Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Reverse (-)

9179527 .. 9181867

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011408

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTGGAAACGTGGGCAATGGGCTGGGGATGAACCTAGTCTCCCAACCCACACAGGGTATTGGGCTGACTTCCTCCAGGATTCCAACCATGTCACCCGACGTGCTGCTCACTCTCCAAACAGAAAAATCACACGGAAGAGTAGACCTGGGAGACCCCAGATCGATCGAAACCCCCAGATTGCTGTAAAATCCATAACCGTGGCTTCCTCAGCGTCTCCAAGTTTGACGCGAAGAAAACCCTCCTCTTCTTCTTCTTATTCTTCTTCTTCTTCCACAGAGCCGGGTCGGGTCGTGGGAAGAGTAACTATACCCAGCCGGGCTTTGGAGCCTCAGTTTCCGTTTTGGCAACAGACCTGGTTCATAGCCTTACTCCTGGCCATGGCCATGGGCTTTCTCTGCTTAGCTGTCTTCCTCTTCCTCGGCCTCGACCTCGATACAGGCTACGCCGCCACCACCCCTACCTCAGAGGGCGTCGAGATCACATACGGAACTGTGCTGAAGCTGATGCACGAGAGGACCAAGTTTCGGTTGCACTCGCACGACGTGCCGTATGGCTCTGGCAGTGGCCAGCAGTCTGTCACTGGATTTCCAAATGTCGACGATGCTAATAGCTACTGGATTGTTAGACCTCAGCTTGAAACATCTGCCAGGCAAGGTGACAGCATTCCGAGTGGGACGATCGTCAGGTTGCAACACATGAGGACTAGGAAATGGCTGCACAGCCATTTGCACGCATCCCCGATATCAGGCAACCAAGAGATAAGCTGCTTTGGGGGAGAACATGAATCTGATACTGGTGATCACTGGAGGGTTATGATTGAAGGAAGTGGGAAGACCTGGAAGCAAGATCAAAGGGTTCGACTTCAGCATGTTGACACTGGTGCTTACCTACACAGTCATGACAAGAAATACCAACGCATAGCTGGGGGACAGCAGGAGGTTTGTGGTGTGAGAGACAAACGTGCTGACAATGTTTGGCTGGCAGCAGAAGGTGTATACCTTCCAGTTACTGAAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

341

Amino Acids

37.98

Weight (kDa)

9.51

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	178 - 324	1.8e-14	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	142, 597, 996
AccII	CGCG	1 cut(s)	229
AciI	CCGC	1 cut(s)	447
AcoI	YGGCCR	3 cut(s)	375, 381, 565
AcuI	CTGAAG	2 cut(s)	518, 848
AcyI	GRCGYC	1 cut(s)	471
AdeI	CACNNNGTG	1 cut(s)	544
AfiI	CCNNNNNNNGG	5 cut(s)	54, 322, 379, 525, 746
AgsI	TTSAA	2 cut(s)	638, 821
AjiI	CACGTC	2 cut(s)	101, 544
AjnI	CCWGG	6 cut(s)	75, 145, 353, 372, 647, 836
AloI	GAACNNNNNNTCC	2 cut(s)	24, 56
AluBI	AGCT	6 cut(s)	404, 502, 612, 634, 765, 923
AluI	AGCT	6 cut(s)	404, 502, 612, 634, 765, 923
Alw26I	GTCTC	4 cut(s)	44, 145, 219, 948
AlwNI	CAGNNNCTG	1 cut(s)	1010
AoxI	GGCC	4 cut(s)	375, 381, 421, 565
ApeKI	GCWGC	4 cut(s)	104, 715, 765, 983
AspS9I	GGNCC	1 cut(s)	516
AsuC2I	CCSGG	2 cut(s)	282, 317
AsuHPI	GGTGA	3 cut(s)	85, 668, 809
AvaII	GGWCC	1 cut(s)	516
BalI	TGGCCA	3 cut(s)	377, 383, 567
BauI	CACGAG	1 cut(s)	509
BbsI	GAAGAC	2 cut(s)	400, 839
BbvCI	CCTCAGC	2 cut(s)	208, 630
BbvI	GCAGC	4 cut(s)	91, 702, 752, 995
BceAI	ACGGC	1 cut(s)	532
BciT130I	CCWGG	6 cut(s)	77, 147, 355, 374, 649, 838
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	2 cut(s)	282, 317
BcoDI	GTCTC	4 cut(s)	44, 145, 219, 948
BfaI	CTAG	2 cut(s)	36, 705
BisI	GCNGC	5 cut(s)	105, 447, 716, 766, 984
BlpI	GCTNAGC	1 cut(s)	400
BlsI	GCNGC	5 cut(s)	106, 448, 717, 767, 985
Bme1390I	CCNGG	8 cut(s)	77, 147, 282, 317, 355, 374, 649, 838
Bme18I	GGWCC	1 cut(s)	516
BmgBI	CACGTC	2 cut(s)	101, 544
BmgT120I	GGNCC	1 cut(s)	516
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	8 cut(s)	77, 147, 282, 317, 355, 374, 649, 838
BmsI	GCATC	3 cut(s)	495, 592, 743
BoxI	GACNNNNGTC	1 cut(s)	680
BpiI	GAAGAC	2 cut(s)	400, 839
BpmI	CTGGAG	2 cut(s)	59, 826
Bpu10I	CCTNAGC	2 cut(s)	208, 630
Bpu1102I	GCTNAGC	1 cut(s)	400
BpuMI	CCSGG	2 cut(s)	282, 317
Bsa29I	ATCGAT	1 cut(s)	162
BsaHI	GRCGYC	1 cut(s)	471
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	5 cut(s)	146, 198, 378, 384, 418
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 54, 317, 347
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 322, 379, 525, 746
Bse1I	ACTGG	6 cut(s)	586, 620, 799, 809, 883, 1004
Bse3DI	GCAATG	1 cut(s)	23
BseBI	CCWGG	6 cut(s)	77, 147, 355, 374, 649, 838
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	5 cut(s)	146, 198, 378, 384, 418
BseGI	GGATG	2 cut(s)	34, 734
BseLI	CCNNNNNNNGG	5 cut(s)	54, 322, 379, 525, 746
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	4 cut(s)	222, 344, 477, 644
BseNI	ACTGG	6 cut(s)	586, 620, 799, 809, 883, 1004
BseRI	GAGGAG	1 cut(s)	232
BseXI	GCAGC	4 cut(s)	91, 702, 752, 995
BseYI	CCCAGC	3 cut(s)	23, 311, 923
BsgI	GTGCAG	1 cut(s)	701
Bsh1236I	CGCG	1 cut(s)	229
Bsh1285I	CGRYCG	2 cut(s)	166, 681
BshFI	GGCC	4 cut(s)	377, 383, 423, 567
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	2 cut(s)	166, 681
BsiSI	CCGG	2 cut(s)	281, 316
BslFI	GGGAC	2 cut(s)	688, 942
BslI	CCNNNNNNNGG	5 cut(s)	54, 322, 379, 525, 746
BsmAI	GTCTC	4 cut(s)	44, 145, 219, 948
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	2 cut(s)	688, 942
BsmI	GAATGC	1 cut(s)	663
BsnI	GGCC	4 cut(s)	377, 383, 423, 567
Bso31I	GGTCTC	1 cut(s)	145
Bsp143I	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
Bsp1720I	GCTNAGC	1 cut(s)	400
Bsp19I	CCATGG	2 cut(s)	378, 384
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	4 cut(s)	377, 383, 423, 567
BspCNI	CTCAG	4 cut(s)	221, 343, 476, 643
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	898
BspLI	GGNNCC	1 cut(s)	327
BspTNI	GGTCTC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	6 cut(s)	586, 620, 799, 809, 883, 1004
BssECI	CCNNGG	5 cut(s)	146, 198, 378, 384, 418
BssMI	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
BssNAI	GTATAC	1 cut(s)	997
BssNI	GRCGYC	1 cut(s)	471
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	378, 384
Bst1107I	GTATAC	1 cut(s)	997
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	6 cut(s)	77, 147, 355, 374, 649, 838
Bst4CI	ACNGT	3 cut(s)	199, 493, 896
Bst6I	CTCTTC	4 cut(s)	131, 250, 292, 419
BstACI	GRCGYC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	569, 732, 981
BstDEI	CTNAG	6 cut(s)	208, 330, 400, 463, 630, 1017
BstDSI	CCRYGG	3 cut(s)	198, 378, 384
BstF5I	GGATG	2 cut(s)	34, 734
BstFNI	CGCG	1 cut(s)	229
BstKTI	GATC	6 cut(s)	162, 166, 480, 681, 802, 850
BstMAI	GTCTC	4 cut(s)	44, 145, 219, 948
BstMBI	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
BstMCI	CGRYCG	2 cut(s)	166, 681
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 396, 544
BstNI	CCWGG	6 cut(s)	77, 147, 355, 374, 649, 838
BstNSI	RCATGY	1 cut(s)	872
BstPAI	GACNNNNGTC	1 cut(s)	680
BstSCI	CCNGG	8 cut(s)	75, 145, 280, 315, 353, 372, 647, 836
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	4 cut(s)	91, 702, 752, 995
BstV2I	GAAGAC	2 cut(s)	400, 839
BstXI	CCANNNNNNTGG	2 cut(s)	199, 385
BstZ17I	GTATAC	1 cut(s)	997
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	4 cut(s)	377, 383, 423, 567
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	3 cut(s)	198, 378, 384
BtrI	CACGTC	2 cut(s)	101, 544
BtsCI	GGATG	2 cut(s)	34, 734
BtsI	GCAGTG	1 cut(s)	568
BtsIMutI	CAGTG	4 cut(s)	568, 579, 802, 876
Cac8I	GCNNGC	3 cut(s)	569, 732, 981
CaiI	CAGNNNCTG	1 cut(s)	1010
CciI	TCATGA	1 cut(s)	898
Cfr13I	GGNCC	1 cut(s)	516
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	3 cut(s)	201, 235, 460
CsiI	ACCWGGT	1 cut(s)	353
CviAII	CATG	7 cut(s)	89, 379, 385, 697, 782, 869, 899
DdeI	CTNAG	6 cut(s)	208, 330, 400, 463, 630, 1017
DpnI	GATC	6 cut(s)	161, 165, 479, 680, 801, 849
DpnII	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
DraIII	CACNNNGTG	1 cut(s)	544
EaeI	YGGCCR	3 cut(s)	375, 381, 565
Eam1104I	CTCTTC	4 cut(s)	131, 250, 292, 419
EarI	CTCTTC	4 cut(s)	131, 250, 292, 419
Eco130I	CCWWGG	2 cut(s)	378, 384
Eco31I	GGTCTC	1 cut(s)	145
Eco32I	GATATC	1 cut(s)	744
Eco47I	GGWCC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	518, 848
EcoRII	CCWGG	6 cut(s)	75, 145, 353, 372, 647, 836
EcoRV	GATATC	1 cut(s)	744
EcoT14I	CCWWGG	2 cut(s)	378, 384
ErhI	CCWWGG	2 cut(s)	378, 384
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	7 cut(s)	92, 382, 388, 700, 785, 872, 902
FaqI	GGGAC	2 cut(s)	688, 942
FatI	CATG	7 cut(s)	88, 378, 384, 696, 781, 868, 898
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	3 cut(s)	142, 597, 996
Fnu4HI	GCNGC	5 cut(s)	105, 447, 716, 766, 984
FokI	GGATG	2 cut(s)	41, 721
Fsp4HI	GCNGC	5 cut(s)	105, 447, 716, 766, 984
FspBI	CTAG	2 cut(s)	36, 705
GluI	GCNGC	5 cut(s)	105, 447, 716, 766, 984
GsaI	CCCAGC	3 cut(s)	27, 315, 927
GsuI	CTGGAG	2 cut(s)	59, 826
HaeIII	GGCC	4 cut(s)	377, 383, 423, 567
HapII	CCGG	2 cut(s)	281, 316
HgaI	GACGC	3 cut(s)	201, 235, 460
Hin1I	GRCGYC	1 cut(s)	471
Hin1II	CATG	7 cut(s)	92, 382, 388, 700, 785, 872, 902
HincII	GTYRAC	2 cut(s)	598, 874
HindII	GTYRAC	2 cut(s)	598, 874
HinfI	GANTC	2 cut(s)	80, 785
HpaII	CCGG	2 cut(s)	281, 316
HphI	GGTGA	3 cut(s)	85, 668, 809
Hpy166II	GTNNAC	4 cut(s)	143, 598, 874, 997
Hpy188I	TCNGA	3 cut(s)	466, 669, 790
Hpy188III	TCNNGA	2 cut(s)	475, 899
Hpy8I	GTNNAC	4 cut(s)	143, 598, 874, 997
Hpy99I	CGWCG	4 cut(s)	102, 476, 545, 602
HpyAV	CCTTC	3 cut(s)	815, 983, 1010
HpyCH4III	ACNGT	3 cut(s)	199, 493, 896
HpyCH4IV	ACGT	4 cut(s)	10, 100, 543, 961
HpyCH4V	TGCA	5 cut(s)	508, 532, 691, 718, 730
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 396, 544
HpyF3I	CTNAG	6 cut(s)	208, 330, 400, 463, 630, 1017
HpySE526I	ACGT	4 cut(s)	10, 100, 543, 961
Hsp92I	GRCGYC	1 cut(s)	471
Hsp92II	CATG	7 cut(s)	92, 382, 388, 700, 785, 872, 902
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
LmnI	GCTCC	1 cut(s)	325
Lsp1109I	GCAGC	4 cut(s)	91, 702, 752, 995
LweI	GCATC	3 cut(s)	495, 592, 743
MabI	ACCWGGT	1 cut(s)	353
MaeI	CTAG	2 cut(s)	36, 705
MaeII	ACGT	4 cut(s)	10, 100, 543, 961
MaeIII	GTNAC	5 cut(s)	91, 301, 577, 656, 1006
MalI	GATC	6 cut(s)	161, 165, 479, 680, 801, 849
MboI	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
MlsI	TGGCCA	3 cut(s)	377, 383, 567
MluNI	TGGCCA	3 cut(s)	377, 383, 567
MmeI	TCCRAC	1 cut(s)	108
Mox20I	TGGCCA	3 cut(s)	377, 383, 567
MscI	TGGCCA	3 cut(s)	377, 383, 567
MslI	CAYNNNNRTG	3 cut(s)	197, 383, 897
Msp20I	TGGCCA	3 cut(s)	377, 383, 567
MspI	CCGG	2 cut(s)	281, 316
MspR9I	CCNGG	8 cut(s)	77, 147, 282, 317, 355, 374, 649, 838
Mva1269I	GAATGC	1 cut(s)	663
MvaI	CCWGG	6 cut(s)	77, 147, 355, 374, 649, 838
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	209, 396, 544
NciI	CCSGG	2 cut(s)	282, 317
NcoI	CCATGG	2 cut(s)	378, 384
NdeII	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
NlaIII	CATG	7 cut(s)	92, 382, 388, 700, 785, 872, 902
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	399
NmuCI	GTSAC	3 cut(s)	91, 577, 656
NspI	RCATGY	1 cut(s)	872
PagI	TCATGA	1 cut(s)	898
PctI	GAATGC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	80, 785
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	5 cut(s)	106, 448, 717, 767, 985
Ple19I	CGATCG	2 cut(s)	166, 681
PshAI	GACNNNNGTC	1 cut(s)	680
Psp6I	CCWGG	6 cut(s)	75, 145, 353, 372, 647, 836
PspFI	CCCAGC	3 cut(s)	23, 311, 923
PspGI	CCWGG	6 cut(s)	75, 145, 353, 372, 647, 836
PspN4I	GGNNCC	1 cut(s)	327
PspPI	GGNCC	1 cut(s)	516
PstNI	CAGNNNCTG	1 cut(s)	1010
PvuI	CGATCG	2 cut(s)	166, 681
RseI	CAYNNNNRTG	3 cut(s)	197, 383, 897
SalI	GTCGAC	1 cut(s)	596
SatI	GCNGC	5 cut(s)	105, 447, 716, 766, 984
Sau3AI	GATC	6 cut(s)	159, 163, 477, 678, 799, 847
Sau96I	GGNCC	1 cut(s)	516
ScrFI	CCNGG	8 cut(s)	77, 147, 282, 317, 355, 374, 649, 838
SexAI	ACCWGGT	1 cut(s)	353
SfaNI	GCATC	3 cut(s)	495, 592, 743
SinI	GGWCC	1 cut(s)	516
SmiMI	CAYNNNNRTG	3 cut(s)	197, 383, 897
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	2 cut(s)	36, 705
StyD4I	CCNGG	8 cut(s)	75, 145, 280, 315, 353, 372, 647, 836
StyI	CCWWGG	2 cut(s)	378, 384
TaaI	ACNGT	3 cut(s)	199, 493, 896
TaiI	ACGT	4 cut(s)	13, 103, 546, 964
TaqI	TCGA	7 cut(s)	162, 166, 426, 432, 474, 597, 859
TauI	GCSGC	1 cut(s)	449
TfiI	GAWTC	2 cut(s)	80, 785
TscAI	CASTG	4 cut(s)	568, 586, 809, 883
TseFI	GTSAC	3 cut(s)	91, 577, 656
TseI	GCWGC	4 cut(s)	104, 715, 765, 983
Tsp45I	GTSAC	3 cut(s)	91, 577, 656
TspDTI	ATGAA	3 cut(s)	45, 349, 798
TspGWI	ACGGA	3 cut(s)	148, 327, 501
TspRI	CASTG	4 cut(s)	568, 586, 809, 883
VpaK11BI	GGWCC	1 cut(s)	516
XceI	RCATGY	1 cut(s)	872
XcmI	CCANNNNNNNNNTGG	2 cut(s)	319, 920
XmiI	GTMKAC	3 cut(s)	142, 597, 996
XspI	CTAG	2 cut(s)	36, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.