pycom15g09870

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010904
Physical Location & Seq
Reverse (-)
6420888 .. 6422081
1194 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g09870.1

Sequence Viewer

Length: 1194 bp
ATGCAACCTCAGCAGTTCTCTAGAATTGATTTGGGTGATCTGAAAGCACAGATAGTGAAAAGGATTGGGGCCGAGAGGTCAAAGCGGTATTTTTATTACTTGAACAGGTTGTTGAGTCAGAAGCTGAGCAAGAAAGAATTTGACAAGTTGTGTCACCGGGTGCTCGGGATTGAGAACTTGCCACTGCACAATCATTTCATACAGTCAGTCTTGAAGAATGCATGCCAAGCCGAGACCCCACCACCAGTCCATTCACCAGTTCCTGCGAAACCTGGGATACAAGCTGCAAACAGTTCTCCAAGTAGAGAAGATGGGCAGGAACAAAGCCTCTTTTCGCATCAAAATCAAAATGTACCCACTTGGTCGAATGGGGCGTTGCCAGTGTCCCCACGAAAGGGTAGGTCTGGGATACGCGAATGGAAGCTAAGGGATAGGCCAAGCCCACTTGGACCAAATGGGAAGGTAGATACTGTATCACTTCATCCGACTGGTGCCGATGATAATGGCGGTAAGTTTATTGTCGAAAACGGGGATGTGCATGCATTTGATTATCAGAGACCAATGCAACGTTTCCAACCAGTTGCTGAGCTACCTGGCAGTGAAAGAGATGGTGCAGTTCGGCGGCCCATAGAAAAACTGCGGATACACAGCAAAGACCAGACTGACTTAGCTGTTATTGATCAAGAGGAAGAGGGAGAACAATCAAACCGCATGAGTTTCTCAAGAAGTCCTCTACTTGCGCCACTGGGGATCCCACTCTACCCAGCCAGCGTAGGTGGGGCCCGCAAAGCTTTTCCGGTTGGGAGCAGCTGTGATTTTGTTAGTTATTATGACAGTGGGGGATTGTCCAATACGGAGACACTTAGAAGACGCATGGAGCAGATTGCTGCAGCACAGGGTCTTGGAGGTGTTTCTACAGAATGTGCCAATATGCTGAATAATGTGTTGGATGTGTACTTAAAGCGATTGATTAGATCCTGCGTTGAGTTGGTGGGAGGAAGGTCTACATCAGAGCCAAAAAAGAATGCTGCACCAAAGCAGCAGCAGCAGCAGCAGCAGATTCAAGGAAAGATTATCAATGGCATGTGGCCAAGCAATCACATGCATATGCAGAGCAGCAGTGGGCCCGTGGAAGAGCAAAGATCGATCGGTGCTCAATATCTTTGCTTGATTTTAAGGTTGCAATGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

398

Amino Acids

44.13

Weight (kDa)

9.37

Isoelectric Point (pI)

68.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 4 - 331 3.3e-63 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 1004
AccII CGCG 1 cut(s) 414
AciI CCGC 6 cut(s) 85, 507, 622, 640, 709, 784
AclI AACGTT 1 cut(s) 568
AclWI GGATC 3 cut(s) 745, 758, 969
AcoI YGGCCR 1 cut(s) 1088
AcsI RAATTY 1 cut(s) 137
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 2 cut(s) 354, 956
AfiI CCNNNNNNNGG 2 cut(s) 394, 395
AgsI TTSAA 3 cut(s) 103, 214, 1064
AjnI CCWGG 2 cut(s) 271, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
AluBI AGCT 8 cut(s) 124, 284, 424, 589, 671, 791, 810, 1191
AluI AGCT 8 cut(s) 124, 284, 424, 589, 671, 791, 810, 1191
Alw21I GWGCWC 2 cut(s) 165, 1156
Alw26I GTCTC 3 cut(s) 227, 550, 851
AlwI GGATC 3 cut(s) 745, 758, 969
AlwNI CAGNNNCTG 3 cut(s) 124, 263, 584
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 6 cut(s) 69, 434, 623, 780, 1088, 1124
ApaI GGGCCC 2 cut(s) 784, 1128
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 742
AspS9I GGNCC 7 cut(s) 69, 449, 624, 780, 781, 1124, 1125
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 3 cut(s) 47, 146, 246
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 2 cut(s) 784, 1128
BalI TGGCCA 1 cut(s) 1090
BamHI GGATCC 1 cut(s) 750
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 2 cut(s) 784, 1128
BbsI GAAGAC 1 cut(s) 874
Bbv12I GWGCWC 2 cut(s) 165, 1156
BbvCI CCTCAGC 1 cut(s) 9
BccI CCATC 2 cut(s) 305, 602
BciT130I CCWGG 2 cut(s) 273, 594
BciVI GTATCC 3 cut(s) 270, 402, 636
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 3 cut(s) 227, 550, 851
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 888, 915
BfuI GTATCC 3 cut(s) 270, 402, 636
BlpI GCTNAGC 2 cut(s) 125, 585
Bme1390I CCNGG 3 cut(s) 158, 273, 594
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 7 cut(s) 69, 449, 624, 780, 781, 1124, 1125
BmiI GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1126
BmrFI CCNGG 3 cut(s) 158, 273, 594
BmrI ACTGGG 1 cut(s) 755
BmsI GCATC 1 cut(s) 346
BmuI ACTGGG 1 cut(s) 755
BpiI GAAGAC 1 cut(s) 874
Bpu10I CCTNAGC 2 cut(s) 9, 425
Bpu1102I GCTNAGC 2 cut(s) 125, 585
BpuEI CTTGAG 1 cut(s) 706
BpuMI CCSGG 1 cut(s) 158
Bsa29I ATCGAT 1 cut(s) 1145
BsaI GGTCTC 2 cut(s) 227, 550
BsaJI CCNNGG 2 cut(s) 272, 1128
BsaWI WCCGGW 1 cut(s) 796
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 395
Bse1I ACTGG 6 cut(s) 245, 257, 380, 493, 578, 750
Bse3DI GCAATG 1 cut(s) 1190
BseBI CCWGG 2 cut(s) 273, 594
BseCI ATCGAT 1 cut(s) 1145
BseDI CCNNGG 2 cut(s) 272, 1128
BseGI GGATG 3 cut(s) 481, 538, 955
BseLI CCNNNNNNNGG 2 cut(s) 394, 395
BseMI GCAATG 1 cut(s) 1190
BseMII CTCAG 3 cut(s) 23, 116, 576
BseNI ACTGG 6 cut(s) 245, 257, 380, 493, 578, 750
BseSI GKGCMC 2 cut(s) 784, 1128
BseYI CCCAGC 1 cut(s) 763
BsgI GTGCAG 3 cut(s) 170, 633, 1014
Bsh1236I CGCG 1 cut(s) 414
Bsh1285I CGRYCG 1 cut(s) 1149
BshFI GGCC 6 cut(s) 71, 436, 625, 782, 1090, 1126
BshNI GGYRCC 1 cut(s) 491
BshVI ATCGAT 1 cut(s) 1145
BsiEI CGRYCG 1 cut(s) 1149
BsiHKAI GWGCWC 2 cut(s) 165, 1156
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 157, 797
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 394, 395
BsmAI GTCTC 3 cut(s) 227, 550, 851
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 2 cut(s) 223, 1030
BsnI GGCC 6 cut(s) 71, 436, 625, 782, 1090, 1126
Bso31I GGTCTC 2 cut(s) 227, 550
BsoBI CYCGRG 1 cut(s) 164
Bsp120I GGGCCC 2 cut(s) 780, 1124
Bsp1286I GDGCHC 4 cut(s) 165, 784, 1128, 1156
Bsp143I GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
Bsp1720I GCTNAGC 2 cut(s) 125, 585
BspACI CCGC 6 cut(s) 85, 507, 622, 640, 709, 784
BspANI GGCC 6 cut(s) 71, 436, 625, 782, 1090, 1126
BspCNI CTCAG 3 cut(s) 22, 117, 577
BspDI ATCGAT 1 cut(s) 1145
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1126
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 3 cut(s) 745, 758, 969
BspQI GCTCTTC 1 cut(s) 1128
BspT107I GGYRCC 1 cut(s) 491
BspTNI GGTCTC 2 cut(s) 227, 550
BsrDI GCAATG 1 cut(s) 1190
BsrI ACTGG 6 cut(s) 245, 257, 380, 493, 578, 750
BssECI CCNNGG 2 cut(s) 272, 1128
BssMI GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
Bst2UI CCWGG 2 cut(s) 273, 594
Bst4CI ACNGT 4 cut(s) 204, 293, 472, 836
Bst6I CTCTTC 2 cut(s) 684, 1128
BstC8I GCNNGC 4 cut(s) 223, 540, 769, 784
BstDEI CTNAG 6 cut(s) 9, 125, 425, 585, 667, 863
BstDSI CCRYGG 1 cut(s) 1128
BstF5I GGATG 3 cut(s) 481, 538, 955
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 742
BstKTI GATC 6 cut(s) 40, 682, 753, 977, 1145, 1149
BstMAI GTCTC 3 cut(s) 227, 550, 851
BstMBI GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
BstMCI CGRYCG 1 cut(s) 1149
BstMWI GCNNNNNNNGC 7 cut(s) 10, 227, 788, 1045, 1048, 1051, 1054
BstNI CCWGG 2 cut(s) 273, 594
BstNSI RCATGY 4 cut(s) 225, 542, 1087, 1105
BstSCI CCNGG 3 cut(s) 156, 271, 592
BstSFI CTRYAG 2 cut(s) 888, 915
BstSLI GKGCMC 2 cut(s) 784, 1128
BstUI CGCG 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 2 cut(s) 750, 974
BstYI RGATCY 2 cut(s) 750, 974
Bsu15I ATCGAT 1 cut(s) 1145
BsuI GTATCC 3 cut(s) 270, 402, 636
BsuRI GGCC 6 cut(s) 71, 436, 625, 782, 1090, 1126
BsuTUI ATCGAT 1 cut(s) 1145
BtgI CCRYGG 1 cut(s) 1128
BtsCI GGATG 3 cut(s) 481, 538, 955
BtsI GCAGTG 3 cut(s) 182, 604, 1126
BtsIMutI CAGTG 6 cut(s) 182, 387, 604, 743, 841, 1126
Cac8I GCNNGC 4 cut(s) 223, 540, 769, 784
CaiI CAGNNNCTG 3 cut(s) 124, 263, 584
CfoI GCGC 1 cut(s) 742
Cfr13I GGNCC 7 cut(s) 69, 449, 624, 780, 781, 1124, 1125
ClaI ATCGAT 1 cut(s) 1145
CseI GACGC 1 cut(s) 879
Csp6I GTAC 2 cut(s) 353, 955
CviAII CATG 6 cut(s) 222, 539, 712, 874, 1084, 1102
CviQI GTAC 2 cut(s) 353, 955
DdeI CTNAG 6 cut(s) 9, 125, 425, 585, 667, 863
DpnI GATC 6 cut(s) 39, 681, 752, 976, 1144, 1148
DpnII GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
DraIII CACNNNGTG 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 1088
Eam1104I CTCTTC 2 cut(s) 684, 1128
EarI CTCTTC 2 cut(s) 684, 1128
Eco24I GRGCYC 2 cut(s) 784, 1128
Eco31I GGTCTC 2 cut(s) 227, 550
Eco47I GGWCC 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 780
EcoRII CCWGG 2 cut(s) 271, 592
EcoT22I ATGCAT 3 cut(s) 223, 544, 1107
EcoT38I GRGCYC 2 cut(s) 784, 1128
FaeI CATG 6 cut(s) 225, 542, 715, 877, 1087, 1105
FaqI GGGAC 1 cut(s) 370
FatI CATG 6 cut(s) 221, 538, 711, 873, 1083, 1101
FauI CCCGC 1 cut(s) 791
FauNDI CATATG 1 cut(s) 1107
FbaI TGATCA 1 cut(s) 679
FblI GTMKAC 1 cut(s) 1004
FokI GGATG 3 cut(s) 468, 545, 962
FriOI GRGCYC 2 cut(s) 784, 1128
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 741
GsaI CCCAGC 1 cut(s) 767
HaeIII GGCC 6 cut(s) 71, 436, 625, 782, 1090, 1126
HapII CCGG 2 cut(s) 157, 797
HgaI GACGC 1 cut(s) 879
HhaI GCGC 1 cut(s) 742
Hin1II CATG 6 cut(s) 225, 542, 715, 877, 1087, 1105
Hin6I GCGC 1 cut(s) 740
HinP1I GCGC 1 cut(s) 740
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 2 cut(s) 115, 1060
HpaII CCGG 2 cut(s) 157, 797
HphI GGTGA 3 cut(s) 47, 146, 246
Hpy166II GTNNAC 2 cut(s) 955, 1005
Hpy188I TCNGA 5 cut(s) 42, 120, 486, 555, 1012
Hpy188III TCNNGA 5 cut(s) 21, 166, 211, 683, 723
Hpy8I GTNNAC 2 cut(s) 955, 1005
HpyAV CCTTC 2 cut(s) 454, 993
HpyCH4III ACNGT 4 cut(s) 204, 293, 472, 836
HpyCH4IV ACGT 1 cut(s) 568
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 227, 788, 1045, 1048, 1051, 1054
HpyF3I CTNAG 6 cut(s) 9, 125, 425, 585, 667, 863
HpySE526I ACGT 1 cut(s) 568
Hsp92II CATG 6 cut(s) 225, 542, 715, 877, 1087, 1105
HspAI GCGC 1 cut(s) 740
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
LguI GCTCTTC 1 cut(s) 1128
LmnI GCTCC 3 cut(s) 804, 877, 1188
LweI GCATC 1 cut(s) 346
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 1 cut(s) 152
MalI GATC 6 cut(s) 39, 681, 752, 976, 1144, 1148
MboI GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
MboII GAAGA 5 cut(s) 226, 320, 701, 879, 1145
MflI RGATCY 2 cut(s) 750, 974
MhlI GDGCHC 4 cut(s) 165, 784, 1128, 1156
MlsI TGGCCA 1 cut(s) 1090
MluCI AATT 2 cut(s) 24, 137
MluNI TGGCCA 1 cut(s) 1090
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 3 cut(s) 509, 598, 927
MnlI CCTC 8 cut(s) 18, 69, 338, 679, 685, 741, 899, 989
Mox20I TGGCCA 1 cut(s) 1090
Mph1103I ATGCAT 3 cut(s) 223, 544, 1107
MscI TGGCCA 1 cut(s) 1090
MseI TTAA 2 cut(s) 959, 1175
MslI CAYNNNNRTG 1 cut(s) 1106
Msp20I TGGCCA 1 cut(s) 1090
MspA1I CMGCKG 1 cut(s) 810
MspI CCGG 2 cut(s) 157, 797
MspR9I CCNGG 3 cut(s) 158, 273, 594
Mva1269I GAATGC 2 cut(s) 223, 1030
MvaI CCWGG 2 cut(s) 273, 594
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 7 cut(s) 10, 227, 788, 1045, 1048, 1051, 1054
NciI CCSGG 1 cut(s) 158
NdeI CATATG 1 cut(s) 1107
NdeII GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
NlaIII CATG 6 cut(s) 225, 542, 715, 877, 1087, 1105
NlaIV GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1126
NmeAIII GCCGAG 2 cut(s) 97, 256
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 3 cut(s) 223, 544, 1107
NspI RCATGY 4 cut(s) 225, 542, 1087, 1105
PaeI GCATGC 2 cut(s) 225, 542
PciSI GCTCTTC 1 cut(s) 1128
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PctI GAATGC 2 cut(s) 223, 1030
PfeI GAWTC 1 cut(s) 1060
Ple19I CGATCG 1 cut(s) 1149
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp1406I AACGTT 1 cut(s) 568
Psp6I CCWGG 2 cut(s) 271, 592
PspFI CCCAGC 1 cut(s) 763
PspGI CCWGG 2 cut(s) 271, 592
PspN4I GGNNCC 6 cut(s) 70, 493, 752, 781, 782, 1126
PspOMI GGGCCC 2 cut(s) 780, 1124
PspPI GGNCC 7 cut(s) 69, 449, 624, 780, 781, 1124, 1125
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 3 cut(s) 124, 263, 584
PsuI RGATCY 2 cut(s) 750, 974
PvuI CGATCG 1 cut(s) 1149
PvuII CAGCTG 1 cut(s) 810
RsaI GTAC 2 cut(s) 354, 956
RsaNI GTAC 2 cut(s) 353, 955
RseI CAYNNNNRTG 1 cut(s) 1106
SapI GCTCTTC 1 cut(s) 1128
SaqAI TTAA 2 cut(s) 959, 1175
Sau3AI GATC 6 cut(s) 37, 679, 750, 974, 1142, 1146
Sau96I GGNCC 7 cut(s) 69, 449, 624, 780, 781, 1124, 1125
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 3 cut(s) 158, 273, 594
SduI GDGCHC 4 cut(s) 165, 784, 1128, 1156
SfaNI GCATC 1 cut(s) 346
SfcI CTRYAG 2 cut(s) 888, 915
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 1106
SmlI CTYRAG 1 cut(s) 721
SmoI CTYRAG 1 cut(s) 721
SphI GCATGC 2 cut(s) 225, 542
Sse9I AATT 2 cut(s) 24, 137
SsiI CCGC 6 cut(s) 85, 507, 622, 640, 709, 784
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 156, 271, 592
TaaI ACNGT 4 cut(s) 204, 293, 472, 836
TaiI ACGT 1 cut(s) 571
TaqI TCGA 3 cut(s) 365, 522, 1145
TasI AATT 2 cut(s) 24, 137
TatI WGTACW 1 cut(s) 954
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 1 cut(s) 1060
Tru1I TTAA 2 cut(s) 959, 1175
Tru9I TTAA 2 cut(s) 959, 1175
TscAI CASTG 6 cut(s) 189, 387, 604, 750, 841, 1126
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 187, 470
TspGWI ACGGA 1 cut(s) 869
TspRI CASTG 6 cut(s) 189, 387, 604, 750, 841, 1126
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 137
XbaI TCTAGA 1 cut(s) 20
XceI RCATGY 4 cut(s) 225, 542, 1087, 1105
XmiI GTMKAC 1 cut(s) 1004
XspI CTAG 1 cut(s) 21
Zsp2I ATGCAT 3 cut(s) 223, 544, 1107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.