Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009437

Physical Location & Seq

Genomic Coordinates Reverse (-)

44091284 .. 44095180

Gene Structure 3897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0290600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGTCTAAGTTTTCGAATCCAACAACAGTTTTTTCTTGGCTCTTGTGCAAAAGCATTTCAGACAATGTATATAAAGTAAATAAAGTAAAGGGAACCCTAGCATTTCCTCCTTTTCTCCTTCTTCCTCTCTCGGGCCGCACACGCCTCTCTCTCTCCTCTCCTCTTACCTTCTATTCTCTTTCCCTTCCACTTCTCTCTGCCATCATCGGAGACCACCATTTTTGGCCACCAATTCACGACACCACCCTTGGATCAGCTCCTCTGCTTGAAGACGATAAATGGAATCGGAGTTCTGCAATTCAGGTACTATGGATTCATCAAGAAAAGCCCAAGTCCTGGTACCTAATTCAAGAACTGCTCTTTCCAAGACAGCATAGTGGAGAAAATGGACATGCCAGATCTAAACGACTTGCATCTTTAGCATCATCTCTGGCTGTGGTAAATTGTGAGATCTTTGGGGGGATTGAGATTGCTAGTGAGGAGAATGATGGTGAAGTTCTAATGGGGTTGCTGGGAGGGTGTGAAAGTTGTGTGTCGAATGTGGTTTCTAGGATCAAGGGGCCTTGGGCTATCATCTATTGGCTGGTAACTTTTGAGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

201

Amino Acids

22.41

Weight (kDa)

7.0

Isoelectric Point (pI)

44.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31890 AT4G31890 AT4G31890
fragaria_vesca	FvH4_2g40980 FvH4_2g40980
malus_domestica	MD08G1057900.v1.1 MD15G1038300.v1.1
prunus_persica	Prupe.1G392300_v2.0.a1 Prupe.1G392300_v2.0.a1
pyrus_communis	pycom08g04810 pycom15g03580
rosa_chinensis	RchiOBHm_Chr6g0299591
rosa_laevigata	RLG00000011407
rosa_multiflora	Rmu_sc0024600.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168530
rosa_rugosa	Rorug06G0290600 Rorug06G0290700
rosa_samantha	Rh6AG401600 Rh6BG410000 Rh6CG415500 Rh6DG402800
rosa_wichuraiana	Rw6G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	339
AciI	CCGC	1 cut(s)	139
AclWI	GGATC	2 cut(s)	262, 563
AcoI	YGGCCR	1 cut(s)	227
AfaI	GTAC	2 cut(s)	309, 344
AfiI	CCNNNNNNNGG	2 cut(s)	134, 339
AgsI	TTSAA	2 cut(s)	272, 353
AjnI	CCWGG	1 cut(s)	338
AloI	GAACNNNNNNTCC	2 cut(s)	277, 309
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	1 cut(s)	207
AlwI	GGATC	2 cut(s)	262, 563
Ama87I	CYCGRG	1 cut(s)	133
AoxI	GGCC	3 cut(s)	136, 227, 563
Asp718I	GGTACC	1 cut(s)	342
AspS9I	GGNCC	2 cut(s)	136, 563
AsuHPI	GGTGA	1 cut(s)	506
AsuII	TTCGAA	1 cut(s)	17
AvaI	CYCGRG	1 cut(s)	133
BalI	TGGCCA	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	2 cut(s)	212, 485
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	3 cut(s)	101, 477, 552
BglII	AGATCT	2 cut(s)	401, 453
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	1 cut(s)	340
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	136, 563
BmiI	GGNNCC	3 cut(s)	97, 344, 564
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	425, 434
BpiI	GAAGAC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	2 cut(s)	250, 566
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 339
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	2 cut(s)	250, 566
BseLI	CCNNNNNNNGG	2 cut(s)	134, 339
BseRI	GAGGAG	4 cut(s)	148, 153, 252, 497
BseYI	CCCAGC	1 cut(s)	514
BshFI	GGCC	3 cut(s)	138, 229, 565
BshNI	GGYRCC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	133
BslI	CCNNNNNNNGG	2 cut(s)	134, 339
BsmAI	GTCTC	1 cut(s)	207
BsnI	GGCC	3 cut(s)	138, 229, 565
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	133
Bsp119I	TTCGAA	1 cut(s)	17
Bsp143I	GATC	4 cut(s)	254, 401, 453, 555
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	3 cut(s)	138, 229, 565
BspLI	GGNNCC	3 cut(s)	97, 344, 564
BspPI	GGATC	2 cut(s)	262, 563
BspT104I	TTCGAA	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	342
BspTNI	GGTCTC	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	250, 566
BssMI	GATC	4 cut(s)	254, 401, 453, 555
BssT1I	CCWWGG	2 cut(s)	250, 566
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	31
BstBI	TTCGAA	1 cut(s)	17
BstDEI	CTNAG	1 cut(s)	9
BstKTI	GATC	4 cut(s)	257, 404, 456, 558
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	4 cut(s)	254, 401, 453, 555
BstMWI	GCNNNNNNNGC	2 cut(s)	144, 422
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	401, 453
BstYI	RGATCY	2 cut(s)	401, 453
BsuRI	GGCC	3 cut(s)	138, 229, 565
Cfr13I	GGNCC	2 cut(s)	136, 563
Csp6I	GTAC	2 cut(s)	308, 343
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CviAII	CATG	1 cut(s)	395
CviJI	RGCY	9 cut(s)	43, 138, 229, 260, 331, 437, 565, 572, 586
CviKI_1	RGCY	9 cut(s)	43, 138, 229, 260, 331, 437, 565, 572, 586
CviQI	GTAC	2 cut(s)	308, 343
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	4 cut(s)	256, 403, 455, 557
DpnII	GATC	4 cut(s)	254, 401, 453, 555
EaeI	YGGCCR	1 cut(s)	227
Eco130I	CCWWGG	2 cut(s)	250, 566
Eco31I	GGTCTC	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	250, 566
ErhI	CCWWGG	2 cut(s)	250, 566
FaeI	CATG	1 cut(s)	398
FaiI	YATR	5 cut(s)	73, 75, 313, 378, 396
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	3 cut(s)	101, 477, 552
GluI	GCNGC	1 cut(s)	139
GsaI	CCCAGC	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	138, 229, 565
Hin1II	CATG	1 cut(s)	398
HinfI	GANTC	3 cut(s)	19, 286, 316
HphI	GGTGA	1 cut(s)	506
Hpy188I	TCNGA	3 cut(s)	64, 212, 291
Hpy188III	TCNNGA	3 cut(s)	239, 323, 353
HpyAV	CCTTC	3 cut(s)	131, 181, 197
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	51, 299, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	144, 422
HpyF3I	CTNAG	1 cut(s)	9
Hsp92II	CATG	1 cut(s)	398
KpnI	GGTACC	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	254, 401, 453, 555
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	7 cut(s)	290, 325, 352, 412, 419, 500, 572
LweI	GCATC	2 cut(s)	425, 434
MaeI	CTAG	3 cut(s)	101, 477, 552
MaeIII	GTNAC	1 cut(s)	589
MalI	GATC	4 cut(s)	256, 403, 455, 557
MboI	GATC	4 cut(s)	254, 401, 453, 555
MboII	GAAGA	2 cut(s)	116, 284
MflI	RGATCY	2 cut(s)	401, 453
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	4 cut(s)	234, 300, 348, 445
MluNI	TGGCCA	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	47
MnlI	CCTC	8 cut(s)	120, 138, 158, 169, 174, 273, 475, 512
Mox20I	TGGCCA	1 cut(s)	229
MscI	TGGCCA	1 cut(s)	229
Msp20I	TGGCCA	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	144, 422
NdeII	GATC	4 cut(s)	254, 401, 453, 555
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	97, 344, 564
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	19, 286, 316
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	140
Psp6I	CCWGG	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	97, 344, 564
PspPI	GGNCC	2 cut(s)	136, 563
PsuI	RGATCY	2 cut(s)	401, 453
RsaI	GTAC	2 cut(s)	309, 344
RsaNI	GTAC	2 cut(s)	308, 343
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	4 cut(s)	254, 401, 453, 555
Sau96I	GGNCC	2 cut(s)	136, 563
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	4 cut(s)	173, 262, 309, 348
SfaNI	GCATC	2 cut(s)	425, 434
SfuI	TTCGAA	1 cut(s)	17
Sse9I	AATT	4 cut(s)	234, 300, 348, 445
SsiI	CCGC	1 cut(s)	139
SspMI	CTAG	3 cut(s)	101, 477, 552
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	2 cut(s)	250, 566
TaaI	ACNGT	1 cut(s)	31
TaqI	TCGA	2 cut(s)	17, 539
TasI	AATT	4 cut(s)	234, 300, 348, 445
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	3 cut(s)	19, 286, 316
TspDTI	ATGAA	1 cut(s)	308
Van91I	CCANNNNNTGG	1 cut(s)	339
XceI	RCATGY	1 cut(s)	398
XspI	CTAG	3 cut(s)	101, 477, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.