Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Reverse (-)

34935322 .. 34937661

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G392400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCGATGGGTTTCTTCTGCCTTGCTCTGTTCCTCATCTTCGGCCTCGATCTCGATACAGGCTACGCTGCTTCCGCTTCTACCTCCGAGGGCGTCGAGGTGACGTACGGGACTGTGCTGAAGCTGATGCACGAGAAGACCAAGTTTCGCCTGCATTCCCACGACGTGCCGTATGGTTCCGGTAGTGGTCAGCAGTCTGTCACTGGTTTTCCCAACGTTGACGATGCAAATAGCTACTGGATTGTTAGACCTGAGCTCGAAACAGCTGCCAAGCAAGGTGATAGCATTCCAAGTGGGACAATTATCAGGTTGCAGCACATGAAGACTAGGAAATGGCTGCACAGCCATTTGCACGCCTCCCCCATAACTGGCAACCAAGAGGTGAGCTGCTTTGGGGGAGAATCTGAATCTGATACTGGTGATCACTGGAGGGTTATGATTGAAGGGAGTGGGAAGACCTGGAAGCAGGATCAAAGGGTTCGAATTCAGCATGTCGACACAGGTGTTTATCTACATAGTCATGACAAGAAGTACACCCGCATTGCCGGGGGACAGCAGGAGGTTTGCGCTGTCAGAGAAAAACGCGCGGACAATGTTTGGTTGGCAGCTGAAGGCGTGTACCTCCCGGTCGGTGAAACCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

215

Amino Acids

23.72

Weight (kDa)

6.4

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	2 cut(s)	585, 587
AciI	CCGC	3 cut(s)	75, 538, 587
AclI	AACGTT	1 cut(s)	216
AclWI	GGATC	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	483
AcuI	CTGAAG	2 cut(s)	140, 630
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	166
AfaI	GTAC	3 cut(s)	107, 533, 620
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	458
AluBI	AGCT	6 cut(s)	124, 234, 256, 266, 387, 608
AluI	AGCT	6 cut(s)	124, 234, 256, 266, 387, 608
Alw21I	GWGCWC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	477
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	6 cut(s)	68, 266, 313, 337, 387, 605
ApoI	RAATTY	1 cut(s)	483
AspLEI	GCGC	2 cut(s)	569, 587
AsuC2I	CCSGG	2 cut(s)	547, 626
AsuHPI	GGTGA	5 cut(s)	112, 290, 394, 431, 644
AsuII	TTCGAA	1 cut(s)	481
BanII	GRGCYC	1 cut(s)	258
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	3 cut(s)	143, 329, 461
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	6 cut(s)	55, 253, 324, 325, 374, 617
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	460
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	547, 626
BfaI	CTAG	1 cut(s)	327
BisI	GCNGC	6 cut(s)	69, 267, 314, 338, 388, 606
BlsI	GCNGC	6 cut(s)	70, 268, 315, 339, 389, 607
Bme1390I	CCNGG	3 cut(s)	460, 547, 626
BmgBI	CACGTC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	3 cut(s)	460, 547, 626
BmsI	GCATC	2 cut(s)	117, 214
BpiI	GAAGAC	3 cut(s)	143, 329, 461
BpmI	CTGGAG	1 cut(s)	448
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu14I	TTCGAA	1 cut(s)	481
BpuMI	CCSGG	2 cut(s)	547, 626
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	87, 546
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	5 cut(s)	208, 242, 373, 421, 431
Bse3DI	GCAATG	1 cut(s)	540
BseBI	CCWGG	1 cut(s)	460
BseDI	CCNNGG	2 cut(s)	87, 546
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	5 cut(s)	208, 242, 373, 421, 431
BseXI	GCAGC	6 cut(s)	55, 253, 324, 325, 374, 617
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	585, 587
Bsh1285I	CGRYCG	1 cut(s)	630
BshFI	GGCC	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	258
BsiSI	CCGG	3 cut(s)	180, 546, 626
BsiWI	CGTACG	1 cut(s)	105
BslFI	GGGAC	3 cut(s)	124, 310, 564
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmFI	GGGAC	3 cut(s)	124, 310, 564
BsmI	GAATGC	2 cut(s)	154, 285
BsnI	GGCC	1 cut(s)	45
Bsp119I	TTCGAA	1 cut(s)	481
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	49, 421, 469
BspACI	CCGC	3 cut(s)	75, 538, 587
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	2 cut(s)	585, 587
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	540
BsrI	ACTGG	5 cut(s)	208, 242, 373, 421, 431
BssECI	CCNNGG	2 cut(s)	87, 546
BssMI	GATC	3 cut(s)	49, 421, 469
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	93
BstBI	TTCGAA	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	152, 354
BstDEI	CTNAG	1 cut(s)	252
BstFNI	CGCG	2 cut(s)	585, 587
BstHHI	GCGC	2 cut(s)	569, 587
BstKTI	GATC	3 cut(s)	52, 424, 472
BstMBI	GATC	3 cut(s)	49, 421, 469
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	458, 545, 624
BstUI	CGCG	2 cut(s)	585, 587
BstV1I	GCAGC	6 cut(s)	55, 253, 324, 325, 374, 617
BstV2I	GAAGAC	3 cut(s)	143, 329, 461
BsuRI	GGCC	1 cut(s)	45
BtgZI	GCGATG	1 cut(s)	20
BtrI	CACGTC	1 cut(s)	166
BtsIMutI	CAGTG	2 cut(s)	201, 424
Cac8I	GCNNGC	2 cut(s)	152, 354
CciI	TCATGA	1 cut(s)	520
CfoI	GCGC	2 cut(s)	569, 587
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	106, 532, 619
CviAII	CATG	3 cut(s)	319, 491, 521
CviQI	GTAC	3 cut(s)	106, 532, 619
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	3 cut(s)	51, 423, 471
DpnII	GATC	3 cut(s)	49, 421, 469
DraIII	CACNNNGTG	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	2 cut(s)	140, 630
EcoICRI	GAGCTC	1 cut(s)	256
EcoRI	GAATTC	1 cut(s)	483
EcoRII	CCWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	258
FaeI	CATG	3 cut(s)	322, 494, 524
FaiI	YATR	7 cut(s)	174, 320, 365, 437, 492, 516, 522
FaqI	GGGAC	3 cut(s)	124, 310, 564
FatI	CATG	3 cut(s)	318, 490, 520
FauI	CCCGC	1 cut(s)	545
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	6 cut(s)	69, 267, 314, 338, 388, 606
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	6 cut(s)	69, 267, 314, 338, 388, 606
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	2 cut(s)	568, 586
GluI	GCNGC	6 cut(s)	69, 267, 314, 338, 388, 606
GsuI	CTGGAG	1 cut(s)	448
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	3 cut(s)	180, 546, 626
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	2 cut(s)	569, 587
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	322, 494, 524
Hin6I	GCGC	2 cut(s)	567, 585
HinP1I	GCGC	2 cut(s)	567, 585
HincII	GTYRAC	2 cut(s)	220, 496
HindII	GTYRAC	2 cut(s)	220, 496
HinfI	GANTC	2 cut(s)	401, 407
HpaII	CCGG	3 cut(s)	180, 546, 626
HphI	GGTGA	5 cut(s)	112, 290, 394, 431, 644
Hpy166II	GTNNAC	4 cut(s)	220, 496, 534, 619
Hpy188I	TCNGA	4 cut(s)	88, 406, 412, 575
Hpy188III	TCNNGA	2 cut(s)	53, 521
Hpy8I	GTNNAC	4 cut(s)	220, 496, 534, 619
Hpy99I	CGWCG	2 cut(s)	98, 167
HpyAV	CCTTC	2 cut(s)	437, 605
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4IV	ACGT	3 cut(s)	104, 165, 216
HpyCH4V	TGCA	6 cut(s)	130, 154, 227, 313, 340, 352
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	3 cut(s)	104, 165, 216
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	322, 494, 524
HspAI	GCGC	2 cut(s)	567, 585
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	3 cut(s)	49, 421, 469
Lsp1109I	GCAGC	6 cut(s)	55, 253, 324, 325, 374, 617
LweI	GCATC	2 cut(s)	117, 214
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	3 cut(s)	104, 165, 216
MaeIII	GTNAC	2 cut(s)	100, 199
MalI	GATC	3 cut(s)	51, 423, 471
MboI	GATC	3 cut(s)	49, 421, 469
MboII	GAAGA	5 cut(s)	7, 31, 148, 334, 466
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	2 cut(s)	300, 483
MslI	CAYNNNNRTG	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	266, 608
MspI	CCGG	3 cut(s)	180, 546, 626
MspR9I	CCNGG	3 cut(s)	460, 547, 626
Mva1269I	GAATGC	2 cut(s)	154, 285
MvaI	CCWGG	1 cut(s)	460
MvnI	CGCG	2 cut(s)	585, 587
MwoI	GCNNNNNNNGC	1 cut(s)	74
NciI	CCSGG	2 cut(s)	547, 626
NdeII	GATC	3 cut(s)	49, 421, 469
NlaIII	CATG	3 cut(s)	322, 494, 524
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	2 cut(s)	100, 199
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	481
PagI	TCATGA	1 cut(s)	520
PctI	GAATGC	2 cut(s)	154, 285
PfeI	GAWTC	2 cut(s)	401, 407
Pfl23II	CGTACG	1 cut(s)	105
PkrI	GCNGC	6 cut(s)	70, 268, 315, 339, 389, 607
Psp124BI	GAGCTC	1 cut(s)	258
Psp1406I	AACGTT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspLI	CGTACG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	178
PvuII	CAGCTG	2 cut(s)	266, 608
RsaI	GTAC	3 cut(s)	107, 533, 620
RsaNI	GTAC	3 cut(s)	106, 532, 619
RseI	CAYNNNNRTG	1 cut(s)	519
SacI	GAGCTC	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	494
SatI	GCNGC	6 cut(s)	69, 267, 314, 338, 388, 606
Sau3AI	GATC	3 cut(s)	49, 421, 469
ScrFI	CCNGG	3 cut(s)	460, 547, 626
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	2 cut(s)	117, 214
SfuI	TTCGAA	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	519
Sse9I	AATT	2 cut(s)	300, 483
SsiI	CCGC	3 cut(s)	75, 538, 587
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	1 cut(s)	258
StyD4I	CCNGG	3 cut(s)	458, 545, 624
TaaI	ACNGT	1 cut(s)	115
TaiI	ACGT	3 cut(s)	107, 168, 219
TaqI	TCGA	6 cut(s)	48, 54, 96, 258, 481, 495
TasI	AATT	2 cut(s)	300, 483
TatI	WGTACW	1 cut(s)	531
TfiI	GAWTC	2 cut(s)	401, 407
TscAI	CASTG	2 cut(s)	208, 431
TseFI	GTSAC	2 cut(s)	100, 199
TseI	GCWGC	6 cut(s)	68, 266, 313, 337, 387, 605
Tsp45I	GTSAC	2 cut(s)	100, 199
TspDTI	ATGAA	1 cut(s)	335
TspRI	CASTG	2 cut(s)	208, 431
XapI	RAATTY	1 cut(s)	483
XceI	RCATGY	1 cut(s)	494
XmiI	GTMKAC	1 cut(s)	495
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.