Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009437

Physical Location & Seq

Genomic Coordinates Reverse (-)

44113195 .. 44115146

Gene Structure 1952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0290700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTGAGGTTGCAGGCATTTTCAATTGCCGACTACAATCACGTGACCTTTCCCTCCTCATGCGTCATTCCTACTTCACTCCATTCCCACCGTCGATCGGTATCTTTTCCAACCACACGGACAGGTTTCCGATCACTCCCCGCTGTCAAGATAGGTAGCACTTCCGTTGCATGCGATATGGGAGGTCGCTTAAGAATGAGTGGTTTTTATGATGTTGAGCTTAAAGTACGACACTATGAGCTTGATCAGTATAGCGTAGTTAACAATGCTGTCTATGCAAATTATTGCCAGCACGCTCTTAAGGAACTTTTTGAAAGGGTTGGCCTAAATCCCGATGCAGTTGCCCAAACCGGTGAAGCATTTGCGTTGTCAACATCGTCTATGAAATTCATTGCACCTCTAAAGAGTGGAGACGAGTTTGTCATAAAGGTCAGGATGACTAATTCCTCAGCCACTCGCCTGTACTTTGAGCACTTCATTTTCAAGCTGCCAAATCTGGAGCCAATCTTGGAAGCAACAGCCACAGTAGTGTGGCTTGATAAGGACTATCGCCCTGTCCGTATTCCATCGGAGGTGATATCTAAATTTGTCCAGTTTCGTCGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002683 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010941 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033612 GO:0036211 GO:0042742 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0060548 GO:0065007 GO:0070647 GO:0070696 GO:0071704 GO:0098542 GO:0140096 GO:1901564 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arm

Protein Analysis

202

Amino Acids

22.92

Weight (kDa)

9.32

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT_2	PF13279	76 - 195	3.6e-15	Thioesterase-like superfamily
4HBT	PF03061	85 - 165	1.3e-09	Thioesterase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31890 AT4G31890 AT4G31890
fragaria_vesca	FvH4_2g40980 FvH4_2g40980
malus_domestica	MD08G1057900.v1.1 MD15G1038300.v1.1
prunus_persica	Prupe.1G392300_v2.0.a1 Prupe.1G392300_v2.0.a1
pyrus_communis	pycom08g04810 pycom15g03580
rosa_chinensis	RchiOBHm_Chr6g0299591
rosa_laevigata	RLG00000011407
rosa_multiflora	Rmu_sc0024600.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168530
rosa_rugosa	Rorug06G0290600 Rorug06G0290700
rosa_samantha	Rh6AG401600 Rh6BG410000 Rh6CG415500 Rh6DG402800
rosa_wichuraiana	Rw6G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
AciI	CCGC	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	386, 584
AcvI	CACGTG	1 cut(s)	43
AfaI	GTAC	2 cut(s)	228, 464
AfiI	CCNNNNNNNGG	1 cut(s)	97
AflII	CTTAAG	2 cut(s)	190, 299
AgeI	ACCGGT	1 cut(s)	350
AgsI	TTSAA	3 cut(s)	24, 314, 484
AleI	CACNNNNGTG	1 cut(s)	527
AluBI	AGCT	3 cut(s)	220, 241, 487
AluI	AGCT	3 cut(s)	220, 241, 487
Alw21I	GWGCWC	1 cut(s)	474
Alw26I	GTCTC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	2 cut(s)	386, 584
AsiGI	ACCGGT	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	365, 586
BbrPI	CACGTG	1 cut(s)	43
Bbv12I	GWGCWC	1 cut(s)	474
BbvCI	CCTCAGC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	1 cut(s)	574
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BclI	TGATCA	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	405
BfrI	CTTAAG	2 cut(s)	190, 299
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	501
BmsI	GCATC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	448
BsaAI	YACGTR	1 cut(s)	43
BsaBI	GATNNNNATC	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse118I	RCCGGY	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	592
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	100
BseGI	GGATG	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	592
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	1 cut(s)	474
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	324
BshTI	ACCGGT	1 cut(s)	350
BsiEI	CGRYCG	1 cut(s)	98
BsiHKAI	GWGCWC	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	351
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	405
BsmBI	CGTCTC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	3 cut(s)	95, 131, 244
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	324
BspCNI	CTCAG	1 cut(s)	461
BspLI	GGNNCC	1 cut(s)	501
BspTI	CTTAAG	2 cut(s)	190, 299
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	592
BssAI	RCCGGY	1 cut(s)	350
BssMI	GATC	3 cut(s)	95, 131, 244
Bst4CI	ACNGT	2 cut(s)	92, 526
BstAFI	CTTAAG	2 cut(s)	190, 299
BstBAI	YACGTR	1 cut(s)	43
BstC8I	GCNNGC	4 cut(s)	15, 172, 290, 294
BstDEI	CTNAG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	441
BstKTI	GATC	3 cut(s)	98, 134, 247
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	3 cut(s)	95, 131, 244
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	1 cut(s)	441
Cac8I	GCNNGC	4 cut(s)	15, 172, 290, 294
Cfr10I	RCCGGY	1 cut(s)	350
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	227, 463
CspAI	ACCGGT	1 cut(s)	350
CviAII	CATG	2 cut(s)	60, 171
CviJI	RGCY	8 cut(s)	220, 241, 324, 452, 487, 502, 521, 535
CviKI_1	RGCY	8 cut(s)	220, 241, 324, 452, 487, 502, 521, 535
CviQI	GTAC	2 cut(s)	227, 463
DdeI	CTNAG	1 cut(s)	448
DpnI	GATC	3 cut(s)	97, 133, 246
DpnII	GATC	3 cut(s)	95, 131, 244
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
Eco32I	GATATC	1 cut(s)	579
Eco72I	CACGTG	1 cut(s)	43
EcoRV	GATATC	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	2 cut(s)	63, 174
FaiI	YATR	9 cut(s)	61, 172, 179, 210, 237, 252, 276, 383, 425
FatI	CATG	2 cut(s)	59, 170
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	1 cut(s)	488
GluI	GCNGC	1 cut(s)	488
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	351
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	2 cut(s)	63, 174
HincII	GTYRAC	2 cut(s)	262, 372
HindII	GTYRAC	2 cut(s)	262, 372
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	2 cut(s)	365, 586
Hpy166II	GTNNAC	2 cut(s)	262, 372
Hpy188I	TCNGA	2 cut(s)	131, 571
Hpy188III	TCNNGA	4 cut(s)	148, 332, 433, 497
Hpy8I	GTNNAC	2 cut(s)	262, 372
Hpy99I	CGWCG	2 cut(s)	96, 603
HpyCH4III	ACNGT	2 cut(s)	92, 526
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	5 cut(s)	13, 170, 278, 338, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	448
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	2 cut(s)	63, 174
Ksp22I	TGATCA	1 cut(s)	244
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	95, 131, 244
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	8 cut(s)	108, 302, 364, 418, 473, 482, 567, 605
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	1 cut(s)	325
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	3 cut(s)	97, 133, 246
MboI	GATC	3 cut(s)	95, 131, 244
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	5 cut(s)	24, 280, 386, 442, 584
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	64, 67, 176, 408, 457, 565
MseI	TTAA	4 cut(s)	191, 222, 261, 300
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	143
MspCI	CTTAAG	2 cut(s)	190, 299
MspI	CCGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	3 cut(s)	95, 131, 244
NlaIII	CATG	2 cut(s)	63, 174
NlaIV	GGNNCC	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	43
NspI	RCATGY	1 cut(s)	174
OliI	CACNNNNGTG	1 cut(s)	527
PaeI	GCATGC	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	556
PinAI	ACCGGT	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	489
Ple19I	CGATCG	1 cut(s)	98
PmaCI	CACGTG	1 cut(s)	43
PmlI	CACGTG	1 cut(s)	43
Ppu21I	YACGTR	1 cut(s)	43
PspCI	CACGTG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	501
PvuI	CGATCG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	228, 464
RsaNI	GTAC	2 cut(s)	227, 463
RseI	CAYNNNNRTG	1 cut(s)	527
SaqAI	TTAA	4 cut(s)	191, 222, 261, 300
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	3 cut(s)	95, 131, 244
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	527
SmlI	CTYRAG	2 cut(s)	190, 299
SmoI	CTYRAG	2 cut(s)	190, 299
SphI	GCATGC	1 cut(s)	174
Sse9I	AATT	5 cut(s)	24, 280, 386, 442, 584
SsiI	CCGC	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	92, 526
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	94
TasI	AATT	5 cut(s)	24, 280, 386, 442, 584
TatI	WGTACW	1 cut(s)	462
Tru1I	TTAA	4 cut(s)	191, 222, 261, 300
Tru9I	TTAA	4 cut(s)	191, 222, 261, 300
TseFI	GTSAC	1 cut(s)	43
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	379, 398, 466
TspGWI	ACGGA	3 cut(s)	133, 154, 548
Vha464I	CTTAAG	2 cut(s)	190, 299
XapI	RAATTY	2 cut(s)	386, 584
XceI	RCATGY	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.