MD08G1128500.v1.1

Transcriptional regulator of RNA polII, SAGA, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0010904
Physical Location & Seq
Reverse (-)
12050118 .. 12052893
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1128500.v1.1.491

Sequence Viewer

Length: 1242 bp
ATGCAACCTCAGCAGTTCTCTAGAATTGATTTGGGTGATCTGAAAGCACAGATAGTGAAGAGAATTGGGGCCGATAGGTCAAAGCGGTATTTTTGTTACTTGAATAGGTTGTTGAGTCAGAAGCTGAGCAAGAAAGAATTTGACAAGTTGTGTCACCGGGTGCTCGGGAGTGAGAACTTGCCACTGCATAATCATTTTATACGGTCAGTCTTGAAGAATGCATGCCACGCAAAGACCCCACCACCAGTCTTTTCATCGGTTCCTGCAAAACCTGGGATACAAGCTGCAAACAGTTCTCCAAGTAGAGAAGATGGGCAGGAACAAAGCCTCTTTCCGCATCAAAATCAAAATGTACCTGGTTGGTCGAATGGGGTATTGCCGGTGTCCCCACGAAAGGGTAGGTCTGGGATACGCGAACGGAAGCTAAGGGATAGGCCAAGCCCACTTGGACCAAATGGGAAGGTAGATAGTGCATCACATCATTCCACGGGTTTAGAGGATAATGGTGGTAAGGTTATTGTGGAAAACGGGGATGTGCATCCATTTGATTATCAGAGACCAATGCGACATCTTCAACCTGTTGCTGAGCTACCTGAGAGTGAAAGAGATGGTGCAGTTGGGGAAAGACCACGGATACACAGCAAAGACCAGGCTGACTTAGCTGTTATTGATCACGAGGAAGAGGGAGAACAATCAAACTGCTTGAGTTTCCCAAGAAGTCCTCTACTTGCGCCACTGGGGATCCCGCTCTACCCAGCCAGCGTAGGTGGGGCCCACAAAGCTTTTCCAGTTGGTAGCAGCTGTGATATTGTTAGCTATTATGACAGTGGGGGATTGTCCGATACGGAAACACTTAGAAAACGCATGGAGCAGATTGCTGCAGCACAGGGTCTTGGTGGAGTTTCTACAGAATGTGCCAATATGCTGAATAATGTGTTGGATATATACTTAAAGCGATTGATTAGATCCTGCGTTGAGTTGGTGGGAGCAAGGTCTACACCAGAGCCAAAAAAGAATGCTGCACCAAAGCAGCAGCAGATTCAAGGAAAGATTATCAATGGCATGTGGCCAAGCAATCACATGCATATGCAGAGCAGCAGTGGGCCTGTGGAAGAGCAAAGACCTCAGTGTTCAATATCTTTCCTTGATTTTAAGGTTGCAATGGAGCTAAATCCACAGCAACTTGGAGAGGATTGGCCGTTGCTGCTGGAGAAGATTTGTATGCAAGCATTCGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAGA-Tad1

Protein Analysis

414

Amino Acids

45.67

Weight (kDa)

8.3

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAGA-Tad1 PF12767 4 - 328 1.3e-64 Transcriptional regulator of RNA polII, SAGA, subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010904)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24530 AT2G24530 AT4G31440
fragaria_vesca FvH4_2g36780
malus_domestica MD08G1128500.v1.1 MD15G1108000.v1.1
prunus_persica Prupe.1G460300_v2.0.a1
pyrus_communis pycom08g10740 pycom15g09870
rosa_chinensis RchiOBHm_Chr6g0304961
rosa_laevigata RLG00000010932
rosa_multiflora Rmu_co8321821.1_g000001 Rmu_co8368149.1_g000001
rosa_roxburghii Rroxscaffold_7G00163310
rosa_rugosa Rorug06G0336400
rosa_samantha Rh6AG447800 Rh6BG453200 Rh6CG461400 Rh6DG448400
rosa_wichuraiana Rw6G039000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 748
AccI GTMKAC 1 cut(s) 995
AccII CGCG 1 cut(s) 414
AciI CCGC 3 cut(s) 85, 335, 746
AclWI GGATC 3 cut(s) 736, 749, 960
AcoI YGGCCR 2 cut(s) 1067, 1196
AcsI RAATTY 1 cut(s) 137
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 1 cut(s) 354
AfiI CCNNNNNNNGG 2 cut(s) 394, 395
AgsI TTSAA 5 cut(s) 103, 214, 575, 1043, 1134
AjnI CCWGG 3 cut(s) 271, 355, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 920, 952
AluBI AGCT 9 cut(s) 124, 284, 424, 589, 662, 782, 801, 816, 1168
AluI AGCT 9 cut(s) 124, 284, 424, 589, 662, 782, 801, 816, 1168
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 550
AlwI GGATC 3 cut(s) 736, 749, 960
AlwNI CAGNNNCTG 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 6 cut(s) 69, 434, 771, 1067, 1103, 1196
ApaI GGGCCC 1 cut(s) 775
ApeKI GCWGC 9 cut(s) 284, 798, 878, 881, 1019, 1030, 1033, 1095, 1204
ApoI RAATTY 1 cut(s) 137
AspLEI GCGC 1 cut(s) 733
AspS9I GGNCC 5 cut(s) 69, 449, 771, 772, 1103
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 2 cut(s) 47, 146
AvaI CYCGRG 1 cut(s) 164
AvaII GGWCC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 775
BalI TGGCCA 1 cut(s) 1069
BamHI GGATCC 1 cut(s) 741
BanII GRGCYC 1 cut(s) 775
BauI CACGAG 1 cut(s) 674
Bbv12I GWGCWC 1 cut(s) 165
BbvCI CCTCAGC 1 cut(s) 9
BbvI GCAGC 9 cut(s) 271, 810, 865, 893, 1006, 1042, 1045, 1107, 1191
BccI CCATC 2 cut(s) 305, 602
BceAI ACGGC 1 cut(s) 1183
BciT130I CCWGG 3 cut(s) 273, 357, 650
BciVI GTATCC 3 cut(s) 270, 402, 627
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 550
BfaI CTAG 1 cut(s) 21
BfmI CTRYAG 2 cut(s) 879, 906
BfuI GTATCC 3 cut(s) 270, 402, 627
BisI GCNGC 9 cut(s) 285, 799, 879, 882, 1020, 1031, 1034, 1096, 1205
BlpI GCTNAGC 2 cut(s) 125, 585
BlsI GCNGC 9 cut(s) 286, 800, 880, 883, 1021, 1032, 1035, 1097, 1206
Bme1390I CCNGG 4 cut(s) 158, 273, 357, 650
Bme18I GGWCC 1 cut(s) 449
BmeT110I CYCGRG 1 cut(s) 164
BmgT120I GGNCC 5 cut(s) 69, 449, 771, 772, 1103
BmiI GGNNCC 5 cut(s) 70, 261, 743, 772, 773
BmrFI CCNGG 4 cut(s) 158, 273, 357, 650
BmrI ACTGGG 1 cut(s) 746
BmsI GCATC 3 cut(s) 346, 482, 547
BmuI ACTGGG 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 1229
Bpu10I CCTNAGC 2 cut(s) 9, 425
Bpu1102I GCTNAGC 2 cut(s) 125, 585
BpuEI CTTGAG 1 cut(s) 724
BpuMI CCSGG 1 cut(s) 158
BsaBI GATNNNNATC 1 cut(s) 537
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 3 cut(s) 272, 486, 629
Bsc4I CCNNNNNNNGG 2 cut(s) 394, 395
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 3 cut(s) 245, 741, 788
Bse3DI GCAATG 1 cut(s) 1167
Bse8I GATNNNNATC 1 cut(s) 537
BseBI CCWGG 3 cut(s) 273, 357, 650
BseDI CCNNGG 3 cut(s) 272, 486, 629
BseGI GGATG 2 cut(s) 538, 538
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 2 cut(s) 394, 395
BseMI GCAATG 1 cut(s) 1167
BseMII CTCAG 5 cut(s) 23, 116, 576, 585, 1139
BseNI ACTGG 3 cut(s) 245, 741, 788
BseSI GKGCMC 1 cut(s) 775
BseXI GCAGC 9 cut(s) 271, 810, 865, 893, 1006, 1042, 1045, 1107, 1191
BseYI CCCAGC 1 cut(s) 754
BsgI GTGCAG 2 cut(s) 633, 1005
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 6 cut(s) 71, 436, 773, 1069, 1105, 1198
BsiHKAI GWGCWC 1 cut(s) 165
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 2 cut(s) 157, 380
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 394, 395
BsmAI GTCTC 1 cut(s) 550
BsmFI GGGAC 1 cut(s) 370
BsmI GAATGC 3 cut(s) 223, 1021, 1229
BsnI GGCC 6 cut(s) 71, 436, 773, 1069, 1105, 1198
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 1 cut(s) 164
Bsp120I GGGCCC 1 cut(s) 771
Bsp1286I GDGCHC 2 cut(s) 165, 775
Bsp143I GATC 4 cut(s) 37, 670, 741, 965
Bsp1720I GCTNAGC 2 cut(s) 125, 585
BspACI CCGC 3 cut(s) 85, 335, 746
BspANI GGCC 6 cut(s) 71, 436, 773, 1069, 1105, 1198
BspCNI CTCAG 5 cut(s) 22, 117, 577, 586, 1138
BspFNI CGCG 1 cut(s) 414
BspLI GGNNCC 5 cut(s) 70, 261, 743, 772, 773
BspMAI CTGCAG 1 cut(s) 883
BspPI GGATC 3 cut(s) 736, 749, 960
BspQI GCTCTTC 1 cut(s) 1107
BspTNI GGTCTC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 1167
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 3 cut(s) 245, 741, 788
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 3 cut(s) 272, 486, 629
BssMI GATC 4 cut(s) 37, 670, 741, 965
BssSI CACGAG 1 cut(s) 674
Bst2BI CACGAG 1 cut(s) 674
Bst2UI CCWGG 3 cut(s) 273, 357, 650
Bst4CI ACNGT 3 cut(s) 204, 293, 827
Bst6I CTCTTC 3 cut(s) 53, 675, 1107
BstC8I GCNNGC 3 cut(s) 223, 760, 1227
BstDEI CTNAG 8 cut(s) 9, 125, 425, 585, 594, 658, 854, 1125
BstDSI CCRYGG 2 cut(s) 486, 629
BstF5I GGATG 2 cut(s) 538, 538
BstFNI CGCG 1 cut(s) 414
BstHHI GCGC 1 cut(s) 733
BstKTI GATC 4 cut(s) 40, 673, 744, 968
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 4 cut(s) 37, 670, 741, 965
BstMWI GCNNNNNNNGC 5 cut(s) 10, 227, 659, 779, 1204
BstNI CCWGG 3 cut(s) 273, 357, 650
BstNSI RCATGY 3 cut(s) 225, 1066, 1084
BstSCI CCNGG 4 cut(s) 156, 271, 355, 648
BstSFI CTRYAG 2 cut(s) 879, 906
BstSLI GKGCMC 1 cut(s) 775
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 9 cut(s) 271, 810, 865, 893, 1006, 1042, 1045, 1107, 1191
BstX2I RGATCY 2 cut(s) 741, 965
BstYI RGATCY 2 cut(s) 741, 965
BsuI GTATCC 3 cut(s) 270, 402, 627
BsuRI GGCC 6 cut(s) 71, 436, 773, 1069, 1105, 1198
BtgI CCRYGG 2 cut(s) 486, 629
BtsCI GGATG 2 cut(s) 538, 538
BtsI GCAGTG 2 cut(s) 182, 1105
BtsIMutI CAGTG 5 cut(s) 182, 734, 832, 1105, 1133
Cac8I GCNNGC 3 cut(s) 223, 760, 1227
CaiI CAGNNNCTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 733
Cfr10I RCCGGY 1 cut(s) 379
Cfr13I GGNCC 5 cut(s) 69, 449, 771, 772, 1103
CsiI ACCWGGT 1 cut(s) 355
Csp6I GTAC 1 cut(s) 353
CviAII CATG 4 cut(s) 222, 865, 1063, 1081
CviQI GTAC 1 cut(s) 353
DdeI CTNAG 8 cut(s) 9, 125, 425, 585, 594, 658, 854, 1125
DpnI GATC 4 cut(s) 39, 672, 743, 967
DpnII GATC 4 cut(s) 37, 670, 741, 965
DraIII CACNNNGTG 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 1067, 1196
Eam1104I CTCTTC 3 cut(s) 53, 675, 1107
EarI CTCTTC 3 cut(s) 53, 675, 1107
Eco24I GRGCYC 1 cut(s) 775
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 164
EcoO109I RGGNCCY 1 cut(s) 771
EcoRII CCWGG 3 cut(s) 271, 355, 648
EcoT22I ATGCAT 2 cut(s) 223, 1086
EcoT38I GRGCYC 1 cut(s) 775
FaeI CATG 4 cut(s) 225, 868, 1066, 1084
FaqI GGGAC 1 cut(s) 370
FatI CATG 4 cut(s) 221, 864, 1062, 1080
FauI CCCGC 1 cut(s) 753
FauNDI CATATG 1 cut(s) 1086
FbaI TGATCA 1 cut(s) 670
FblI GTMKAC 1 cut(s) 995
Fnu4HI GCNGC 9 cut(s) 285, 799, 879, 882, 1020, 1031, 1034, 1096, 1205
FokI GGATG 2 cut(s) 525, 545
FriOI GRGCYC 1 cut(s) 775
Fsp4HI GCNGC 9 cut(s) 285, 799, 879, 882, 1020, 1031, 1034, 1096, 1205
FspBI CTAG 1 cut(s) 21
GlaI GCGC 1 cut(s) 732
GluI GCNGC 9 cut(s) 285, 799, 879, 882, 1020, 1031, 1034, 1096, 1205
GsaI CCCAGC 1 cut(s) 758
GsuI CTGGAG 1 cut(s) 1229
HaeIII GGCC 6 cut(s) 71, 436, 773, 1069, 1105, 1198
HapII CCGG 2 cut(s) 157, 380
HhaI GCGC 1 cut(s) 733
Hin1II CATG 4 cut(s) 225, 868, 1066, 1084
Hin6I GCGC 1 cut(s) 731
HinP1I GCGC 1 cut(s) 731
HindIII AAGCTT 1 cut(s) 780
HinfI GANTC 2 cut(s) 115, 1039
HpaII CCGG 2 cut(s) 157, 380
HphI GGTGA 2 cut(s) 47, 146
Hpy166II GTNNAC 1 cut(s) 996
Hpy188I TCNGA 4 cut(s) 42, 120, 555, 841
Hpy188III TCNNGA 4 cut(s) 21, 166, 211, 674
Hpy8I GTNNAC 1 cut(s) 996
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 3 cut(s) 204, 293, 827
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 227, 659, 779, 1204
HpyF3I CTNAG 8 cut(s) 9, 125, 425, 585, 594, 658, 854, 1125
Hsp92II CATG 4 cut(s) 225, 868, 1066, 1084
HspAI GCGC 1 cut(s) 731
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 4 cut(s) 37, 670, 741, 965
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 3 cut(s) 868, 986, 1165
Lsp1109I GCAGC 9 cut(s) 271, 810, 865, 893, 1006, 1042, 1045, 1107, 1191
LweI GCATC 3 cut(s) 346, 482, 547
MabI ACCWGGT 1 cut(s) 355
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 2 cut(s) 95, 152
MalI GATC 4 cut(s) 39, 672, 743, 967
MbiI CCGCTC 1 cut(s) 748
MboI GATC 4 cut(s) 37, 670, 741, 965
MboII GAAGA 7 cut(s) 70, 226, 320, 563, 692, 1124, 1225
MflI RGATCY 2 cut(s) 741, 965
MhlI GDGCHC 2 cut(s) 165, 775
MlsI TGGCCA 1 cut(s) 1069
MluCI AATT 3 cut(s) 24, 63, 137
MluNI TGGCCA 1 cut(s) 1069
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 918
MnlI CCTC 9 cut(s) 18, 338, 490, 670, 676, 732, 1134, 1183, 1228
Mox20I TGGCCA 1 cut(s) 1069
Mph1103I ATGCAT 2 cut(s) 223, 1086
MscI TGGCCA 1 cut(s) 1069
MseI TTAA 2 cut(s) 950, 1152
MslI CAYNNNNRTG 1 cut(s) 1085
Msp20I TGGCCA 1 cut(s) 1069
MspA1I CMGCKG 1 cut(s) 801
MspI CCGG 2 cut(s) 157, 380
MspR9I CCNGG 4 cut(s) 158, 273, 357, 650
Mva1269I GAATGC 3 cut(s) 223, 1021, 1229
MvaI CCWGG 3 cut(s) 273, 357, 650
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 5 cut(s) 10, 227, 659, 779, 1204
NciI CCSGG 1 cut(s) 158
NdeI CATATG 1 cut(s) 1086
NdeII GATC 4 cut(s) 37, 670, 741, 965
NlaIII CATG 4 cut(s) 225, 868, 1066, 1084
NlaIV GGNNCC 5 cut(s) 70, 261, 743, 772, 773
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 2 cut(s) 223, 1086
NspI RCATGY 3 cut(s) 225, 1066, 1084
PaeI GCATGC 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 1107
PctI GAATGC 3 cut(s) 223, 1021, 1229
PfeI GAWTC 1 cut(s) 1039
PkrI GCNGC 9 cut(s) 286, 800, 880, 883, 1021, 1032, 1035, 1097, 1206
PleI GAGTC 1 cut(s) 123
PpsI GAGTC 1 cut(s) 123
Psp6I CCWGG 3 cut(s) 271, 355, 648
PspFI CCCAGC 1 cut(s) 754
PspGI CCWGG 3 cut(s) 271, 355, 648
PspN4I GGNNCC 5 cut(s) 70, 261, 743, 772, 773
PspOMI GGGCCC 1 cut(s) 771
PspPI GGNCC 5 cut(s) 69, 449, 771, 772, 1103
PstI CTGCAG 1 cut(s) 883
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 741, 965
PvuII CAGCTG 1 cut(s) 801
RsaI GTAC 1 cut(s) 354
RsaNI GTAC 1 cut(s) 353
RseI CAYNNNNRTG 1 cut(s) 1085
SapI GCTCTTC 1 cut(s) 1107
SaqAI TTAA 2 cut(s) 950, 1152
SatI GCNGC 9 cut(s) 285, 799, 879, 882, 1020, 1031, 1034, 1096, 1205
Sau3AI GATC 4 cut(s) 37, 670, 741, 965
Sau96I GGNCC 5 cut(s) 69, 449, 771, 772, 1103
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 4 cut(s) 158, 273, 357, 650
SduI GDGCHC 2 cut(s) 165, 775
SexAI ACCWGGT 1 cut(s) 355
SfaNI GCATC 3 cut(s) 346, 482, 547
SfcI CTRYAG 2 cut(s) 879, 906
SinI GGWCC 1 cut(s) 449
SmiMI CAYNNNNRTG 1 cut(s) 1085
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
SphI GCATGC 1 cut(s) 225
Sse9I AATT 3 cut(s) 24, 63, 137
SsiI CCGC 3 cut(s) 85, 335, 746
SspMI CTAG 1 cut(s) 21
StyD4I CCNGG 4 cut(s) 156, 271, 355, 648
TaaI ACNGT 3 cut(s) 204, 293, 827
TaqI TCGA 2 cut(s) 365, 1233
TasI AATT 3 cut(s) 24, 63, 137
TfiI GAWTC 1 cut(s) 1039
Tru1I TTAA 2 cut(s) 950, 1152
Tru9I TTAA 2 cut(s) 950, 1152
TscAI CASTG 5 cut(s) 189, 741, 832, 1105, 1133
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 9 cut(s) 284, 798, 878, 881, 1019, 1030, 1033, 1095, 1204
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 243
TspGWI ACGGA 3 cut(s) 433, 646, 860
TspRI CASTG 5 cut(s) 189, 741, 832, 1105, 1133
VpaK11BI GGWCC 1 cut(s) 449
XapI RAATTY 1 cut(s) 137
XbaI TCTAGA 1 cut(s) 20
XceI RCATGY 3 cut(s) 225, 1066, 1084
XmiI GTMKAC 1 cut(s) 995
XspI CTAG 1 cut(s) 21
Zsp2I ATGCAT 2 cut(s) 223, 1086
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.