCGATTGATTAGATCCTGCGTTGAGTTGGTGGGAGCAAGGTCTACACCAGAGCCAAAAAAGAATGCCGCACCAAAGCAGCAGCCGCAGCAGCAGATTCAAGGAAAAATTATCAATGGCATGTGGCCAAGCAATCACATGCATATGCAGAGCAGCACTGGGCCTGTGGATGAGCAAAGACCTCAGTGTTCAATATCTTTCCTTGATTTTAAGGTTGCACTGGAGCTAAATCCACAGCAACTTGGAGAGGATTGGCCGTTGCTGCTGGAGAAGATTTGTATGCAAGCATTCGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

421

Amino Acids

46.6

Weight (kDa)

8.96

Isoelectric Point (pI)

62.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 4 - 332 8.1e-66 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 760
AccI GTMKAC 2 cut(s) 957, 1007
AccII CGCG 1 cut(s) 414
AciI CCGC 7 cut(s) 85, 335, 700, 758, 787, 1032, 1049
AclWI GGATC 2 cut(s) 748, 972
AcoI YGGCCR 2 cut(s) 1088, 1217
AcsI RAATTY 1 cut(s) 137
AfaI GTAC 2 cut(s) 354, 726
AfiI CCNNNNNNNGG 2 cut(s) 394, 395
AgsI TTSAA 5 cut(s) 103, 214, 575, 1064, 1155
AjnI CCWGG 4 cut(s) 271, 355, 648, 735
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
AluBI AGCT 8 cut(s) 124, 284, 424, 589, 662, 794, 813, 1189
AluI AGCT 8 cut(s) 124, 284, 424, 589, 662, 794, 813, 1189
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 550
AlwI GGATC 2 cut(s) 748, 972
AlwNI CAGNNNCTG 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 6 cut(s) 69, 434, 783, 1088, 1124, 1217
ApaI GGGCCC 1 cut(s) 787
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 6 cut(s) 69, 402, 449, 783, 784, 1124
AsuC2I CCSGG 2 cut(s) 158, 406
AsuHPI GGTGA 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 2 cut(s) 402, 449
BaeGI GKGCMC 1 cut(s) 787
BalI TGGCCA 1 cut(s) 1090
BanII GRGCYC 1 cut(s) 787
BauI CACGAG 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 9
BccI CCATC 2 cut(s) 305, 602
BceAI ACGGC 1 cut(s) 1204
BciT130I CCWGG 4 cut(s) 273, 357, 650, 737
BciVI GTATCC 3 cut(s) 270, 402, 627
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 2 cut(s) 158, 406
BcoDI GTCTC 1 cut(s) 550
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 891, 918
BfuI GTATCC 3 cut(s) 270, 402, 627
BlpI GCTNAGC 2 cut(s) 125, 585
Bme1390I CCNGG 6 cut(s) 158, 273, 357, 406, 650, 737
Bme18I GGWCC 2 cut(s) 402, 449
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 6 cut(s) 69, 402, 449, 783, 784, 1124
BmiI GGNNCC 4 cut(s) 70, 261, 784, 785
BmrFI CCNGG 6 cut(s) 158, 273, 357, 406, 650, 737
BmrI ACTGGG 1 cut(s) 1131
BmsI GCATC 2 cut(s) 346, 547
BmuI ACTGGG 1 cut(s) 1131
BpmI CTGGAG 2 cut(s) 1205, 1250
Bpu10I CCTNAGC 2 cut(s) 9, 425
Bpu1102I GCTNAGC 2 cut(s) 125, 585
BpuEI CTTGAG 2 cut(s) 697, 724
BpuMI CCSGG 2 cut(s) 158, 406
Bsa29I ATCGAT 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 5 cut(s) 272, 486, 629, 735, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 395
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 5 cut(s) 245, 560, 800, 1126, 1188
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 4 cut(s) 273, 357, 650, 737
BseCI ATCGAT 1 cut(s) 752
BseDI CCNNGG 5 cut(s) 272, 486, 629, 735, 736
BseGI GGATG 4 cut(s) 538, 538, 958, 1138
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 2 cut(s) 394, 395
BseMII CTCAG 5 cut(s) 23, 116, 576, 585, 1160
BseNI ACTGG 5 cut(s) 245, 560, 800, 1126, 1188
BseSI GKGCMC 1 cut(s) 787
BseYI CCCAGC 1 cut(s) 766
BsgI GTGCAG 3 cut(s) 170, 492, 633
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 6 cut(s) 71, 436, 785, 1090, 1126, 1219
BshVI ATCGAT 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 3 cut(s) 157, 380, 405
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 394, 395
BsmAI GTCTC 1 cut(s) 550
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 3 cut(s) 223, 1033, 1250
BsnI GGCC 6 cut(s) 71, 436, 785, 1090, 1126, 1219
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 1 cut(s) 164
Bsp120I GGGCCC 1 cut(s) 783
Bsp1286I GDGCHC 2 cut(s) 165, 787
Bsp143I GATC 5 cut(s) 37, 670, 749, 753, 977
Bsp1720I GCTNAGC 2 cut(s) 125, 585
BspACI CCGC 7 cut(s) 85, 335, 700, 758, 787, 1032, 1049
BspANI GGCC 6 cut(s) 71, 436, 785, 1090, 1126, 1219
BspCNI CTCAG 5 cut(s) 22, 117, 577, 586, 1159
BspDI ATCGAT 1 cut(s) 752
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 4 cut(s) 70, 261, 784, 785
BspMAI CTGCAG 1 cut(s) 895
BspPI GGATC 2 cut(s) 748, 972
BspTNI GGTCTC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 760
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 5 cut(s) 245, 560, 800, 1126, 1188
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 5 cut(s) 272, 486, 629, 735, 736
BssMI GATC 5 cut(s) 37, 670, 749, 753, 977
BssNAI GTATAC 1 cut(s) 958
BssSI CACGAG 1 cut(s) 674
Bst1107I GTATAC 1 cut(s) 958
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 4 cut(s) 273, 357, 650, 737
Bst4CI ACNGT 3 cut(s) 204, 293, 839
Bst6I CTCTTC 2 cut(s) 53, 675
BstAPI GCANNNNNTGC 1 cut(s) 227
BstC8I GCNNGC 4 cut(s) 223, 772, 787, 1248
BstDEI CTNAG 9 cut(s) 9, 125, 299, 425, 585, 594, 658, 866, 1146
BstDSI CCRYGG 2 cut(s) 486, 629
BstF5I GGATG 4 cut(s) 538, 538, 958, 1138
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 5 cut(s) 40, 673, 752, 756, 980
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 5 cut(s) 37, 670, 749, 753, 977
BstMWI GCNNNNNNNGC 8 cut(s) 10, 227, 659, 791, 1048, 1051, 1054, 1225
BstNI CCWGG 4 cut(s) 273, 357, 650, 737
BstNSI RCATGY 3 cut(s) 225, 1087, 1105
BstSCI CCNGG 6 cut(s) 156, 271, 355, 404, 648, 735
BstSFI CTRYAG 2 cut(s) 891, 918
BstSLI GKGCMC 1 cut(s) 787
BstUI CGCG 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 977
BstYI RGATCY 1 cut(s) 977
BstZ17I GTATAC 1 cut(s) 958
Bsu15I ATCGAT 1 cut(s) 752
BsuI GTATCC 3 cut(s) 270, 402, 627
BsuRI GGCC 6 cut(s) 71, 436, 785, 1090, 1126, 1219
BsuTUI ATCGAT 1 cut(s) 752
BtgI CCRYGG 2 cut(s) 486, 629
BtsCI GGATG 4 cut(s) 538, 538, 958, 1138
BtsI GCAGTG 1 cut(s) 182
BtsIMutI CAGTG 6 cut(s) 182, 567, 844, 1119, 1154, 1181
Cac8I GCNNGC 4 cut(s) 223, 772, 787, 1248
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 6 cut(s) 69, 402, 449, 783, 784, 1124
ClaI ATCGAT 1 cut(s) 752
CsiI ACCWGGT 1 cut(s) 355
Csp6I GTAC 2 cut(s) 353, 725
CviAII CATG 5 cut(s) 222, 227, 877, 1084, 1102
CviQI GTAC 2 cut(s) 353, 725
DdeI CTNAG 9 cut(s) 9, 125, 299, 425, 585, 594, 658, 866, 1146
DpnI GATC 5 cut(s) 39, 672, 751, 755, 979
DpnII GATC 5 cut(s) 37, 670, 749, 753, 977
EaeI YGGCCR 2 cut(s) 1088, 1217
Eam1104I CTCTTC 2 cut(s) 53, 675
EarI CTCTTC 2 cut(s) 53, 675
Eco24I GRGCYC 1 cut(s) 787
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 402, 449
Eco88I CYCGRG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 783
EcoRII CCWGG 4 cut(s) 271, 355, 648, 735
EcoT22I ATGCAT 2 cut(s) 223, 1107
EcoT38I GRGCYC 1 cut(s) 787
FaeI CATG 5 cut(s) 225, 230, 880, 1087, 1105
FaqI GGGAC 1 cut(s) 370
FatI CATG 5 cut(s) 221, 226, 876, 1083, 1101
FauI CCCGC 2 cut(s) 765, 794
FauNDI CATATG 1 cut(s) 1107
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 2 cut(s) 957, 1007
FokI GGATG 4 cut(s) 525, 545, 965, 1145
FriOI GRGCYC 1 cut(s) 787
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 732
GsaI CCCAGC 1 cut(s) 770
GsuI CTGGAG 2 cut(s) 1205, 1250
HaeIII GGCC 6 cut(s) 71, 436, 785, 1090, 1126, 1219
HapII CCGG 3 cut(s) 157, 380, 405
HhaI GCGC 1 cut(s) 733
Hin1II CATG 5 cut(s) 225, 230, 880, 1087, 1105
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HindIII AAGCTT 1 cut(s) 792
HinfI GANTC 2 cut(s) 115, 1060
HpaII CCGG 3 cut(s) 157, 380, 405
HphI GGTGA 1 cut(s) 47
Hpy166II GTNNAC 2 cut(s) 958, 1008
Hpy188I TCNGA 4 cut(s) 42, 120, 555, 853
Hpy188III TCNNGA 5 cut(s) 21, 166, 211, 674, 714
Hpy8I GTNNAC 2 cut(s) 958, 1008
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 3 cut(s) 204, 293, 839
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 227, 659, 791, 1048, 1051, 1054, 1225
HpyF3I CTNAG 9 cut(s) 9, 125, 299, 425, 585, 594, 658, 866, 1146
Hsp92II CATG 5 cut(s) 225, 230, 880, 1087, 1105
HspAI GCGC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 5 cut(s) 37, 670, 749, 753, 977
LmnI GCTCC 4 cut(s) 741, 880, 998, 1186
LweI GCATC 2 cut(s) 346, 547
MabI ACCWGGT 1 cut(s) 355
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 152
MalI GATC 5 cut(s) 39, 672, 751, 755, 979
MbiI CCGCTC 1 cut(s) 760
MboI GATC 5 cut(s) 37, 670, 749, 753, 977
MboII GAAGA 7 cut(s) 70, 226, 320, 563, 692, 759, 1246
MflI RGATCY 1 cut(s) 977
MhlI GDGCHC 2 cut(s) 165, 787
MlsI TGGCCA 1 cut(s) 1090
MluCI AATT 3 cut(s) 24, 137, 1071
MluNI TGGCCA 1 cut(s) 1090
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 930
Mox20I TGGCCA 1 cut(s) 1090
Mph1103I ATGCAT 2 cut(s) 223, 1107
MscI TGGCCA 1 cut(s) 1090
MseI TTAA 2 cut(s) 962, 1173
MslI CAYNNNNRTG 1 cut(s) 1106
Msp20I TGGCCA 1 cut(s) 1090
MspA1I CMGCKG 1 cut(s) 813
MspI CCGG 3 cut(s) 157, 380, 405
MspR9I CCNGG 6 cut(s) 158, 273, 357, 406, 650, 737
Mva1269I GAATGC 3 cut(s) 223, 1033, 1250
MvaI CCWGG 4 cut(s) 273, 357, 650, 737
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 8 cut(s) 10, 227, 659, 791, 1048, 1051, 1054, 1225
NciI CCSGG 2 cut(s) 158, 406
NdeI CATATG 1 cut(s) 1107
NdeII GATC 5 cut(s) 37, 670, 749, 753, 977
NlaIII CATG 5 cut(s) 225, 230, 880, 1087, 1105
NlaIV GGNNCC 4 cut(s) 70, 261, 784, 785
NmeAIII GCCGAG 1 cut(s) 97
NsiI ATGCAT 2 cut(s) 223, 1107
NspI RCATGY 3 cut(s) 225, 1087, 1105
PaeI GCATGC 1 cut(s) 225
PasI CCCWGGG 1 cut(s) 736
PctI GAATGC 3 cut(s) 223, 1033, 1250
PfeI GAWTC 1 cut(s) 1060
PfoI TCCNGGA 1 cut(s) 404
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp6I CCWGG 4 cut(s) 271, 355, 648, 735
PspFI CCCAGC 1 cut(s) 766
PspGI CCWGG 4 cut(s) 271, 355, 648, 735
PspN4I GGNNCC 4 cut(s) 70, 261, 784, 785
PspOMI GGGCCC 1 cut(s) 783
PspPI GGNCC 6 cut(s) 69, 402, 449, 783, 784, 1124
PstI CTGCAG 1 cut(s) 895
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 977
PvuII CAGCTG 1 cut(s) 813
RsaI GTAC 2 cut(s) 354, 726
RsaNI GTAC 2 cut(s) 353, 725
RseI CAYNNNNRTG 1 cut(s) 1106
SaqAI TTAA 2 cut(s) 962, 1173
Sau3AI GATC 5 cut(s) 37, 670, 749, 753, 977
Sau96I GGNCC 6 cut(s) 69, 402, 449, 783, 784, 1124
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 6 cut(s) 158, 273, 357, 406, 650, 737
SduI GDGCHC 2 cut(s) 165, 787
SexAI ACCWGGT 1 cut(s) 355
SfaNI GCATC 2 cut(s) 346, 547
SfcI CTRYAG 2 cut(s) 891, 918
SinI GGWCC 2 cut(s) 402, 449
SmiMI CAYNNNNRTG 1 cut(s) 1106
SmlI CTYRAG 2 cut(s) 703, 712
SmoI CTYRAG 2 cut(s) 703, 712
SphI GCATGC 1 cut(s) 225
Sse9I AATT 3 cut(s) 24, 137, 1071
SsiI CCGC 7 cut(s) 85, 335, 700, 758, 787, 1032, 1049
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 6 cut(s) 156, 271, 355, 404, 648, 735
TaaI ACNGT 3 cut(s) 204, 293, 839
TaqI TCGA 3 cut(s) 365, 752, 1254
TasI AATT 3 cut(s) 24, 137, 1071
TatI WGTACW 1 cut(s) 724
TauI GCSGC 2 cut(s) 1034, 1051
TfiI GAWTC 1 cut(s) 1060
Tru1I TTAA 2 cut(s) 962, 1173
Tru9I TTAA 2 cut(s) 962, 1173
TscAI CASTG 6 cut(s) 189, 567, 844, 1126, 1154, 1188
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 3 cut(s) 433, 646, 872
TspRI CASTG 6 cut(s) 189, 567, 844, 1126, 1154, 1188
VpaK11BI GGWCC 2 cut(s) 402, 449
XapI RAATTY 1 cut(s) 137
XbaI TCTAGA 1 cut(s) 20
XceI RCATGY 3 cut(s) 225, 1087, 1105
XcmI CCANNNNNNNNNTGG 1 cut(s) 836
XmiI GTMKAC 2 cut(s) 957, 1007
XspI CTAG 1 cut(s) 21
Zsp2I ATGCAT 2 cut(s) 223, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.