Prupe.1G392300_v2.0.a1

U-box domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
34929880 .. 34933224
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G392300.1

Sequence Viewer

Length: 1554 bp
ATGGCCAAGTGTCACCGAAACGACATCGGATCCGTCGTGCTAGACCGCGCTACCACCACCACGTCCGCCGGAGGAGGCGGTCACTTCCGTCTCTGGTCATCCTTCTCCGGTGCTTCATTCCGCCGGAAAATCTTCTACGCCGTCAGTTGCGGCGGCAGCTCCCGCTATCGCCACCACAACGACAAAAACAACGTCGCTCCGTCCAGTCCTCCCCCTCCCCCGGCCACTGCCACTAGATCAACGGCGACAAAAACGACGCCACAGTCGCACTCCAAAGAAAAAGAGCTGGAAAAGGTAAAACCGAAGTCCGAGAAGCTCTCGGATCTTCTGAACCTCGCGGAGTTTTCGGAGTCAGAGAACGACGCCATGACCAAGAAGAAGGTGGAGGCTTTGGATGAGCTGAAGCGCGTGGCGAAGGAATTGCAGGTCGAAGACGACTCGGCGAAGAGGAAAGAGGCGGCCAGCAGAGTGAGATTGCTCGCCAAGGAAGATGTGGAAGCCAGAGCGACGCTGGCGATGCTCGGAGTCATTCCTCCGCTCGTCGCCTTGCTCGACTCCGCCGACGTCGTTGCTCAGATCGCATCGCTCTACGCTCTGCTCAATCTCGGGATCGGCAACGATGTAAACAAGGCTGCAATTCTCCAAGCAGGGGCTGTTCACAAAATGCTTAAACTCATTGAATCCCCAAATCCTCCAGACCCATCAGTCTCAGAAGCTATAATTGCAAATTTCCTTGGCTTAAGCGCATTGGATTTGAATAAACCCATCATTGGAGCTTCAGGCGCCATACCCTTCATGGTTAAAACCCTCAAGAATTTGGACAACACAAGTAGCCCTCAAGCTAAGCAAGATGCCTTGAGAGCTCTCTACAACCTTTCAATCTTCCCATCCAATATTTCGTTCATATTGGAAACTGATTTGATCCCATTTTTCCTGAATTCGCTTGGAGACATGGAAGTGAGTGAAAGAATCCTTGCAATTCTAAGCAACATGGTAACTGTCCCCGAAGGTCGAAAAGCAATTAGCAGTGTCCGGGATGCATTCCCAATATTGGTCGATGCATTGAATTGGAACGATTCGCCGGGGTGTCAAGAGAAGGCATCCTACATTTTGATGGTGATGGCACACAAGGCATTTGGGGATAGGCAAGCCATGATCGAGGCAGGAATGGTATCGGCATTGCTTGAATTAACGCTTTTGGGTAGCACATTGGCACAGAAGAGAGCCTCAAGGATCTTGGAGTGTTTGAGAGTGGATAAAGGAAAGCAGGTTTCACAAAGCTTTGGTGGGAGTATGGGTGCAGCGGTTTCTGCTCCCATTTGTGGCTCTTCGTCGTCTTCTACAAACCCGAACATGGGTTCCAAGGAGTGTTTGGAAGAGGAGGAGGACATGATGAGTGAGGAGAAGAAAGCCGTGAAGCAATTAGTGCAACAGAGTTTGCAAAACAACATGAGGAGGATCGTGAAGAGGGCCAATTTGCCGCAAGATTTCGTCCCATCGGATCATTTCAAGTCACTCACCTCAAGTTCAACTTCAAAGAGCTTGCCATTTTGA

Protein Analysis

518

Amino Acids

55.81

Weight (kDa)

8.7

Isoelectric Point (pI)

58.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 262, 704
AatII GACGTC 1 cut(s) 567
Acc36I ACCTGC 2 cut(s) 415, 1258
AccB1I GGYRCC 1 cut(s) 782
AccBSI CCGCTC 1 cut(s) 538
AccII CGCG 3 cut(s) 48, 338, 408
AclWI GGATC 8 cut(s) 24, 37, 330, 617, 916, 1241, 1466, 1509
AcoI YGGCCR 3 cut(s) 3, 222, 459
AcsI RAATTY 3 cut(s) 727, 814, 937
AcuI CTGAAG 2 cut(s) 422, 762
AcyI GRCGYC 4 cut(s) 257, 363, 564, 783
AfiI CCNNNNNNNGG 7 cut(s) 220, 649, 770, 1051, 1322, 1354, 1355
AflII CTTAAG 1 cut(s) 739
AgsI TTSAA 8 cut(s) 680, 757, 879, 1066, 1187, 1510, 1530, 1536
AjiI CACGTC 1 cut(s) 63
AjuI GAANNNNNNNTTGG 2 cut(s) 884, 916
AloI GAACNNNNNNTCC 2 cut(s) 1343, 1375
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 3 cut(s) 95, 712, 942
AlwI GGATC 8 cut(s) 24, 37, 330, 617, 916, 1241, 1466, 1509
AlwNI CAGNNNCTG 1 cut(s) 653
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 4 cut(s) 3, 222, 459, 1470
ApeKI GCWGC 3 cut(s) 156, 632, 1301
ApoI RAATTY 3 cut(s) 727, 814, 937
ArsI GACNNNNNNTTYG 2 cut(s) 177, 209
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 4 cut(s) 50, 408, 746, 785
AspS9I GGNCC 1 cut(s) 1470
AsuC2I CCSGG 3 cut(s) 221, 1034, 1083
AsuHPI GGTGA 3 cut(s) 5, 1129, 1510
AvaI CYCGRG 1 cut(s) 605
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 29
BanI GGYRCC 1 cut(s) 782
BanII GRGCYC 1 cut(s) 865
BarI GAAGNNNNNNTAC 2 cut(s) 1088, 1120
BbsI GAAGAC 2 cut(s) 438, 1329
Bbv12I GWGCWC 1 cut(s) 865
BbvI GCAGC 3 cut(s) 168, 619, 1313
BccI CCATC 6 cut(s) 709, 773, 895, 1108, 1114, 1504
BceAI ACGGC 3 cut(s) 125, 258, 1397
BcgI CGANNNNNNTGC 4 cut(s) 403, 437, 551, 585
BcnI CCSGG 3 cut(s) 221, 1034, 1083
BcoDI GTCTC 3 cut(s) 95, 712, 942
BfaI CTAG 2 cut(s) 41, 234
BfoI RGCGCY 1 cut(s) 786
BfrI CTTAAG 1 cut(s) 739
BfuAI ACCTGC 2 cut(s) 415, 1258
BisI GCNGC 7 cut(s) 151, 154, 157, 459, 633, 1302, 1481
BlpI GCTNAGC 1 cut(s) 843
BlsI GCNGC 7 cut(s) 152, 155, 158, 460, 634, 1303, 1482
Bme1390I CCNGG 3 cut(s) 221, 1034, 1083
BmeT110I CYCGRG 1 cut(s) 605
BmgBI CACGTC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 1470
BmiI GGNNCC 3 cut(s) 31, 784, 1360
BmrFI CCNGG 3 cut(s) 221, 1034, 1083
BmsI GCATC 6 cut(s) 507, 590, 841, 1027, 1048, 1109
BpiI GAAGAC 2 cut(s) 438, 1329
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BpmI CTGGAG 1 cut(s) 678
Bpu1102I GCTNAGC 1 cut(s) 843
BpuEI CTTGAG 5 cut(s) 794, 822, 877, 1213, 1507
BpuMI CCSGG 3 cut(s) 221, 1034, 1083
BsaHI GRCGYC 4 cut(s) 257, 363, 564, 783
BsaJI CCNNGG 5 cut(s) 219, 483, 733, 1082, 1362
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 2 cut(s) 1282, 1312
Bsc4I CCNNNNNNNGG 7 cut(s) 220, 649, 770, 1051, 1322, 1354, 1355
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 1178
BseDI CCNNGG 5 cut(s) 219, 483, 733, 1082, 1362
BseGI GGATG 5 cut(s) 98, 400, 887, 1042, 1100
BseLI CCNNNNNNNGG 7 cut(s) 220, 649, 770, 1051, 1322, 1354, 1355
BseMI GCAATG 1 cut(s) 1178
BseMII CTCAG 2 cut(s) 587, 723
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 5 cut(s) 87, 1394, 1397, 1415, 1468
BseXI GCAGC 3 cut(s) 168, 619, 1313
BsgI GTGCAG 1 cut(s) 1320
Bsh1236I CGCG 3 cut(s) 48, 338, 408
BshFI GGCC 4 cut(s) 5, 224, 461, 1472
BshNI GGYRCC 1 cut(s) 782
BsiHKAI GWGCWC 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 6 cut(s) 69, 108, 124, 221, 1033, 1082
BslFI GGGAC 2 cut(s) 986, 1478
BslI CCNNNNNNNGG 7 cut(s) 220, 649, 770, 1051, 1322, 1354, 1355
BsmAI GTCTC 3 cut(s) 95, 712, 942
BsmBI CGTCTC 1 cut(s) 95
BsmFI GGGAC 2 cut(s) 986, 1478
BsmI GAATGC 1 cut(s) 1040
BsnI GGCC 4 cut(s) 5, 224, 461, 1472
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 865
Bsp1720I GCTNAGC 1 cut(s) 843
BspANI GGCC 4 cut(s) 5, 224, 461, 1472
BspCNI CTCAG 2 cut(s) 586, 722
BspFNI CGCG 3 cut(s) 48, 338, 408
BspLI GGNNCC 3 cut(s) 31, 784, 1360
BspMI ACCTGC 2 cut(s) 415, 1258
BspPI GGATC 8 cut(s) 24, 37, 330, 617, 916, 1241, 1466, 1509
BspQI GCTCTTC 1 cut(s) 1333
BspT107I GGYRCC 1 cut(s) 782
BspTI CTTAAG 1 cut(s) 739
BsrBI CCGCTC 1 cut(s) 538
BsrDI GCAATG 1 cut(s) 1178
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 5 cut(s) 219, 483, 733, 1082, 1362
BssNI GRCGYC 4 cut(s) 257, 363, 564, 783
BssT1I CCWWGG 3 cut(s) 483, 733, 1362
Bst4CI ACNGT 2 cut(s) 264, 1000
Bst6I CTCTTC 5 cut(s) 440, 1214, 1333, 1371, 1460
BstACI GRCGYC 4 cut(s) 257, 363, 564, 783
BstAFI CTTAAG 1 cut(s) 739
BstAPI GCANNNNNTGC 1 cut(s) 1426
BstC8I GCNNGC 5 cut(s) 463, 480, 513, 1149, 1544
BstDEI CTNAG 4 cut(s) 573, 709, 843, 983
BstF5I GGATG 5 cut(s) 98, 400, 887, 1042, 1100
BstFNI CGCG 3 cut(s) 48, 338, 408
BstH2I RGCGCY 1 cut(s) 786
BstHHI GCGC 4 cut(s) 50, 408, 746, 785
BstMAI GTCTC 3 cut(s) 95, 712, 942
BstSCI CCNGG 3 cut(s) 219, 1032, 1081
BstUI CGCG 3 cut(s) 48, 338, 408
BstV1I GCAGC 3 cut(s) 168, 619, 1313
BstV2I GAAGAC 2 cut(s) 438, 1329
BstX2I RGATCY 3 cut(s) 29, 322, 1233
BstYI RGATCY 3 cut(s) 29, 322, 1233
BsuRI GGCC 4 cut(s) 5, 224, 461, 1472
BtgZI GCGATG 2 cut(s) 530, 567
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 5 cut(s) 98, 400, 887, 1042, 1100
BtsI GCAGTG 2 cut(s) 225, 1033
BtsIMutI CAGTG 2 cut(s) 225, 1033
BveI ACCTGC 2 cut(s) 415, 1258
Cac8I GCNNGC 5 cut(s) 463, 480, 513, 1149, 1544
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 4 cut(s) 50, 408, 746, 785
Cfr13I GGNCC 1 cut(s) 1470
CseI GACGC 3 cut(s) 265, 371, 517
CviAII CATG 8 cut(s) 367, 796, 952, 991, 1153, 1354, 1390, 1450
DdeI CTNAG 4 cut(s) 573, 709, 843, 983
DinI GGCGCC 1 cut(s) 784
DrdI GACNNNNNNGTC 2 cut(s) 262, 704
DseDI GACNNNNNNGTC 2 cut(s) 262, 704
EaeI YGGCCR 3 cut(s) 3, 222, 459
Eam1104I CTCTTC 5 cut(s) 440, 1214, 1333, 1371, 1460
EarI CTCTTC 5 cut(s) 440, 1214, 1333, 1371, 1460
EciI GGCGGA 3 cut(s) 55, 110, 547
Ecl136II GAGCTC 1 cut(s) 863
Eco130I CCWWGG 3 cut(s) 483, 733, 1362
Eco24I GRGCYC 1 cut(s) 865
Eco53kI GAGCTC 1 cut(s) 863
Eco57I CTGAAG 2 cut(s) 422, 762
Eco88I CYCGRG 1 cut(s) 605
EcoICRI GAGCTC 1 cut(s) 863
EcoRI GAATTC 1 cut(s) 937
EcoT14I CCWWGG 3 cut(s) 483, 733, 1362
EcoT22I ATGCAT 2 cut(s) 1042, 1063
EcoT38I GRGCYC 1 cut(s) 865
EgeI GGCGCC 1 cut(s) 784
EheI GGCGCC 1 cut(s) 784
ErhI CCWWGG 3 cut(s) 483, 733, 1362
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 8 cut(s) 370, 799, 955, 994, 1156, 1357, 1393, 1453
FalI AAGNNNNNCTT 2 cut(s) 1516, 1548
FaqI GGGAC 2 cut(s) 986, 1478
FatI CATG 8 cut(s) 366, 795, 951, 990, 1152, 1353, 1389, 1449
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 7 cut(s) 151, 154, 157, 459, 633, 1302, 1481
FokI GGATG 5 cut(s) 85, 407, 874, 1049, 1087
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 7 cut(s) 151, 154, 157, 459, 633, 1302, 1481
FspBI CTAG 2 cut(s) 41, 234
GlaI GCGC 4 cut(s) 49, 407, 745, 784
GluI GCNGC 7 cut(s) 151, 154, 157, 459, 633, 1302, 1481
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 786
HaeIII GGCC 4 cut(s) 5, 224, 461, 1472
HapII CCGG 6 cut(s) 69, 108, 124, 221, 1033, 1082
HgaI GACGC 3 cut(s) 265, 371, 517
HhaI GCGC 4 cut(s) 50, 408, 746, 785
Hin1I GRCGYC 4 cut(s) 257, 363, 564, 783
Hin1II CATG 8 cut(s) 370, 799, 955, 994, 1156, 1357, 1393, 1453
Hin6I GCGC 4 cut(s) 48, 406, 744, 783
HinP1I GCGC 4 cut(s) 48, 406, 744, 783
HindIII AAGCTT 1 cut(s) 1279
HinfI GANTC 7 cut(s) 350, 437, 525, 554, 680, 969, 1076
HpaII CCGG 6 cut(s) 69, 108, 124, 221, 1033, 1082
HphI GGTGA 3 cut(s) 5, 1129, 1510
Hpy166II GTNNAC 2 cut(s) 625, 658
Hpy188III TCNNGA 6 cut(s) 607, 695, 811, 934, 1091, 1462
Hpy8I GTNNAC 2 cut(s) 625, 658
Hpy99I CGWCG 9 cut(s) 38, 197, 259, 365, 511, 545, 566, 569, 1336
HpyAV CCTTC 6 cut(s) 112, 373, 409, 802, 1001, 1090
HpyCH4III ACNGT 2 cut(s) 264, 1000
HpyCH4IV ACGT 3 cut(s) 62, 192, 564
HpyCH4V TGCA 9 cut(s) 424, 635, 725, 977, 1040, 1061, 1301, 1429, 1441
HpyF3I CTNAG 4 cut(s) 573, 709, 843, 983
HpySE526I ACGT 3 cut(s) 62, 192, 564
Hsp92I GRCGYC 4 cut(s) 257, 363, 564, 783
Hsp92II CATG 8 cut(s) 370, 799, 955, 994, 1156, 1357, 1393, 1453
HspAI GCGC 4 cut(s) 48, 406, 744, 783
KasI GGCGCC 1 cut(s) 782
LguI GCTCTTC 1 cut(s) 1333
LmnI GCTCC 4 cut(s) 164, 202, 773, 1318
Lsp1109I GCAGC 3 cut(s) 168, 619, 1313
LweI GCATC 6 cut(s) 507, 590, 841, 1027, 1048, 1109
MaeI CTAG 2 cut(s) 41, 234
MaeII ACGT 3 cut(s) 62, 192, 564
MaeIII GTNAC 4 cut(s) 11, 80, 994, 1512
MbiI CCGCTC 1 cut(s) 538
MflI RGATCY 3 cut(s) 29, 322, 1233
MhlI GDGCHC 1 cut(s) 865
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 783
MlyI GAGTC 4 cut(s) 359, 431, 534, 548
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 1042, 1063
MroXI GAANNNNTTC 1 cut(s) 131
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 669, 740, 801, 1190
MslI CAYNNNNRTG 2 cut(s) 956, 1112
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1304
MspCI CTTAAG 1 cut(s) 739
MspI CCGG 6 cut(s) 69, 108, 124, 221, 1033, 1082
MspR9I CCNGG 3 cut(s) 221, 1034, 1083
Mva1269I GAATGC 1 cut(s) 1040
MvnI CGCG 3 cut(s) 48, 338, 408
NarI GGCGCC 1 cut(s) 783
NciI CCSGG 3 cut(s) 221, 1034, 1083
NlaIII CATG 8 cut(s) 370, 799, 955, 994, 1156, 1357, 1393, 1453
NlaIV GGNNCC 3 cut(s) 31, 784, 1360
NmeAIII GCCGAG 1 cut(s) 419
NmuCI GTSAC 3 cut(s) 11, 80, 1512
NsiI ATGCAT 2 cut(s) 1042, 1063
PciSI GCTCTTC 1 cut(s) 1333
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 549, 558
PctI GAATGC 1 cut(s) 1040
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 3 cut(s) 680, 969, 1076
PfoI TCCNGGA 1 cut(s) 1032
PkrI GCNGC 7 cut(s) 152, 155, 158, 460, 634, 1303, 1482
PleI GAGTC 4 cut(s) 358, 431, 533, 548
PluTI GGCGCC 1 cut(s) 786
PpsI GAGTC 4 cut(s) 358, 431, 533, 548
Psp124BI GAGCTC 1 cut(s) 865
PspN4I GGNNCC 3 cut(s) 31, 784, 1360
PspPI GGNCC 1 cut(s) 1470
PstNI CAGNNNCTG 1 cut(s) 653
PsuI RGATCY 3 cut(s) 29, 322, 1233
RseI CAYNNNNRTG 2 cut(s) 956, 1112
SacI GAGCTC 1 cut(s) 865
SapI GCTCTTC 1 cut(s) 1333
SaqAI TTAA 4 cut(s) 669, 740, 801, 1190
SatI GCNGC 7 cut(s) 151, 154, 157, 459, 633, 1302, 1481
Sau96I GGNCC 1 cut(s) 1470
SchI GAGTC 4 cut(s) 359, 431, 534, 548
ScrFI CCNGG 3 cut(s) 221, 1034, 1083
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 6 cut(s) 507, 590, 841, 1027, 1048, 1109
SfoI GGCGCC 1 cut(s) 784
SmiMI CAYNNNNRTG 2 cut(s) 956, 1112
SmlI CTYRAG 6 cut(s) 739, 809, 837, 856, 1228, 1522
SmoI CTYRAG 6 cut(s) 739, 809, 837, 856, 1228, 1522
SspDI GGCGCC 1 cut(s) 782
SspI AATATT 2 cut(s) 895, 1050
SspMI CTAG 2 cut(s) 41, 234
SstI GAGCTC 1 cut(s) 865
StyD4I CCNGG 3 cut(s) 219, 1032, 1081
StyI CCWWGG 3 cut(s) 483, 733, 1362
TaaI ACNGT 2 cut(s) 264, 1000
TaiI ACGT 3 cut(s) 65, 195, 567
TaqI TCGA 5 cut(s) 429, 552, 1012, 1056, 1158
TauI GCSGC 4 cut(s) 153, 156, 461, 1483
TfiI GAWTC 3 cut(s) 680, 969, 1076
Tru1I TTAA 4 cut(s) 669, 740, 801, 1190
Tru9I TTAA 4 cut(s) 669, 740, 801, 1190
TscAI CASTG 2 cut(s) 232, 1033
TseFI GTSAC 3 cut(s) 11, 80, 1512
TseI GCWGC 3 cut(s) 156, 632, 1301
Tsp45I GTSAC 3 cut(s) 11, 80, 1512
TspDTI ATGAA 3 cut(s) 105, 784, 892
TspGWI ACGGA 3 cut(s) 22, 77, 189
TspRI CASTG 2 cut(s) 232, 1033
Vha464I CTTAAG 1 cut(s) 739
XapI RAATTY 3 cut(s) 727, 814, 937
XcmI CCANNNNNNNNNTGG 5 cut(s) 379, 490, 508, 793, 1369
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 2 cut(s) 41, 234
ZraI GACGTC 1 cut(s) 565
Zsp2I ATGCAT 2 cut(s) 1042, 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.