Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Forward (+)

60019594 .. 60021420

Gene Structure 1827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG415400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCCATGGGCTTTCTCTGCTTAGCTGTCTTCCTCTTCCTCGGCCTCGACCTCGATACAGGCTACGCGGCCACCACCCCTACCCCTACCTCAGAGGGCGTCGAGATCACATACGGAACTGTGCTCAAGCTGATGCACGAGAGGACCAAGTTTCGGTTGCACTCGCACGACGTGCCGTATGGCTCTGGCAGTGGCCAGCAGTCTGTCACTGGATTTCCAAATGTCGACGATGCTAATAGCTACTGGATTGTTAGACCTCAGCTTGAAACATCTGCCAGGCAAGGTGACAGCATTCCGAGTGGGACGATCGTCAGGTTGCATCACATGAGGACTAGGAAATGGCTGCACAGCCATTTGCACGCATCCCCGATATCAGGCAACCAAGAGATAAGCTGCTTTGGGGGAGAACATGAATCTGATACTGGTGATCACTGGAGGGTTATGATTGAAGGAAGTGGGAAGACCTGGAAGCAAGATCAAAGGGTTCGACTTCAGCATGTTGACACTGGTGCTTACCTACACAGTCATGACAAGAAATACCAACGCATAGCTGGGGGACAGCAGGAGGTTTGTGGTGTGAGAGACAAACGTGCTGACAATGTTTGGCTGGCAGCAGAAGGTGTATACCTTCCAGTTACTGAAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

216

Amino Acids

24.1

Weight (kDa)

6.66

Isoelectric Point (pI)

31.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	66 - 200	4e-14	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	225, 624
AccII	CGCG	1 cut(s)	68
AciI	CCGC	1 cut(s)	68
AcoI	YGGCCR	3 cut(s)	3, 69, 193
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	99
AdeI	CACNNNGTG	1 cut(s)	172
AfiI	CCNNNNNNNGG	2 cut(s)	153, 374
AgsI	TTSAA	2 cut(s)	266, 449
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	2 cut(s)	275, 464
AluBI	AGCT	6 cut(s)	26, 130, 240, 262, 393, 551
AluI	AGCT	6 cut(s)	26, 130, 240, 262, 393, 551
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	1 cut(s)	576
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	4 cut(s)	3, 43, 69, 193
ApeKI	GCWGC	3 cut(s)	343, 393, 611
AspS9I	GGNCC	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	296, 437
AvaII	GGWCC	1 cut(s)	144
BalI	TGGCCA	2 cut(s)	5, 195
BauI	CACGAG	1 cut(s)	137
BbsI	GAAGAC	2 cut(s)	22, 467
Bbv12I	GWGCWC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	330, 380, 623
BceAI	ACGGC	1 cut(s)	160
BciT130I	CCWGG	2 cut(s)	277, 466
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	576
BfaI	CTAG	1 cut(s)	333
BisI	GCNGC	4 cut(s)	69, 344, 394, 612
BlpI	GCTNAGC	1 cut(s)	22
BlsI	GCNGC	4 cut(s)	70, 345, 395, 613
Bme1390I	CCNGG	2 cut(s)	277, 466
Bme18I	GGWCC	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	277, 466
BmsI	GCATC	4 cut(s)	123, 220, 328, 371
BoxI	GACNNNNGTC	1 cut(s)	308
BpiI	GAAGAC	2 cut(s)	22, 467
BpmI	CTGGAG	1 cut(s)	454
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu1102I	GCTNAGC	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	6, 40
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 374
Bse1I	ACTGG	6 cut(s)	214, 248, 427, 437, 511, 632
BseBI	CCWGG	2 cut(s)	277, 466
BseDI	CCNNGG	2 cut(s)	6, 40
BseGI	GGATG	1 cut(s)	362
BseLI	CCNNNNNNNGG	2 cut(s)	153, 374
BseMII	CTCAG	2 cut(s)	105, 272
BseNI	ACTGG	6 cut(s)	214, 248, 427, 437, 511, 632
BseXI	GCAGC	3 cut(s)	330, 380, 623
BseYI	CCCAGC	1 cut(s)	551
BsgI	GTGCAG	1 cut(s)	329
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	4 cut(s)	5, 45, 71, 195
BsiEI	CGRYCG	1 cut(s)	309
BsiHKAI	GWGCWC	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	316, 570
BslI	CCNNNNNNNGG	2 cut(s)	153, 374
BsmAI	GTCTC	1 cut(s)	576
BsmFI	GGGAC	2 cut(s)	316, 570
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	4 cut(s)	5, 45, 71, 195
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	4 cut(s)	105, 306, 427, 475
Bsp1720I	GCTNAGC	1 cut(s)	22
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	4 cut(s)	5, 45, 71, 195
BspCNI	CTCAG	2 cut(s)	104, 271
BspFNI	CGCG	1 cut(s)	68
BspHI	TCATGA	1 cut(s)	526
BsrI	ACTGG	6 cut(s)	214, 248, 427, 437, 511, 632
BssECI	CCNNGG	2 cut(s)	6, 40
BssMI	GATC	4 cut(s)	105, 306, 427, 475
BssNAI	GTATAC	1 cut(s)	625
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	6
Bst1107I	GTATAC	1 cut(s)	625
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	277, 466
Bst4CI	ACNGT	2 cut(s)	121, 524
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	99
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	197, 360, 609
BstDEI	CTNAG	4 cut(s)	22, 91, 258, 645
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	362
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	4 cut(s)	108, 309, 430, 478
BstMAI	GTCTC	1 cut(s)	576
BstMBI	GATC	4 cut(s)	105, 306, 427, 475
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 172
BstNI	CCWGG	2 cut(s)	277, 466
BstNSI	RCATGY	1 cut(s)	500
BstPAI	GACNNNNGTC	1 cut(s)	308
BstSCI	CCNGG	2 cut(s)	275, 464
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	3 cut(s)	330, 380, 623
BstV2I	GAAGAC	2 cut(s)	22, 467
BstZ17I	GTATAC	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	5, 45, 71, 195
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	172
BtsCI	GGATG	1 cut(s)	362
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	4 cut(s)	196, 207, 430, 504
Cac8I	GCNNGC	3 cut(s)	197, 360, 609
CaiI	CAGNNNCTG	1 cut(s)	638
CciI	TCATGA	1 cut(s)	526
Cfr13I	GGNCC	1 cut(s)	144
CseI	GACGC	1 cut(s)	88
CviAII	CATG	5 cut(s)	7, 325, 410, 497, 527
DdeI	CTNAG	4 cut(s)	22, 91, 258, 645
DpnI	GATC	4 cut(s)	107, 308, 429, 477
DpnII	GATC	4 cut(s)	105, 306, 427, 475
DraIII	CACNNNGTG	1 cut(s)	172
EaeI	YGGCCR	3 cut(s)	3, 69, 193
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	6
Eco32I	GATATC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	144
Eco57I	CTGAAG	1 cut(s)	476
EcoRII	CCWGG	2 cut(s)	275, 464
EcoRV	GATATC	1 cut(s)	372
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	5 cut(s)	10, 328, 413, 500, 530
FaqI	GGGAC	2 cut(s)	316, 570
FatI	CATG	5 cut(s)	6, 324, 409, 496, 526
FbaI	TGATCA	1 cut(s)	427
FblI	GTMKAC	2 cut(s)	225, 624
Fnu4HI	GCNGC	4 cut(s)	69, 344, 394, 612
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	4 cut(s)	69, 344, 394, 612
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	4 cut(s)	69, 344, 394, 612
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	454
HaeIII	GGCC	4 cut(s)	5, 45, 71, 195
HgaI	GACGC	1 cut(s)	88
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	5 cut(s)	10, 328, 413, 500, 530
HincII	GTYRAC	2 cut(s)	226, 502
HindII	GTYRAC	2 cut(s)	226, 502
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	2 cut(s)	296, 437
Hpy166II	GTNNAC	3 cut(s)	226, 502, 625
Hpy188I	TCNGA	3 cut(s)	94, 297, 418
Hpy188III	TCNNGA	2 cut(s)	103, 527
Hpy8I	GTNNAC	3 cut(s)	226, 502, 625
Hpy99I	CGWCG	3 cut(s)	104, 173, 230
HpyAV	CCTTC	3 cut(s)	443, 611, 638
HpyCH4III	ACNGT	2 cut(s)	121, 524
HpyCH4IV	ACGT	2 cut(s)	171, 589
HpyCH4V	TGCA	5 cut(s)	136, 160, 319, 346, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 172
HpyF3I	CTNAG	4 cut(s)	22, 91, 258, 645
HpySE526I	ACGT	2 cut(s)	171, 589
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	5 cut(s)	10, 328, 413, 500, 530
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	4 cut(s)	105, 306, 427, 475
Lsp1109I	GCAGC	3 cut(s)	330, 380, 623
LweI	GCATC	4 cut(s)	123, 220, 328, 371
MaeI	CTAG	1 cut(s)	333
MaeII	ACGT	2 cut(s)	171, 589
MaeIII	GTNAC	3 cut(s)	205, 284, 634
MalI	GATC	4 cut(s)	107, 308, 429, 477
MboI	GATC	4 cut(s)	105, 306, 427, 475
MboII	GAAGA	3 cut(s)	22, 28, 472
MhlI	GDGCHC	1 cut(s)	126
MlsI	TGGCCA	2 cut(s)	5, 195
MluNI	TGGCCA	2 cut(s)	5, 195
Mox20I	TGGCCA	2 cut(s)	5, 195
MscI	TGGCCA	2 cut(s)	5, 195
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	2 cut(s)	5, 195
MspR9I	CCNGG	2 cut(s)	277, 466
Mva1269I	GAATGC	1 cut(s)	291
MvaI	CCWGG	2 cut(s)	277, 466
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	18, 172
NcoI	CCATGG	1 cut(s)	6
NdeII	GATC	4 cut(s)	105, 306, 427, 475
NlaIII	CATG	5 cut(s)	10, 328, 413, 500, 530
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	205, 284
NspI	RCATGY	1 cut(s)	500
PagI	TCATGA	1 cut(s)	526
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	4 cut(s)	70, 345, 395, 613
Ple19I	CGATCG	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	308
Psp6I	CCWGG	2 cut(s)	275, 464
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	2 cut(s)	275, 464
PspPI	GGNCC	1 cut(s)	144
PstNI	CAGNNNCTG	1 cut(s)	638
PvuI	CGATCG	1 cut(s)	309
RseI	CAYNNNNRTG	1 cut(s)	525
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	4 cut(s)	69, 344, 394, 612
Sau3AI	GATC	4 cut(s)	105, 306, 427, 475
Sau96I	GGNCC	1 cut(s)	144
ScrFI	CCNGG	2 cut(s)	277, 466
SduI	GDGCHC	1 cut(s)	126
SfaNI	GCATC	4 cut(s)	123, 220, 328, 371
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	275, 464
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	121, 524
TaiI	ACGT	2 cut(s)	174, 592
TaqI	TCGA	5 cut(s)	48, 54, 102, 225, 487
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	413
TscAI	CASTG	4 cut(s)	196, 214, 437, 511
TseFI	GTSAC	2 cut(s)	205, 284
TseI	GCWGC	3 cut(s)	343, 393, 611
Tsp45I	GTSAC	2 cut(s)	205, 284
TspDTI	ATGAA	1 cut(s)	426
TspGWI	ACGGA	1 cut(s)	129
TspRI	CASTG	4 cut(s)	196, 214, 437, 511
VpaK11BI	GGWCC	1 cut(s)	144
XceI	RCATGY	1 cut(s)	500
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmiI	GTMKAC	2 cut(s)	225, 624
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.