Rmu_co8321821.1_g000001

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8321821.1
OG0010904
Physical Location & Seq
Forward (+)
1 .. 735
735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8321821.1_g000001.1.cds

Sequence Viewer

Length: 735 bp
acggagaatggggatgcaaatccatttgattatcagagaccaatgcagcatcttcaaccagttgccgagctacctgaacgtgaaagagatggtgcagttaggcgacccacaggaaaaccacagatactcagcaatcaggtcaactttgcagttatggaagatggggaagaggcggaacagtcaaaccatttgagtttctccagaagtcctcttcttgctccacttgggatcccattctactcagccagtgtaggtggggcccgcaaagctattccggtgggtagcagctgtgattttgttagctattatgacagtggggttttgtctgatacggagaccctgagaaaccgtatggagcagattgctgcagcacaaggtgttggaggtgtttctatggaatgtgccaatatgttaaataatgtgttggatgtgtacttaaagcaattgatcaaatcctgtgttgagctggtgggatcaaggtctggtttagagccaagaaagaatgctgcaccaaagcagcagattcaaggaaaggttattaatggcatgtggccaagcaatcacccgcatatgcagggcagcaatgggcccttggaagtttcacaggaggaaagaccgcagcgctcaatatctttgcttgattttaaggttgcaatggagctaaatccacagcaacttggagaagactggccattgctgctggagaagatttgtatgcagtcatttgaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

244

Amino Acids

26.92

Weight (kDa)

5.05

Isoelectric Point (pI)

53.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 173, 262, 566, 617
AclWI GGATC 3 cut(s) 223, 236, 481
AcoI YGGCCR 2 cut(s) 551, 689
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 1 cut(s) 434
AfeI AGCGCT 1 cut(s) 623
AgsI TTSAA 2 cut(s) 56, 527
AluBI AGCT 6 cut(s) 70, 269, 288, 303, 466, 661
AluI AGCT 6 cut(s) 70, 269, 288, 303, 466, 661
Alw26I GTCTC 2 cut(s) 31, 329
AlwI GGATC 3 cut(s) 223, 236, 481
Aor51HI AGCGCT 1 cut(s) 623
AoxI GGCC 4 cut(s) 258, 551, 587, 689
ApaI GGGCCC 2 cut(s) 262, 591
ApeKI GCWGC 9 cut(s) 46, 285, 365, 368, 506, 517, 579, 619, 697
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 1 cut(s) 624
AspS9I GGNCC 4 cut(s) 258, 259, 587, 588
AsuHPI GGTGA 1 cut(s) 554
BaeGI GKGCMC 2 cut(s) 262, 591
BalI TGGCCA 2 cut(s) 553, 691
BamHI GGATCC 1 cut(s) 228
BanII GRGCYC 2 cut(s) 262, 591
BbsI GAAGAC 1 cut(s) 690
BbvI GCAGC 9 cut(s) 58, 297, 352, 380, 493, 529, 591, 631, 684
BccI CCATC 2 cut(s) 83, 155
BclI TGATCA 1 cut(s) 447
BcoDI GTCTC 2 cut(s) 31, 329
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 625
BisI GCNGC 9 cut(s) 47, 286, 366, 369, 507, 518, 580, 620, 698
BlsI GCNGC 9 cut(s) 48, 287, 367, 370, 508, 519, 581, 621, 699
BmgT120I GGNCC 4 cut(s) 258, 259, 587, 588
BmiI GGNNCC 4 cut(s) 230, 259, 260, 589
BmsI GCATC 2 cut(s) 4, 58
BpiI GAAGAC 1 cut(s) 690
BpmI CTGGAG 2 cut(s) 184, 722
BsaBI GATNNNNATC 1 cut(s) 18
BsaI GGTCTC 2 cut(s) 31, 329
BsaJI CCNNGG 1 cut(s) 591
BsaWI WCCGGW 1 cut(s) 274
Bse1I ACTGG 3 cut(s) 59, 246, 692
Bse3DI GCAATG 3 cut(s) 589, 660, 692
Bse8I GATNNNNATC 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 2 cut(s) 19, 433
BseJI GATNNNNATC 1 cut(s) 18
BseMI GCAATG 3 cut(s) 589, 660, 692
BseMII CTCAG 3 cut(s) 142, 255, 332
BseNI ACTGG 3 cut(s) 59, 246, 692
BseSI GKGCMC 2 cut(s) 262, 591
BseXI GCAGC 9 cut(s) 58, 297, 352, 380, 493, 529, 591, 631, 684
BsgI GTGCAG 2 cut(s) 114, 492
BshFI GGCC 4 cut(s) 260, 553, 589, 691
BsiSI CCGG 1 cut(s) 275
BsmAI GTCTC 2 cut(s) 31, 329
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 4 cut(s) 260, 553, 589, 691
Bso31I GGTCTC 2 cut(s) 31, 329
Bsp120I GGGCCC 2 cut(s) 258, 587
Bsp1286I GDGCHC 2 cut(s) 262, 591
Bsp143I GATC 3 cut(s) 228, 447, 473
BspACI CCGC 4 cut(s) 173, 262, 566, 617
BspANI GGCC 4 cut(s) 260, 553, 589, 691
BspCNI CTCAG 3 cut(s) 141, 254, 333
BspLI GGNNCC 4 cut(s) 230, 259, 260, 589
BspMAI CTGCAG 1 cut(s) 370
BspPI GGATC 3 cut(s) 223, 236, 481
BspTNI GGTCTC 2 cut(s) 31, 329
BsrDI GCAATG 3 cut(s) 589, 660, 692
BsrI ACTGG 3 cut(s) 59, 246, 692
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 3 cut(s) 228, 447, 473
BssT1I CCWWGG 1 cut(s) 591
Bst4CI ACNGT 3 cut(s) 180, 314, 350
Bst6I CTCTTC 2 cut(s) 162, 216
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 3 cut(s) 128, 241, 341
BstF5I GGATG 2 cut(s) 19, 433
BstH2I RGCGCY 1 cut(s) 625
BstHHI GCGC 1 cut(s) 624
BstKTI GATC 3 cut(s) 231, 450, 476
BstMAI GTCTC 2 cut(s) 31, 329
BstMBI GATC 3 cut(s) 228, 447, 473
BstMWI GCNNNNNNNGC 2 cut(s) 266, 697
BstNSI RCATGY 1 cut(s) 550
BstSFI CTRYAG 1 cut(s) 366
BstSLI GKGCMC 2 cut(s) 262, 591
BstV1I GCAGC 9 cut(s) 58, 297, 352, 380, 493, 529, 591, 631, 684
BstV2I GAAGAC 1 cut(s) 690
BstX2I RGATCY 1 cut(s) 228
BstYI RGATCY 1 cut(s) 228
BsuRI GGCC 4 cut(s) 260, 553, 589, 691
BtsCI GGATG 2 cut(s) 19, 433
BtsIMutI CAGTG 2 cut(s) 253, 319
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 1 cut(s) 624
Cfr13I GGNCC 4 cut(s) 258, 259, 587, 588
Csp6I GTAC 1 cut(s) 433
CviAII CATG 1 cut(s) 547
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 3 cut(s) 128, 241, 341
DpnI GATC 3 cut(s) 230, 449, 475
DpnII GATC 3 cut(s) 228, 447, 473
DraIII CACNNNGTG 1 cut(s) 377
EaeI YGGCCR 2 cut(s) 551, 689
Eam1104I CTCTTC 2 cut(s) 162, 216
EarI CTCTTC 2 cut(s) 162, 216
EciI GGCGGA 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 2 cut(s) 262, 591
Eco31I GGTCTC 2 cut(s) 31, 329
Eco47III AGCGCT 1 cut(s) 623
EcoO109I RGGNCCY 2 cut(s) 258, 588
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 2 cut(s) 262, 591
ErhI CCWWGG 1 cut(s) 591
FaeI CATG 1 cut(s) 550
FaiI YATR 9 cut(s) 155, 309, 353, 395, 410, 548, 570, 572, 716
FatI CATG 1 cut(s) 546
FauI CCCGC 2 cut(s) 269, 573
FauNDI CATATG 1 cut(s) 570
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 9 cut(s) 47, 286, 366, 369, 507, 518, 580, 620, 698
FokI GGATG 2 cut(s) 26, 440
FriOI GRGCYC 2 cut(s) 262, 591
Fsp4HI GCNGC 9 cut(s) 47, 286, 366, 369, 507, 518, 580, 620, 698
GlaI GCGC 1 cut(s) 623
GluI GCNGC 9 cut(s) 47, 286, 366, 369, 507, 518, 580, 620, 698
GsuI CTGGAG 2 cut(s) 184, 722
HaeII RGCGCY 1 cut(s) 625
HaeIII GGCC 4 cut(s) 260, 553, 589, 691
HapII CCGG 1 cut(s) 275
HhaI GCGC 1 cut(s) 624
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 622
HinP1I GCGC 1 cut(s) 622
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 1 cut(s) 523
HpaII CCGG 1 cut(s) 275
HphI GGTGA 1 cut(s) 554
Hpy166II GTNNAC 2 cut(s) 142, 433
Hpy188I TCNGA 2 cut(s) 36, 328
Hpy188III TCNNGA 1 cut(s) 201
Hpy8I GTNNAC 2 cut(s) 142, 433
HpyCH4III ACNGT 3 cut(s) 180, 314, 350
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 9 cut(s) 17, 46, 95, 149, 368, 509, 574, 653, 718
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 697
HpyF3I CTNAG 3 cut(s) 128, 241, 341
HpySE526I ACGT 1 cut(s) 79
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 622
Ksp22I TGATCA 1 cut(s) 447
Kzo9I GATC 3 cut(s) 228, 447, 473
LmnI GCTCC 3 cut(s) 223, 355, 658
Lsp1109I GCAGC 9 cut(s) 58, 297, 352, 380, 493, 529, 591, 631, 684
LweI GCATC 2 cut(s) 4, 58
MaeII ACGT 1 cut(s) 79
MalI GATC 3 cut(s) 230, 449, 475
MboI GATC 3 cut(s) 228, 447, 473
MboII GAAGA 6 cut(s) 44, 170, 179, 203, 695, 718
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 1 cut(s) 228
MhlI GDGCHC 2 cut(s) 262, 591
MlsI TGGCCA 2 cut(s) 553, 691
MluCI AATT 1 cut(s) 443
MluNI TGGCCA 2 cut(s) 553, 691
MmeI TCCRAC 2 cut(s) 361, 405
MnlI CCTC 5 cut(s) 163, 219, 377, 601, 721
Mox20I TGGCCA 2 cut(s) 553, 691
MscI TGGCCA 2 cut(s) 553, 691
MseI TTAA 4 cut(s) 413, 437, 540, 645
Msp20I TGGCCA 2 cut(s) 553, 691
MspA1I CMGCKG 1 cut(s) 288
MspI CCGG 1 cut(s) 275
MunI CAATTG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 508
MwoI GCNNNNNNNGC 2 cut(s) 266, 697
NdeI CATATG 1 cut(s) 570
NdeII GATC 3 cut(s) 228, 447, 473
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 4 cut(s) 230, 259, 260, 589
NmeAIII GCCGAG 1 cut(s) 91
NspI RCATGY 1 cut(s) 550
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 1 cut(s) 523
PkrI GCNGC 9 cut(s) 48, 287, 367, 370, 508, 519, 581, 621, 699
PshBI ATTAAT 1 cut(s) 540
PspN4I GGNNCC 4 cut(s) 230, 259, 260, 589
PspOMI GGGCCC 2 cut(s) 258, 587
PspPI GGNCC 4 cut(s) 258, 259, 587, 588
PstI CTGCAG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 288
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
SaqAI TTAA 4 cut(s) 413, 437, 540, 645
SatI GCNGC 9 cut(s) 47, 286, 366, 369, 507, 518, 580, 620, 698
Sau3AI GATC 3 cut(s) 228, 447, 473
Sau96I GGNCC 4 cut(s) 258, 259, 587, 588
SduI GDGCHC 2 cut(s) 262, 591
SfaNI GCATC 2 cut(s) 4, 58
SfcI CTRYAG 1 cut(s) 366
Sse9I AATT 1 cut(s) 443
SsiI CCGC 4 cut(s) 173, 262, 566, 617
StyI CCWWGG 1 cut(s) 591
TaaI ACNGT 3 cut(s) 180, 314, 350
TaiI ACGT 1 cut(s) 82
TasI AATT 1 cut(s) 443
TatI WGTACW 1 cut(s) 432
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 4 cut(s) 413, 437, 540, 645
Tru9I TTAA 4 cut(s) 413, 437, 540, 645
TscAI CASTG 2 cut(s) 253, 319
TseI GCWGC 9 cut(s) 46, 285, 365, 368, 506, 517, 579, 619, 697
TspGWI ACGGA 2 cut(s) 17, 347
TspRI CASTG 2 cut(s) 253, 319
VspI ATTAAT 1 cut(s) 540
XceI RCATGY 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.