AT4G31440

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0010904
Physical Location & Seq
Forward (+)
15253731 .. 15254870
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31440.1

Sequence Viewer

Length: 1140 bp
ATGCAACGTCTTCAAGATCCCAGGATTGATCTAGCTGAGCTAAAAGTGCATATAGTGAAGAAGGTTGGGGTTGAAAGATCTACAAGGTATTTTTACTACTTGGGCAGGTTTCTGAGTCAGAAGCTTACTAAGAGTGAGTTTGATAAGTCATGTTTCCGTCTTTTGGGGAGAGAGAATCTTTCTCTTCACAATAAGTTGATTCGTTCCATCTTGAGAAATGCATCTCTGGCTAAGTCCCCACCATCAGTTCACCAATCCGGTCACCCTGGCAAATCTTTGGTGCTTGGGAAAGAAGATGGACCTGAAGAAAGCAGATCTCTAAACCCTGACCATATTAGGAATGATCTTGCTTTGTCCAATGGGGTGTTAGCCAAGGTTAGGCCTGGAACATGTGACGACAGGACAATCAGAGATAAGCCTTGTCCGCTAGGGTCAAACGGAAAGGTTTTGGGTCCTTTTGCTTATTCAAGACCTGGTCGATATCCTGATGAAAGAGACAGTGCATTTCTTTGCCCTGCTGAACAAAAGGCGGTTTCCGGTAAAGATCAGGTTGCAGCTCCAATTAGCAGAGATGATGAAGCTCAAGTAAGGATTCTTTCCACACCTCCTGTAATGGCACCTCTGGGGATTCCATTTTGTTCGGCTAGTGTCGGTGGGGACCGCAGAACAGTTCCAGTTTCGACCAGCGCAGCTGCTATCAGTTGCTATGACAGTGGTGGATTATCAGATACAGAGATGCTGAGGAAGAGGATGGAGAATATTGCAGTAACACAGGGTCTTGGAGGGGTTTCAGCGGAGTGTTCTATTGTTTTAAATAACATGTTGGACTTGTACCTGAAGAAACTAATGAAATCATGCGTTGATTTGGCTGGAGCTCGGTCCATGAATGGAACGCCTGGAAAACACAGTTTAGAAAAACAGCAGAGCCGAGACGAGCTTGTAAATGGGGTGCGAACGAATAATAGTTTTCACATACAAACTAGCAACCAACCATCTGACATAACGCGAGAACAACATTCAGTGTCTTTGCTTGATTTTAGAGTTGCAATGGAGCTAAATCCACATCAACTTGGTGAAGACTGGCCATTGCTACGGGAAAGAATTTCCATATCTTTATTCGAGGAACGAGAAGGGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

379

Amino Acids

41.8

Weight (kDa)

8.94

Isoelectric Point (pI)

45.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 5 - 290 1.4e-57 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 616
AccII CGCG 1 cut(s) 1006
AciI CCGC 4 cut(s) 425, 530, 661, 794
AclWI GGATC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 1082
AcsI RAATTY 1 cut(s) 1101
AcuI CTGAAG 2 cut(s) 324, 857
AfaI GTAC 1 cut(s) 833
AfiI CCNNNNNNNGG 2 cut(s) 163, 378
AflIII ACRYGT 2 cut(s) 389, 819
AgsI TTSAA 3 cut(s) 14, 74, 468
AjnI CCWGG 5 cut(s) 20, 265, 382, 472, 895
AluBI AGCT 9 cut(s) 35, 40, 124, 557, 581, 692, 875, 937, 1054
AluI AGCT 9 cut(s) 35, 40, 124, 557, 581, 692, 875, 937, 1054
Alw21I GWGCWC 1 cut(s) 877
Alw26I GTCTC 2 cut(s) 489, 924
AlwI GGATC 1 cut(s) 11
AoxI GGCC 2 cut(s) 380, 1082
ApeKI GCWGC 3 cut(s) 554, 689, 692
ApoI RAATTY 1 cut(s) 1101
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 4 cut(s) 299, 452, 658, 879
AsuHPI GGTGA 3 cut(s) 242, 254, 1085
AvaII GGWCC 4 cut(s) 299, 452, 658, 879
BalI TGGCCA 1 cut(s) 1084
BanI GGYRCC 1 cut(s) 616
BanII GRGCYC 1 cut(s) 877
BbsI GAAGAC 2 cut(s) 2, 1083
Bbv12I GWGCWC 1 cut(s) 877
BbvCI CCTCAGC 1 cut(s) 740
BbvI GCAGC 3 cut(s) 566, 679, 701
BccI CCATC 5 cut(s) 215, 250, 290, 745, 1000
BciT130I CCWGG 5 cut(s) 22, 267, 384, 474, 897
BcoDI GTCTC 2 cut(s) 489, 924
BfaI CTAG 4 cut(s) 32, 428, 645, 981
BfuAI ACCTGC 1 cut(s) 96
BglII AGATCT 2 cut(s) 77, 314
BisI GCNGC 3 cut(s) 555, 690, 693
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 3 cut(s) 556, 691, 694
Bme1390I CCNGG 5 cut(s) 22, 267, 384, 474, 897
Bme18I GGWCC 4 cut(s) 299, 452, 658, 879
BmgT120I GGNCC 4 cut(s) 299, 452, 658, 879
BmiI GGNNCC 3 cut(s) 453, 618, 659
BmrFI CCNGG 5 cut(s) 22, 267, 384, 474, 897
BmsI GCATC 2 cut(s) 230, 726
BpiI GAAGAC 2 cut(s) 2, 1083
BpmI CTGGAG 1 cut(s) 891
Bpu10I CCTNAGC 1 cut(s) 740
Bpu1102I GCTNAGC 1 cut(s) 36
BpuEI CTTGAG 2 cut(s) 232, 567
BsaJI CCNNGG 3 cut(s) 20, 265, 372
BsaWI WCCGGW 2 cut(s) 257, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 378
Bse1I ACTGG 2 cut(s) 674, 1085
Bse3DI GCAATG 2 cut(s) 1053, 1085
BseBI CCWGG 5 cut(s) 22, 267, 384, 474, 897
BseDI CCNNGG 3 cut(s) 20, 265, 372
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 2 cut(s) 163, 378
BseMI GCAATG 2 cut(s) 1053, 1085
BseMII CTCAG 3 cut(s) 27, 104, 731
BseNI ACTGG 2 cut(s) 674, 1085
BseXI GCAGC 3 cut(s) 566, 679, 701
Bsh1236I CGCG 1 cut(s) 1006
BshFI GGCC 2 cut(s) 382, 1084
BshNI GGYRCC 1 cut(s) 616
BsiHKAI GWGCWC 1 cut(s) 877
BsiSI CCGG 2 cut(s) 258, 537
BslFI GGGAC 2 cut(s) 220, 671
BslI CCNNNNNNNGG 2 cut(s) 163, 378
BsmAI GTCTC 2 cut(s) 489, 924
BsmBI CGTCTC 1 cut(s) 924
BsmFI GGGAC 2 cut(s) 220, 671
BsnI GGCC 2 cut(s) 382, 1084
Bsp1286I GDGCHC 1 cut(s) 877
Bsp143I GATC 6 cut(s) 16, 28, 77, 314, 343, 544
Bsp1720I GCTNAGC 1 cut(s) 36
BspACI CCGC 4 cut(s) 425, 530, 661, 794
BspANI GGCC 2 cut(s) 382, 1084
BspCNI CTCAG 3 cut(s) 28, 105, 732
BspFNI CGCG 1 cut(s) 1006
BspLI GGNNCC 3 cut(s) 453, 618, 659
BspMI ACCTGC 1 cut(s) 96
BspPI GGATC 1 cut(s) 11
BspT107I GGYRCC 1 cut(s) 616
BsrDI GCAATG 2 cut(s) 1053, 1085
BsrI ACTGG 2 cut(s) 674, 1085
BssECI CCNNGG 3 cut(s) 20, 265, 372
BssMI GATC 6 cut(s) 16, 28, 77, 314, 343, 544
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 5 cut(s) 22, 267, 384, 474, 897
Bst4CI ACNGT 4 cut(s) 500, 670, 713, 908
Bst6I CTCTTC 2 cut(s) 189, 740
BstDEI CTNAG 5 cut(s) 36, 113, 129, 231, 740
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 756
BstFNI CGCG 1 cut(s) 1006
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 6 cut(s) 19, 31, 80, 317, 346, 547
BstMAI GTCTC 2 cut(s) 489, 924
BstMBI GATC 6 cut(s) 16, 28, 77, 314, 343, 544
BstMWI GCNNNNNNNGC 3 cut(s) 46, 227, 424
BstNI CCWGG 5 cut(s) 22, 267, 384, 474, 897
BstNSI RCATGY 2 cut(s) 393, 823
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 5 cut(s) 20, 265, 382, 472, 895
BstUI CGCG 1 cut(s) 1006
BstV1I GCAGC 3 cut(s) 566, 679, 701
BstV2I GAAGAC 2 cut(s) 2, 1083
BstX2I RGATCY 3 cut(s) 16, 77, 314
BstYI RGATCY 3 cut(s) 16, 77, 314
BsuRI GGCC 2 cut(s) 382, 1084
BtsCI GGATG 1 cut(s) 756
BtsIMutI CAGTG 3 cut(s) 505, 718, 1026
BveI ACCTGC 1 cut(s) 96
CfoI GCGC 1 cut(s) 689
Cfr13I GGNCC 4 cut(s) 299, 452, 658, 879
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 1 cut(s) 832
CviAII CATG 5 cut(s) 150, 390, 820, 855, 883
CviQI GTAC 1 cut(s) 832
DdeI CTNAG 5 cut(s) 36, 113, 129, 231, 740
DpnI GATC 6 cut(s) 18, 30, 79, 316, 345, 546
DpnII GATC 6 cut(s) 16, 28, 77, 314, 343, 544
DraI TTTAAA 1 cut(s) 813
EaeI YGGCCR 1 cut(s) 1082
Eam1104I CTCTTC 2 cut(s) 189, 740
EarI CTCTTC 2 cut(s) 189, 740
Ecl136II GAGCTC 1 cut(s) 875
Eco130I CCWWGG 1 cut(s) 372
Eco147I AGGCCT 1 cut(s) 382
Eco24I GRGCYC 1 cut(s) 877
Eco32I GATATC 1 cut(s) 482
Eco47I GGWCC 4 cut(s) 299, 452, 658, 879
Eco53kI GAGCTC 1 cut(s) 875
Eco57I CTGAAG 2 cut(s) 324, 857
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 875
EcoO109I RGGNCCY 1 cut(s) 452
EcoO65I GGTNACC 1 cut(s) 260
EcoRII CCWGG 5 cut(s) 20, 265, 382, 472, 895
EcoRV GATATC 1 cut(s) 482
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 877
ErhI CCWWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 924
FaeI CATG 5 cut(s) 153, 393, 823, 858, 886
FaqI GGGAC 2 cut(s) 220, 671
FatI CATG 5 cut(s) 149, 389, 819, 854, 882
Fnu4HI GCNGC 3 cut(s) 555, 690, 693
FokI GGATG 1 cut(s) 763
FriOI GRGCYC 1 cut(s) 877
Fsp4HI GCNGC 3 cut(s) 555, 690, 693
FspBI CTAG 4 cut(s) 32, 428, 645, 981
GlaI GCGC 1 cut(s) 688
GluI GCNGC 3 cut(s) 555, 690, 693
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 2 cut(s) 382, 1084
HapII CCGG 2 cut(s) 258, 537
HhaI GCGC 1 cut(s) 689
Hin1II CATG 5 cut(s) 153, 393, 823, 858, 886
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HindIII AAGCTT 1 cut(s) 122
HinfI GANTC 5 cut(s) 115, 175, 199, 592, 628
HpaII CCGG 2 cut(s) 258, 537
HphI GGTGA 3 cut(s) 242, 254, 1085
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 5 cut(s) 114, 120, 410, 727, 997
Hpy188III TCNNGA 4 cut(s) 14, 211, 468, 485
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 55, 1124
HpyCH4III ACNGT 4 cut(s) 500, 670, 713, 908
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 7 cut(s) 4, 49, 221, 503, 554, 764, 1046
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 227, 424
HpyF3I CTNAG 5 cut(s) 36, 113, 129, 231, 740
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 5 cut(s) 153, 393, 823, 858, 886
HspAI GCGC 1 cut(s) 687
Kzo9I GATC 6 cut(s) 16, 28, 77, 314, 343, 544
LmnI GCTCC 3 cut(s) 562, 872, 1051
Lsp1109I GCAGC 3 cut(s) 566, 679, 701
LweI GCATC 2 cut(s) 230, 726
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 4 cut(s) 32, 428, 645, 981
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 260, 392, 766
MalI GATC 6 cut(s) 18, 30, 79, 316, 345, 546
MboI GATC 6 cut(s) 16, 28, 77, 314, 343, 544
MboII GAAGA 7 cut(s) 70, 176, 305, 317, 757, 850, 1088
MflI RGATCY 3 cut(s) 16, 77, 314
MhlI GDGCHC 1 cut(s) 877
MlsI TGGCCA 1 cut(s) 1084
MluCI AATT 2 cut(s) 561, 1101
MluNI TGGCCA 1 cut(s) 1084
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 804
MnlI CCTC 6 cut(s) 615, 630, 735, 741, 776, 1114
Mox20I TGGCCA 1 cut(s) 1084
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 1084
MseI TTAA 1 cut(s) 812
Msp20I TGGCCA 1 cut(s) 1084
MspA1I CMGCKG 2 cut(s) 692, 794
MspI CCGG 2 cut(s) 258, 537
MspR9I CCNGG 5 cut(s) 22, 267, 384, 474, 897
MvaI CCWGG 5 cut(s) 22, 267, 384, 474, 897
MvnI CGCG 1 cut(s) 1006
MwoI GCNNNNNNNGC 3 cut(s) 46, 227, 424
NdeII GATC 6 cut(s) 16, 28, 77, 314, 343, 544
NlaIII CATG 5 cut(s) 153, 393, 823, 858, 886
NlaIV GGNNCC 3 cut(s) 453, 618, 659
NmeAIII GCCGAG 1 cut(s) 953
NmuCI GTSAC 2 cut(s) 260, 392
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 2 cut(s) 393, 823
PceI AGGCCT 1 cut(s) 382
PciI ACATGT 2 cut(s) 389, 819
PfeI GAWTC 4 cut(s) 175, 199, 592, 628
PflFI GACNNNGTC 1 cut(s) 474
PkrI GCNGC 3 cut(s) 556, 691, 694
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
PpuMI RGGWCCY 1 cut(s) 452
PscI ACATGT 2 cut(s) 389, 819
Psp124BI GAGCTC 1 cut(s) 877
Psp5II RGGWCCY 1 cut(s) 452
Psp6I CCWGG 5 cut(s) 20, 265, 382, 472, 895
PspEI GGTNACC 1 cut(s) 260
PspGI CCWGG 5 cut(s) 20, 265, 382, 472, 895
PspN4I GGNNCC 3 cut(s) 453, 618, 659
PspPI GGNCC 4 cut(s) 299, 452, 658, 879
PspPPI RGGWCCY 1 cut(s) 452
PsuI RGATCY 3 cut(s) 16, 77, 314
PsyI GACNNNGTC 1 cut(s) 474
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 1 cut(s) 833
RsaNI GTAC 1 cut(s) 832
SacI GAGCTC 1 cut(s) 877
SaqAI TTAA 1 cut(s) 812
SatI GCNGC 3 cut(s) 555, 690, 693
Sau3AI GATC 6 cut(s) 16, 28, 77, 314, 343, 544
Sau96I GGNCC 4 cut(s) 299, 452, 658, 879
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 5 cut(s) 22, 267, 384, 474, 897
SduI GDGCHC 1 cut(s) 877
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 2 cut(s) 230, 726
SinI GGWCC 4 cut(s) 299, 452, 658, 879
SmlI CTYRAG 2 cut(s) 211, 582
SmoI CTYRAG 2 cut(s) 211, 582
Sse9I AATT 2 cut(s) 561, 1101
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 4 cut(s) 425, 530, 661, 794
SspI AATATT 1 cut(s) 760
SspMI CTAG 4 cut(s) 32, 428, 645, 981
SstI GAGCTC 1 cut(s) 877
StuI AGGCCT 1 cut(s) 382
StyD4I CCNGG 5 cut(s) 20, 265, 382, 472, 895
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 4 cut(s) 500, 670, 713, 908
TaiI ACGT 1 cut(s) 10
TaqI TCGA 3 cut(s) 478, 680, 1119
TaqII GACCGA 1 cut(s) 867
TasI AATT 2 cut(s) 561, 1101
TfiI GAWTC 4 cut(s) 175, 199, 592, 628
Tru1I TTAA 1 cut(s) 812
Tru9I TTAA 1 cut(s) 812
TscAI CASTG 3 cut(s) 505, 718, 1026
TseFI GTSAC 2 cut(s) 260, 392
TseI GCWGC 3 cut(s) 554, 689, 692
Tsp45I GTSAC 2 cut(s) 260, 392
TspDTI ATGAA 4 cut(s) 504, 591, 863, 899
TspGWI ACGGA 2 cut(s) 146, 453
TspRI CASTG 3 cut(s) 505, 718, 1026
Tth111I GACNNNGTC 1 cut(s) 474
VpaK11BI GGWCC 4 cut(s) 299, 452, 658, 879
XapI RAATTY 1 cut(s) 1101
XceI RCATGY 2 cut(s) 393, 823
XspI CTAG 4 cut(s) 32, 428, 645, 981
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.