Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Forward (+)

10684118 .. 10686347

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G25110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCTTTAGGATTCTTCTGTCTCGCTATCTTCCTTTACCTAAGTCTCGATCCTGATTCCGGTTACACGTCTGCCTCCGCCGCTGCTTCTGGTAAAGAAGGTGTCGAGATTACTTATGGAAGTGCGATCAAGTTGATGCACGAGAAAACTAAATTTCGATTACATTCTCACGATGTGCCGTATGGATCCGGCAGTGGTCAGCAATCAGTCACTGGTTTTCCAGGCGTCGTTGATTCCAACAGCTATTGGATTGTTAAACCTGTGCCTGGGACAACAGAAAAGCAAGGTGATGCTGTCAAGAGTGGAGCAACCATTAGGTTGCAGCATATGAAGACCAGAAAATGGCTTCACAGTCACTTGCATGCATCTCCTATATCAGGGAACTTAGAGGTTAGCTGCTTTGGAGATGATACAAATTCCGATACTGGGGATCACTGGAAGCTTATAATTGAAGGAAGTGGGAAGACATGGAAACAGGACCAAAGAGTCCGTCTTCAACACATAGACACTAGTGGCTACCTCCATAGCCATGACAAGAAGTACCAACGTATAGCTGGTGGTCAGCAAGAGGTGTGTGGAATTCGGGAGAAGAAGGCGGATAACATTTGGTTGGCAGCAGAAGGAGTCTACCTTCCCCTTAATGAGAGCAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

218

Amino Acids

23.93

Weight (kDa)

7.78

Isoelectric Point (pI)

31.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	70 - 201	2.2e-14	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AasI	GACNNNNNNGTC	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	3 cut(s)	78, 81, 596
AclWI	GGATC	4 cut(s)	44, 180, 193, 438
AcsI	RAATTY	3 cut(s)	152, 415, 579
AcyI	GRCGYC	1 cut(s)	225
AdeI	CACNNNGTG	1 cut(s)	175
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	5 cut(s)	59, 266, 342, 377, 426
AflIII	ACRYGT	1 cut(s)	66
AgsI	TTSAA	2 cut(s)	452, 497
AhlI	ACTAGT	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	69
AjnI	CCWGG	2 cut(s)	220, 265
AluBI	AGCT	4 cut(s)	243, 396, 442, 554
AluI	AGCT	4 cut(s)	243, 396, 442, 554
Alw26I	GTCTC	2 cut(s)	26, 50
AlwI	GGATC	4 cut(s)	44, 180, 193, 438
AlwNI	CAGNNNCTG	1 cut(s)	212
ApeKI	GCWGC	5 cut(s)	83, 322, 396, 614, 648
ApoI	RAATTY	3 cut(s)	152, 415, 579
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AspS9I	GGNCC	1 cut(s)	478
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	478
BamHI	GGATCC	1 cut(s)	185
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	3 cut(s)	338, 470, 485
BbvI	GCAGC	4 cut(s)	70, 334, 383, 626
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	2 cut(s)	222, 267
BcoDI	GTCTC	2 cut(s)	26, 50
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	1 cut(s)	510
BisI	GCNGC	6 cut(s)	81, 84, 323, 397, 615, 649
BlsI	GCNGC	6 cut(s)	82, 85, 324, 398, 616, 650
Bme1390I	CCNGG	2 cut(s)	222, 267
Bme18I	GGWCC	1 cut(s)	478
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	222, 267
BmrI	ACTGGG	1 cut(s)	435
BmsI	GCATC	3 cut(s)	126, 280, 374
BmuI	ACTGGG	1 cut(s)	435
BpiI	GAAGAC	3 cut(s)	338, 470, 485
BsaHI	GRCGYC	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 266, 342, 377, 426
Bse1I	ACTGG	3 cut(s)	217, 430, 440
BseBI	CCWGG	2 cut(s)	222, 267
BseDI	CCNNGG	1 cut(s)	266
BseLI	CCNNNNNNNGG	5 cut(s)	59, 266, 342, 377, 426
BseNI	ACTGG	3 cut(s)	217, 430, 440
BseXI	GCAGC	4 cut(s)	70, 334, 383, 626
BsiSI	CCGG	2 cut(s)	60, 189
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	5 cut(s)	59, 266, 342, 377, 426
BsmAI	GTCTC	2 cut(s)	26, 50
BsmFI	GGGAC	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	49, 126, 185, 430
BspACI	CCGC	3 cut(s)	78, 81, 596
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	4 cut(s)	44, 180, 193, 438
BsrI	ACTGG	3 cut(s)	217, 430, 440
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	4 cut(s)	49, 126, 185, 430
BssNI	GRCGYC	1 cut(s)	225
BssSI	CACGAG	1 cut(s)	140
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	222, 267
Bst4CI	ACNGT	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	41, 385
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstKTI	GATC	4 cut(s)	52, 129, 188, 433
BstMAI	GTCTC	2 cut(s)	26, 50
BstMBI	GATC	4 cut(s)	49, 126, 185, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	222, 267
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	2 cut(s)	220, 265
BstV1I	GCAGC	4 cut(s)	70, 334, 383, 626
BstV2I	GAAGAC	3 cut(s)	338, 470, 485
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BtrI	CACGTC	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	199
BtsIMutI	CAGTG	3 cut(s)	199, 210, 433
Cac8I	GCNNGC	1 cut(s)	363
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	478
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	3 cut(s)	362, 468, 530
CviJI	RGCY	8 cut(s)	5, 243, 346, 396, 442, 516, 528, 554
CviKI_1	RGCY	8 cut(s)	5, 243, 346, 396, 442, 516, 528, 554
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	2 cut(s)	41, 385
DpnI	GATC	4 cut(s)	51, 128, 187, 432
DpnII	GATC	4 cut(s)	49, 126, 185, 430
DraIII	CACNNNGTG	1 cut(s)	175
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EciI	GGCGGA	2 cut(s)	67, 611
Eco47I	GGWCC	1 cut(s)	478
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	579
EcoRII	CCWGG	2 cut(s)	220, 265
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	3 cut(s)	365, 471, 533
FaqI	GGGAC	1 cut(s)	283
FatI	CATG	3 cut(s)	361, 467, 529
FauNDI	CATATG	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	6 cut(s)	81, 84, 323, 397, 615, 649
Fsp4HI	GCNGC	6 cut(s)	81, 84, 323, 397, 615, 649
FspBI	CTAG	1 cut(s)	510
GluI	GCNGC	6 cut(s)	81, 84, 323, 397, 615, 649
HapII	CCGG	2 cut(s)	60, 189
HgaI	GACGC	1 cut(s)	214
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	365, 471, 533
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	5 cut(s)	12, 56, 233, 486, 624
HpaII	CCGG	2 cut(s)	60, 189
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	6 cut(s)	47, 53, 106, 170, 298, 584
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	5 cut(s)	92, 446, 586, 614, 641
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4IV	ACGT	2 cut(s)	68, 547
HpyCH4V	TGCA	4 cut(s)	139, 322, 361, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	41, 385
HpySE526I	ACGT	2 cut(s)	68, 547
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	3 cut(s)	365, 471, 533
Kzo9I	GATC	4 cut(s)	49, 126, 185, 430
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	4 cut(s)	70, 334, 383, 626
LweI	GCATC	3 cut(s)	126, 280, 374
MaeI	CTAG	1 cut(s)	510
MaeII	ACGT	2 cut(s)	68, 547
MaeIII	GTNAC	3 cut(s)	62, 208, 353
MalI	GATC	4 cut(s)	51, 128, 187, 432
MboI	GATC	4 cut(s)	49, 126, 185, 430
MboII	GAAGA	6 cut(s)	7, 22, 343, 475, 485, 601
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	4 cut(s)	152, 415, 447, 579
MlyI	GAGTC	2 cut(s)	495, 633
MmeI	TCCRAC	1 cut(s)	261
MnlI	CCTC	4 cut(s)	85, 382, 530, 562
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	2 cut(s)	255, 639
MslI	CAYNNNNRTG	2 cut(s)	360, 528
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	2 cut(s)	60, 189
MspR9I	CCNGG	2 cut(s)	222, 267
MvaI	CCWGG	2 cut(s)	222, 267
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	4 cut(s)	49, 126, 185, 430
NlaIII	CATG	3 cut(s)	365, 471, 533
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	208, 353
NsiI	ATGCAT	1 cut(s)	367
NspI	RCATGY	1 cut(s)	365
PaeI	GCATGC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	12, 56, 233
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	6 cut(s)	82, 85, 324, 398, 616, 650
PleI	GAGTC	2 cut(s)	494, 632
PpsI	GAGTC	2 cut(s)	494, 632
PsiI	TTATAA	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	220, 265
PspGI	CCWGG	2 cut(s)	220, 265
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	478
PstNI	CAGNNNCTG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	360, 528
SaqAI	TTAA	2 cut(s)	255, 639
SatI	GCNGC	6 cut(s)	81, 84, 323, 397, 615, 649
Sau3AI	GATC	4 cut(s)	49, 126, 185, 430
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	495, 633
ScrFI	CCNGG	2 cut(s)	222, 267
SfaNI	GCATC	3 cut(s)	126, 280, 374
SinI	GGWCC	1 cut(s)	478
SmiMI	CAYNNNNRTG	2 cut(s)	360, 528
SpeI	ACTAGT	1 cut(s)	509
SphI	GCATGC	1 cut(s)	365
Sse9I	AATT	4 cut(s)	152, 415, 447, 579
SsiI	CCGC	3 cut(s)	78, 81, 596
SspMI	CTAG	1 cut(s)	510
StyD4I	CCNGG	2 cut(s)	220, 265
TaaI	ACNGT	1 cut(s)	353
TaiI	ACGT	2 cut(s)	71, 550
TaqI	TCGA	3 cut(s)	48, 105, 157
TasI	AATT	4 cut(s)	152, 415, 447, 579
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	3 cut(s)	12, 56, 233
Tru1I	TTAA	2 cut(s)	255, 639
Tru9I	TTAA	2 cut(s)	255, 639
TscAI	CASTG	3 cut(s)	199, 217, 440
TseFI	GTSAC	2 cut(s)	208, 353
TseI	GCWGC	5 cut(s)	83, 322, 396, 614, 648
Tsp45I	GTSAC	2 cut(s)	208, 353
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	3 cut(s)	199, 217, 440
Van91I	CCANNNNNTGG	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	478
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	3 cut(s)	152, 415, 579
XceI	RCATGY	1 cut(s)	365
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XmiI	GTMKAC	1 cut(s)	627
XspI	CTAG	1 cut(s)	510
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.