Prupe.1G460300_v2.0.a1

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010904
Physical Location & Seq
Reverse (-)
38501266 .. 38503235
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G460300.1

Sequence Viewer

Length: 1254 bp
ATGCAACCTCAGCAGTTCTCTAGAATTGATTTGGGTGATTTGAAAGCGCAGATAGTGAAGAGGATTGGGGCCGAGAGGTCAAAGCGGTACTTTAATTACTTGAATAGGTTGTTGAGTCAGAAGCTGAGCAAGAAGGAATTTGACAAGTTGTGTCACCGGGTGCTAGGAAGTGAGAATTTGCCACTGCACAATCATTTTATACGGTCAATCTTGAAGAATGCATGCCAAGCCAAGACCCCACCACCAATACATTCATCAGTTCCTGCAAAACCTGGGATACAAGCTGCAAACAGTTCTCCAAGTAGAGAAGACGGGCAGGAGCAAAGTGGGACCCTCTTTCCAAATCAAAATCAAAATGTACCCGTTTGGCAGAATGGGGTTTTGCCAGTGTCCCCACGGAAGGGTAGGTCCGGGATACGTGATCGGAAGCTAAGGGATAGACCAAGCCCACTTGGACCAAATGGGAAGGTCGATAGTGTGTCACATCAATCCATGGGTTCAGAGGACAATGGCAGTAAGGTTATTGTGGAAAATGGGGATGTGCATCCATATGATTATCAGAGACCAACGCAGCATCTTCAAACAGTTGCTGAGCTACCTGAGAGTGAAAGAGATGGTGCAGTTCGGCAACCCATAGAAAAACCACGGATACACAGCAAAGACCAGGCCAACTTAGCTGTTATTGAAGATGAGGAAGAGGTGGAACAATCAAACCGCTTAAGTTTCTCAAGAAGTCCTCTACTTGCGCCACTTGGGATCCCATTCTACCCAGCCAGCATAGGTGGGGCCCGCAAAGCTTTGCCCGTGGGTAGCAGCTGTGATTTCGTTAGCTATTATGACAATGGGGGATTGTCAGATTCGGAGACGCTTAGAAAACGAATGGAGCAGATTGCTGCAGCACAGGGTCTTGGAGGTGTTTCTACAGAATGTGCCAATATGCTGAATAATGTGTTGGATGTGTACTTAAAGCGATTGATTAGGTCCTGTGTTGAGTTGGTGGGAGCAAGGTCTACATCAGAGCCAAAAAAGAGTGCTGCACCAAAGCAGCAGATTCAAGGAAAGATCATCAATGGCATGTGGCCAAGCAATCACTTGCATATGCAGAGTGGCAGTGGCCCCGTGGAAGAGCAAAGACCACGGTGTTCAATATCTTTGCTTGATTTTAAGGTTGCAATGGAGCTAAATCCACAGCAACTTGGAGAAGACTGGTCATTGCTGCTGGAGAAGATTTGTATGCAAGCATTCGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

418

Amino Acids

46.25

Weight (kDa)

8.84

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1010
AciI CCGC 3 cut(s) 85, 715, 790
AclWI GGATC 2 cut(s) 751, 764
AcoI YGGCCR 1 cut(s) 1079
AcsI RAATTY 2 cut(s) 137, 175
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 3 cut(s) 89, 360, 962
AfiI CCNNNNNNNGG 2 cut(s) 400, 401
AflII CTTAAG 1 cut(s) 718
AgsI TTSAA 7 cut(s) 43, 103, 214, 581, 686, 1055, 1146
AjnI CCWGG 2 cut(s) 271, 663
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AluBI AGCT 9 cut(s) 124, 284, 430, 595, 677, 797, 816, 831, 1180
AluI AGCT 9 cut(s) 124, 284, 430, 595, 677, 797, 816, 831, 1180
Alw26I GTCTC 2 cut(s) 556, 857
AlwI GGATC 2 cut(s) 751, 764
AlwNI CAGNNNCTG 3 cut(s) 124, 263, 590
AoxI GGCC 5 cut(s) 69, 666, 786, 1079, 1114
ApaI GGGCCC 1 cut(s) 790
ApeKI GCWGC 8 cut(s) 284, 571, 813, 893, 896, 1034, 1045, 1216
ApoI RAATTY 2 cut(s) 137, 175
AspLEI GCGC 2 cut(s) 49, 748
AspS9I GGNCC 8 cut(s) 69, 330, 408, 455, 786, 787, 981, 1115
AsuC2I CCSGG 2 cut(s) 158, 412
AsuHPI GGTGA 2 cut(s) 47, 146
AvaII GGWCC 4 cut(s) 330, 408, 455, 981
BaeGI GKGCMC 1 cut(s) 790
BalI TGGCCA 1 cut(s) 1081
BamHI GGATCC 1 cut(s) 756
BanII GRGCYC 1 cut(s) 790
BbsI GAAGAC 2 cut(s) 315, 1209
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 8 cut(s) 271, 583, 825, 880, 908, 1021, 1057, 1203
BccI CCATC 1 cut(s) 608
BciT130I CCWGG 2 cut(s) 273, 665
BciVI GTATCC 3 cut(s) 270, 408, 642
BcnI CCSGG 2 cut(s) 158, 412
BcoDI GTCTC 2 cut(s) 556, 857
BfaI CTAG 2 cut(s) 21, 164
BfmI CTRYAG 2 cut(s) 894, 921
BfrI CTTAAG 1 cut(s) 718
BfuI GTATCC 3 cut(s) 270, 408, 642
BisI GCNGC 8 cut(s) 285, 572, 814, 894, 897, 1035, 1046, 1217
BlpI GCTNAGC 2 cut(s) 125, 591
BlsI GCNGC 8 cut(s) 286, 573, 815, 895, 898, 1036, 1047, 1218
Bme1390I CCNGG 4 cut(s) 158, 273, 412, 665
Bme18I GGWCC 4 cut(s) 330, 408, 455, 981
BmgT120I GGNCC 8 cut(s) 69, 330, 408, 455, 786, 787, 981, 1115
BmiI GGNNCC 7 cut(s) 70, 331, 332, 758, 787, 788, 1117
BmrFI CCNGG 4 cut(s) 158, 273, 412, 665
BmsI GCATC 2 cut(s) 553, 583
BpiI GAAGAC 2 cut(s) 315, 1209
BpmI CTGGAG 1 cut(s) 1241
Bpu10I CCTNAGC 2 cut(s) 9, 431
Bpu1102I GCTNAGC 2 cut(s) 125, 591
BpuEI CTTGAG 1 cut(s) 712
BpuMI CCSGG 2 cut(s) 158, 412
BsaAI YACGTR 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 543
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 7 cut(s) 272, 395, 492, 644, 804, 1119, 1136
Bsc4I CCNNNNNNNGG 2 cut(s) 400, 401
Bse1I ACTGG 2 cut(s) 386, 1211
Bse3DI GCAATG 2 cut(s) 1179, 1211
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 2 cut(s) 273, 665
BseDI CCNNGG 7 cut(s) 272, 395, 492, 644, 804, 1119, 1136
BseGI GGATG 3 cut(s) 544, 544, 961
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 2 cut(s) 400, 401
BseMI GCAATG 2 cut(s) 1179, 1211
BseMII CTCAG 4 cut(s) 23, 116, 582, 591
BseNI ACTGG 2 cut(s) 386, 1211
BseSI GKGCMC 1 cut(s) 790
BseXI GCAGC 8 cut(s) 271, 583, 825, 880, 908, 1021, 1057, 1203
BseYI CCCAGC 1 cut(s) 769
BsgI GTGCAG 3 cut(s) 170, 639, 1020
BshFI GGCC 5 cut(s) 71, 668, 788, 1081, 1116
BsiSI CCGG 2 cut(s) 157, 411
BslFI GGGAC 2 cut(s) 343, 376
BslI CCNNNNNNNGG 2 cut(s) 400, 401
BsmAI GTCTC 2 cut(s) 556, 857
BsmBI CGTCTC 1 cut(s) 857
BsmFI GGGAC 2 cut(s) 343, 376
BsmI GAATGC 2 cut(s) 223, 1241
BsnI GGCC 5 cut(s) 71, 668, 788, 1081, 1116
Bso31I GGTCTC 1 cut(s) 556
Bsp120I GGGCCC 1 cut(s) 786
Bsp1286I GDGCHC 1 cut(s) 790
Bsp143I GATC 3 cut(s) 421, 756, 1062
Bsp1720I GCTNAGC 2 cut(s) 125, 591
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 3 cut(s) 85, 715, 790
BspANI GGCC 5 cut(s) 71, 668, 788, 1081, 1116
BspCNI CTCAG 4 cut(s) 22, 117, 583, 592
BspLI GGNNCC 7 cut(s) 70, 331, 332, 758, 787, 788, 1117
BspMAI CTGCAG 1 cut(s) 898
BspPI GGATC 2 cut(s) 751, 764
BspQI GCTCTTC 1 cut(s) 1119
BspTI CTTAAG 1 cut(s) 718
BspTNI GGTCTC 1 cut(s) 556
BsrDI GCAATG 2 cut(s) 1179, 1211
BsrI ACTGG 2 cut(s) 386, 1211
BssECI CCNNGG 7 cut(s) 272, 395, 492, 644, 804, 1119, 1136
BssMI GATC 3 cut(s) 421, 756, 1062
BssT1I CCWWGG 1 cut(s) 492
Bst2UI CCWGG 2 cut(s) 273, 665
Bst4CI ACNGT 4 cut(s) 204, 293, 586, 1140
Bst6I CTCTTC 3 cut(s) 53, 690, 1119
BstAFI CTTAAG 1 cut(s) 718
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 4 cut(s) 223, 775, 790, 1239
BstDEI CTNAG 7 cut(s) 9, 125, 431, 591, 600, 673, 869
BstDSI CCRYGG 6 cut(s) 395, 492, 644, 804, 1119, 1136
BstF5I GGATG 3 cut(s) 544, 544, 961
BstHHI GCGC 2 cut(s) 49, 748
BstKTI GATC 3 cut(s) 424, 759, 1065
BstMAI GTCTC 2 cut(s) 556, 857
BstMBI GATC 3 cut(s) 421, 756, 1062
BstMWI GCNNNNNNNGC 4 cut(s) 10, 227, 674, 794
BstNI CCWGG 2 cut(s) 273, 665
BstNSI RCATGY 2 cut(s) 225, 1078
BstSCI CCNGG 4 cut(s) 156, 271, 410, 663
BstSFI CTRYAG 2 cut(s) 894, 921
BstSLI GKGCMC 1 cut(s) 790
BstV1I GCAGC 8 cut(s) 271, 583, 825, 880, 908, 1021, 1057, 1203
BstV2I GAAGAC 2 cut(s) 315, 1209
BstX2I RGATCY 1 cut(s) 756
BstYI RGATCY 1 cut(s) 756
BsuI GTATCC 3 cut(s) 270, 408, 642
BsuRI GGCC 5 cut(s) 71, 668, 788, 1081, 1116
BtgI CCRYGG 6 cut(s) 395, 492, 644, 804, 1119, 1136
BtsCI GGATG 3 cut(s) 544, 544, 961
BtsI GCAGTG 2 cut(s) 182, 1117
BtsIMutI CAGTG 3 cut(s) 182, 393, 1117
Cac8I GCNNGC 4 cut(s) 223, 775, 790, 1239
CaiI CAGNNNCTG 3 cut(s) 124, 263, 590
CfoI GCGC 2 cut(s) 49, 748
Cfr13I GGNCC 8 cut(s) 69, 330, 408, 455, 786, 787, 981, 1115
CseI GACGC 1 cut(s) 874
Csp6I GTAC 3 cut(s) 88, 359, 961
CviAII CATG 3 cut(s) 222, 493, 1075
CviQI GTAC 3 cut(s) 88, 359, 961
DdeI CTNAG 7 cut(s) 9, 125, 431, 591, 600, 673, 869
DpnI GATC 3 cut(s) 423, 758, 1064
DpnII GATC 3 cut(s) 421, 756, 1062
DraIII CACNNNGTG 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 1079
Eam1104I CTCTTC 3 cut(s) 53, 690, 1119
EarI CTCTTC 3 cut(s) 53, 690, 1119
Eco130I CCWWGG 1 cut(s) 492
Eco24I GRGCYC 1 cut(s) 790
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 4 cut(s) 330, 408, 455, 981
EcoO109I RGGNCCY 3 cut(s) 330, 786, 981
EcoRII CCWGG 2 cut(s) 271, 663
EcoT14I CCWWGG 1 cut(s) 492
EcoT22I ATGCAT 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 790
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 1 cut(s) 857
FaeI CATG 3 cut(s) 225, 496, 1078
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 2 cut(s) 343, 376
FatI CATG 3 cut(s) 221, 492, 1074
FauI CCCGC 1 cut(s) 797
FauNDI CATATG 2 cut(s) 550, 1098
FblI GTMKAC 1 cut(s) 1010
Fnu4HI GCNGC 8 cut(s) 285, 572, 814, 894, 897, 1035, 1046, 1217
FokI GGATG 3 cut(s) 531, 551, 968
FriOI GRGCYC 1 cut(s) 790
Fsp4HI GCNGC 8 cut(s) 285, 572, 814, 894, 897, 1035, 1046, 1217
FspBI CTAG 2 cut(s) 21, 164
GlaI GCGC 2 cut(s) 48, 747
GluI GCNGC 8 cut(s) 285, 572, 814, 894, 897, 1035, 1046, 1217
GsaI CCCAGC 1 cut(s) 773
GsuI CTGGAG 1 cut(s) 1241
HaeIII GGCC 5 cut(s) 71, 668, 788, 1081, 1116
HapII CCGG 2 cut(s) 157, 411
HgaI GACGC 1 cut(s) 874
HhaI GCGC 2 cut(s) 49, 748
Hin1II CATG 3 cut(s) 225, 496, 1078
Hin6I GCGC 2 cut(s) 47, 746
HinP1I GCGC 2 cut(s) 47, 746
HindIII AAGCTT 1 cut(s) 795
HinfI GANTC 3 cut(s) 115, 857, 1051
HpaII CCGG 2 cut(s) 157, 411
HphI GGTGA 2 cut(s) 47, 146
Hpy166II GTNNAC 2 cut(s) 961, 1011
Hpy188I TCNGA 7 cut(s) 120, 426, 502, 561, 856, 862, 1018
Hpy188III TCNNGA 3 cut(s) 21, 211, 729
Hpy8I GTNNAC 2 cut(s) 961, 1011
HpyAV CCTTC 3 cut(s) 127, 394, 460
HpyCH4III ACNGT 4 cut(s) 204, 293, 586, 1140
HpyCH4IV ACGT 1 cut(s) 418
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 227, 674, 794
HpyF3I CTNAG 7 cut(s) 9, 125, 431, 591, 600, 673, 869
HpySE526I ACGT 1 cut(s) 418
Hsp92II CATG 3 cut(s) 225, 496, 1078
HspAI GCGC 2 cut(s) 47, 746
KflI GGGWCCC 1 cut(s) 330
Kzo9I GATC 3 cut(s) 421, 756, 1062
LguI GCTCTTC 1 cut(s) 1119
LmnI GCTCC 4 cut(s) 319, 883, 1001, 1177
Lsp1109I GCAGC 8 cut(s) 271, 583, 825, 880, 908, 1021, 1057, 1203
LweI GCATC 2 cut(s) 553, 583
MaeI CTAG 2 cut(s) 21, 164
MaeII ACGT 1 cut(s) 418
MaeIII GTNAC 2 cut(s) 152, 480
MalI GATC 3 cut(s) 423, 758, 1064
MboI GATC 3 cut(s) 421, 756, 1062
MboII GAAGA 9 cut(s) 70, 226, 320, 569, 698, 707, 1136, 1214, 1237
MflI RGATCY 1 cut(s) 756
MhlI GDGCHC 1 cut(s) 790
MlsI TGGCCA 1 cut(s) 1081
MluCI AATT 4 cut(s) 24, 94, 137, 175
MluNI TGGCCA 1 cut(s) 1081
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 933
Mox20I TGGCCA 1 cut(s) 1081
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 1081
MseI TTAA 4 cut(s) 93, 719, 965, 1164
MslI CAYNNNNRTG 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 1081
MspA1I CMGCKG 1 cut(s) 816
MspCI CTTAAG 1 cut(s) 718
MspI CCGG 2 cut(s) 157, 411
MspR9I CCNGG 4 cut(s) 158, 273, 412, 665
Mva1269I GAATGC 2 cut(s) 223, 1241
MvaI CCWGG 2 cut(s) 273, 665
MwoI GCNNNNNNNGC 4 cut(s) 10, 227, 674, 794
NciI CCSGG 2 cut(s) 158, 412
NcoI CCATGG 1 cut(s) 492
NdeI CATATG 2 cut(s) 550, 1098
NdeII GATC 3 cut(s) 421, 756, 1062
NlaIII CATG 3 cut(s) 225, 496, 1078
NlaIV GGNNCC 7 cut(s) 70, 331, 332, 758, 787, 788, 1117
NmeAIII GCCGAG 1 cut(s) 97
NmuCI GTSAC 2 cut(s) 152, 480
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 2 cut(s) 225, 1078
PaeI GCATGC 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 1119
PctI GAATGC 2 cut(s) 223, 1241
PfeI GAWTC 2 cut(s) 857, 1051
PfoI TCCNGGA 1 cut(s) 410
PkrI GCNGC 8 cut(s) 286, 573, 815, 895, 898, 1036, 1047, 1218
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 419
PpuMI RGGWCCY 2 cut(s) 330, 981
Psp5II RGGWCCY 2 cut(s) 330, 981
Psp6I CCWGG 2 cut(s) 271, 663
PspFI CCCAGC 1 cut(s) 769
PspGI CCWGG 2 cut(s) 271, 663
PspN4I GGNNCC 7 cut(s) 70, 331, 332, 758, 787, 788, 1117
PspOMI GGGCCC 1 cut(s) 786
PspPI GGNCC 8 cut(s) 69, 330, 408, 455, 786, 787, 981, 1115
PspPPI RGGWCCY 2 cut(s) 330, 981
PstI CTGCAG 1 cut(s) 898
PstNI CAGNNNCTG 3 cut(s) 124, 263, 590
PsuI RGATCY 1 cut(s) 756
PvuII CAGCTG 1 cut(s) 816
RsaI GTAC 3 cut(s) 89, 360, 962
RsaNI GTAC 3 cut(s) 88, 359, 961
RseI CAYNNNNRTG 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 1119
SaqAI TTAA 4 cut(s) 93, 719, 965, 1164
SatI GCNGC 8 cut(s) 285, 572, 814, 894, 897, 1035, 1046, 1217
Sau3AI GATC 3 cut(s) 421, 756, 1062
Sau96I GGNCC 8 cut(s) 69, 330, 408, 455, 786, 787, 981, 1115
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 4 cut(s) 158, 273, 412, 665
SduI GDGCHC 1 cut(s) 790
SfaNI GCATC 2 cut(s) 553, 583
SfcI CTRYAG 2 cut(s) 894, 921
SinI GGWCC 4 cut(s) 330, 408, 455, 981
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 718, 727
SmoI CTYRAG 2 cut(s) 718, 727
SphI GCATGC 1 cut(s) 225
Sse9I AATT 4 cut(s) 24, 94, 137, 175
SsiI CCGC 3 cut(s) 85, 715, 790
SspMI CTAG 2 cut(s) 21, 164
StyD4I CCNGG 4 cut(s) 156, 271, 410, 663
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 4 cut(s) 204, 293, 586, 1140
TaiI ACGT 1 cut(s) 421
TaqI TCGA 2 cut(s) 471, 1245
TasI AATT 4 cut(s) 24, 94, 137, 175
TatI WGTACW 1 cut(s) 960
TfiI GAWTC 2 cut(s) 857, 1051
Tru1I TTAA 4 cut(s) 93, 719, 965, 1164
Tru9I TTAA 4 cut(s) 93, 719, 965, 1164
TscAI CASTG 3 cut(s) 189, 393, 1117
TseFI GTSAC 2 cut(s) 152, 480
TseI GCWGC 8 cut(s) 284, 571, 813, 893, 896, 1034, 1045, 1216
Tsp45I GTSAC 2 cut(s) 152, 480
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 2 cut(s) 412, 661
TspRI CASTG 3 cut(s) 189, 393, 1117
Vha464I CTTAAG 1 cut(s) 718
VpaK11BI GGWCC 4 cut(s) 330, 408, 455, 981
XapI RAATTY 2 cut(s) 137, 175
XbaI TCTAGA 1 cut(s) 20
XceI RCATGY 2 cut(s) 225, 1078
XmiI GTMKAC 1 cut(s) 1010
XspI CTAG 2 cut(s) 21, 164
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.