Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Forward (+)

59912312 .. 59915500

Gene Structure 3189 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG401500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCAGTTCACTGCCGACGTGTATCACTCCGATTGGCTGGAGCCATGTCACCCGACGTGCTGCTCGCTCTCCAAACAGAAAAAATCACACAGAAGAGTAGACCTGGGAGACCCCAGATCGATCGAAACCCCCAGATTGCTGTAAAATCCATAACCGTGGCTTCCTCAGCGTCTCCAAGTTTGACGCGAAGAAAACCCTCCTCTTCTTCTTATTCTTCTTCGTCCACAGAGCCGGGTCGGGTCGTGGGAAGAGTAGTTATACCCAGCCGGGCTTCGGAGCCTCAGTTTCCGTTTTGGCAACAGACCTGGTTCATAGCCTTACTCCTGGCCATGGCCATGGGCTTTCTCTGCTTAGCTGTCTTCCTCTTCCTCGGCCTCGACCTCGACACAGGCTACGCGGCCACCACCCCTACCTCAGAGGGCGTCGAGATCACATACGGAACTGTGCTGAAGCTGATGCACGAGAGGACCAAGTTTCGGTTGCACTCGCACGACGTGCCGTATGGCTCTGGCAGTGGCCAGCAGTCCGTCACTGGATTTCCAAATGTCGACGATGCTAATAGCTACTGGATTGTTAGACCTCAGCTTGAAACATCTGCCAGGCAAGGTGACAGCATTCCGAGTGGGACGATCGTCAGGTTGCAACACATGAGGACTAGGAAATGGCTGCACAGCCATTTGCACGCATCCCCTATATCAGGCAACCAAGAGATAAGCTGCTTTGGGGGAGAACATGAATCTGATACTGGTGATCACTGGAGGGTTATGATTGAAGGAAGTGGGAAGACCTGGAAGCAAGATCAAAGGGTTCGACTTCAGCATGTTGACACTGGTGCTTACCTACACAGTCATGACAAGAAATACCAACGCATAGCTGGGGGACAGCAGGAGGTGAGAACAATGAAATTCAACCCTATTTATTTAATACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

310

Amino Acids

34.56

Weight (kDa)

9.67

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	174 - 300	1.5e-12	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	100, 549
AccII	CGCG	2 cut(s)	187, 398
AciI	CCGC	1 cut(s)	398
AcoI	YGGCCR	4 cut(s)	327, 333, 399, 517
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	2 cut(s)	470, 800
AcyI	GRCGYC	1 cut(s)	423
AdeI	CACNNNGTG	1 cut(s)	496
AfiI	CCNNNNNNNGG	4 cut(s)	274, 331, 477, 698
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	3 cut(s)	590, 773, 910
AjiI	CACGTC	3 cut(s)	20, 58, 496
AjnI	CCWGG	5 cut(s)	103, 305, 324, 599, 788
AluBI	AGCT	6 cut(s)	356, 454, 564, 586, 717, 875
AluI	AGCT	6 cut(s)	356, 454, 564, 586, 717, 875
Alw26I	GTCTC	2 cut(s)	103, 177
AoxI	GGCC	5 cut(s)	327, 333, 373, 399, 517
ApeKI	GCWGC	3 cut(s)	61, 667, 717
ApoI	RAATTY	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	468
AsuC2I	CCSGG	2 cut(s)	234, 269
AsuHPI	GGTGA	4 cut(s)	42, 620, 761, 904
AvaII	GGWCC	1 cut(s)	468
BalI	TGGCCA	3 cut(s)	329, 335, 519
BauI	CACGAG	1 cut(s)	461
BbsI	GAAGAC	2 cut(s)	352, 791
BbvCI	CCTCAGC	2 cut(s)	166, 582
BbvI	GCAGC	3 cut(s)	48, 654, 704
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	5 cut(s)	105, 307, 326, 601, 790
BclI	TGATCA	1 cut(s)	751
BcnI	CCSGG	2 cut(s)	234, 269
BcoDI	GTCTC	2 cut(s)	103, 177
BfaI	CTAG	1 cut(s)	657
BisI	GCNGC	4 cut(s)	62, 399, 668, 718
BlpI	GCTNAGC	1 cut(s)	352
BlsI	GCNGC	4 cut(s)	63, 400, 669, 719
Bme1390I	CCNGG	7 cut(s)	105, 234, 269, 307, 326, 601, 790
Bme18I	GGWCC	1 cut(s)	468
BmgBI	CACGTC	3 cut(s)	20, 58, 496
BmgT120I	GGNCC	1 cut(s)	468
BmiI	GGNNCC	2 cut(s)	43, 279
BmrFI	CCNGG	7 cut(s)	105, 234, 269, 307, 326, 601, 790
BmsI	GCATC	3 cut(s)	447, 544, 695
BoxI	GACNNNNGTC	1 cut(s)	632
BpiI	GAAGAC	2 cut(s)	352, 791
BpmI	CTGGAG	2 cut(s)	60, 778
Bpu10I	CCTNAGC	2 cut(s)	166, 582
Bpu1102I	GCTNAGC	1 cut(s)	352
BpuMI	CCSGG	2 cut(s)	234, 269
Bsa29I	ATCGAT	1 cut(s)	120
BsaHI	GRCGYC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	5 cut(s)	104, 156, 330, 336, 370
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	4 cut(s)	274, 331, 477, 698
Bse1I	ACTGG	5 cut(s)	538, 572, 751, 761, 835
BseBI	CCWGG	5 cut(s)	105, 307, 326, 601, 790
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	5 cut(s)	104, 156, 330, 336, 370
BseGI	GGATG	1 cut(s)	686
BseLI	CCNNNNNNNGG	4 cut(s)	274, 331, 477, 698
BseMII	CTCAG	4 cut(s)	180, 296, 429, 596
BseNI	ACTGG	5 cut(s)	538, 572, 751, 761, 835
BseRI	GAGGAG	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	48, 654, 704
BseYI	CCCAGC	2 cut(s)	263, 875
BsgI	GTGCAG	1 cut(s)	653
Bsh1236I	CGCG	2 cut(s)	187, 398
Bsh1285I	CGRYCG	2 cut(s)	124, 633
BshFI	GGCC	5 cut(s)	329, 335, 375, 401, 519
BshVI	ATCGAT	1 cut(s)	120
BsiEI	CGRYCG	2 cut(s)	124, 633
BsiSI	CCGG	2 cut(s)	233, 268
BslFI	GGGAC	2 cut(s)	640, 894
BslI	CCNNNNNNNGG	4 cut(s)	274, 331, 477, 698
BsmAI	GTCTC	2 cut(s)	103, 177
BsmBI	CGTCTC	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	640, 894
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	5 cut(s)	329, 335, 375, 401, 519
Bso31I	GGTCTC	1 cut(s)	103
Bsp143I	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
Bsp1720I	GCTNAGC	1 cut(s)	352
Bsp19I	CCATGG	2 cut(s)	330, 336
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	5 cut(s)	329, 335, 375, 401, 519
BspCNI	CTCAG	4 cut(s)	179, 295, 428, 595
BspDI	ATCGAT	1 cut(s)	120
BspFNI	CGCG	2 cut(s)	187, 398
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	2 cut(s)	43, 279
BspTNI	GGTCTC	1 cut(s)	103
BsrI	ACTGG	5 cut(s)	538, 572, 751, 761, 835
BssECI	CCNNGG	5 cut(s)	104, 156, 330, 336, 370
BssMI	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
BssNI	GRCGYC	1 cut(s)	423
BssSI	CACGAG	1 cut(s)	461
BssT1I	CCWWGG	2 cut(s)	330, 336
Bst2BI	CACGAG	1 cut(s)	461
Bst2UI	CCWGG	5 cut(s)	105, 307, 326, 601, 790
Bst4CI	ACNGT	3 cut(s)	157, 445, 848
Bst6I	CTCTTC	4 cut(s)	89, 208, 244, 371
BstACI	GRCGYC	1 cut(s)	423
BstAPI	GCANNNNNTGC	1 cut(s)	496
BstC8I	GCNNGC	3 cut(s)	66, 521, 684
BstDEI	CTNAG	5 cut(s)	166, 282, 352, 415, 582
BstDSI	CCRYGG	3 cut(s)	156, 330, 336
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	1 cut(s)	686
BstFNI	CGCG	2 cut(s)	187, 398
BstKTI	GATC	6 cut(s)	120, 124, 432, 633, 754, 802
BstMAI	GTCTC	2 cut(s)	103, 177
BstMBI	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
BstMCI	CGRYCG	2 cut(s)	124, 633
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 348, 496
BstNI	CCWGG	5 cut(s)	105, 307, 326, 601, 790
BstNSI	RCATGY	1 cut(s)	824
BstPAI	GACNNNNGTC	1 cut(s)	632
BstSCI	CCNGG	7 cut(s)	103, 232, 267, 305, 324, 599, 788
BstUI	CGCG	2 cut(s)	187, 398
BstV1I	GCAGC	3 cut(s)	48, 654, 704
BstV2I	GAAGAC	2 cut(s)	352, 791
BstXI	CCANNNNNNTGG	2 cut(s)	157, 337
Bsu15I	ATCGAT	1 cut(s)	120
BsuRI	GGCC	5 cut(s)	329, 335, 375, 401, 519
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	3 cut(s)	156, 330, 336
BtrI	CACGTC	3 cut(s)	20, 58, 496
BtsCI	GGATG	1 cut(s)	686
BtsI	GCAGTG	2 cut(s)	10, 520
BtsIMutI	CAGTG	6 cut(s)	10, 520, 531, 754, 828, 928
Cac8I	GCNNGC	3 cut(s)	66, 521, 684
CciI	TCATGA	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	468
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	3 cut(s)	159, 193, 412
CsiI	ACCWGGT	1 cut(s)	305
CviAII	CATG	7 cut(s)	46, 331, 337, 649, 734, 821, 851
DdeI	CTNAG	5 cut(s)	166, 282, 352, 415, 582
DpnI	GATC	6 cut(s)	119, 123, 431, 632, 753, 801
DpnII	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
DraIII	CACNNNGTG	1 cut(s)	496
EaeI	YGGCCR	4 cut(s)	327, 333, 399, 517
Eam1104I	CTCTTC	4 cut(s)	89, 208, 244, 371
EarI	CTCTTC	4 cut(s)	89, 208, 244, 371
Eco130I	CCWWGG	2 cut(s)	330, 336
Eco31I	GGTCTC	1 cut(s)	103
Eco47I	GGWCC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	470, 800
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoRII	CCWGG	5 cut(s)	103, 305, 324, 599, 788
EcoT14I	CCWWGG	2 cut(s)	330, 336
ErhI	CCWWGG	2 cut(s)	330, 336
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	7 cut(s)	49, 334, 340, 652, 737, 824, 854
FaqI	GGGAC	2 cut(s)	640, 894
FatI	CATG	7 cut(s)	45, 330, 336, 648, 733, 820, 850
FbaI	TGATCA	1 cut(s)	751
FblI	GTMKAC	2 cut(s)	100, 549
Fnu4HI	GCNGC	4 cut(s)	62, 399, 668, 718
FokI	GGATG	1 cut(s)	673
Fsp4HI	GCNGC	4 cut(s)	62, 399, 668, 718
FspBI	CTAG	1 cut(s)	657
GluI	GCNGC	4 cut(s)	62, 399, 668, 718
GsaI	CCCAGC	2 cut(s)	267, 879
GsuI	CTGGAG	2 cut(s)	60, 778
HaeIII	GGCC	5 cut(s)	329, 335, 375, 401, 519
HapII	CCGG	2 cut(s)	233, 268
HgaI	GACGC	3 cut(s)	159, 193, 412
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	7 cut(s)	49, 334, 340, 652, 737, 824, 854
HincII	GTYRAC	2 cut(s)	550, 826
HindII	GTYRAC	2 cut(s)	550, 826
HinfI	GANTC	1 cut(s)	737
HpaII	CCGG	2 cut(s)	233, 268
HphI	GGTGA	4 cut(s)	42, 620, 761, 904
Hpy166II	GTNNAC	5 cut(s)	10, 101, 225, 550, 826
Hpy188I	TCNGA	5 cut(s)	32, 277, 418, 621, 742
Hpy188III	TCNNGA	2 cut(s)	427, 851
Hpy8I	GTNNAC	5 cut(s)	10, 101, 225, 550, 826
Hpy99I	CGWCG	5 cut(s)	21, 59, 428, 497, 554
HpyAV	CCTTC	1 cut(s)	767
HpyCH4III	ACNGT	3 cut(s)	157, 445, 848
HpyCH4IV	ACGT	3 cut(s)	19, 57, 495
HpyCH4V	TGCA	5 cut(s)	460, 484, 643, 670, 682
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 348, 496
HpyF3I	CTNAG	5 cut(s)	166, 282, 352, 415, 582
HpySE526I	ACGT	3 cut(s)	19, 57, 495
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	7 cut(s)	49, 334, 340, 652, 737, 824, 854
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
LmnI	GCTCC	2 cut(s)	41, 277
Lsp1109I	GCAGC	3 cut(s)	48, 654, 704
LweI	GCATC	3 cut(s)	447, 544, 695
MabI	ACCWGGT	1 cut(s)	305
MaeI	CTAG	1 cut(s)	657
MaeII	ACGT	3 cut(s)	19, 57, 495
MaeIII	GTNAC	3 cut(s)	48, 529, 608
MalI	GATC	6 cut(s)	119, 123, 431, 632, 753, 801
MboI	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
MlsI	TGGCCA	3 cut(s)	329, 335, 519
MluCI	AATT	1 cut(s)	905
MluNI	TGGCCA	3 cut(s)	329, 335, 519
Mox20I	TGGCCA	3 cut(s)	329, 335, 519
MscI	TGGCCA	3 cut(s)	329, 335, 519
MseI	TTAA	1 cut(s)	923
MslI	CAYNNNNRTG	3 cut(s)	155, 335, 849
Msp20I	TGGCCA	3 cut(s)	329, 335, 519
MspI	CCGG	2 cut(s)	233, 268
MspR9I	CCNGG	7 cut(s)	105, 234, 269, 307, 326, 601, 790
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	5 cut(s)	105, 307, 326, 601, 790
MvnI	CGCG	2 cut(s)	187, 398
MwoI	GCNNNNNNNGC	3 cut(s)	167, 348, 496
NciI	CCSGG	2 cut(s)	234, 269
NcoI	CCATGG	2 cut(s)	330, 336
NdeII	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
NlaIII	CATG	7 cut(s)	49, 334, 340, 652, 737, 824, 854
NlaIV	GGNNCC	2 cut(s)	43, 279
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	3 cut(s)	48, 529, 608
NspI	RCATGY	1 cut(s)	824
PagI	TCATGA	1 cut(s)	850
PctI	GAATGC	1 cut(s)	615
PfeI	GAWTC	1 cut(s)	737
PkrI	GCNGC	4 cut(s)	63, 400, 669, 719
Ple19I	CGATCG	2 cut(s)	124, 633
PshAI	GACNNNNGTC	1 cut(s)	632
Psp6I	CCWGG	5 cut(s)	103, 305, 324, 599, 788
PspFI	CCCAGC	2 cut(s)	263, 875
PspGI	CCWGG	5 cut(s)	103, 305, 324, 599, 788
PspN4I	GGNNCC	2 cut(s)	43, 279
PspPI	GGNCC	1 cut(s)	468
PvuI	CGATCG	2 cut(s)	124, 633
RseI	CAYNNNNRTG	3 cut(s)	155, 335, 849
SalI	GTCGAC	1 cut(s)	548
SaqAI	TTAA	1 cut(s)	923
SatI	GCNGC	4 cut(s)	62, 399, 668, 718
Sau3AI	GATC	6 cut(s)	117, 121, 429, 630, 751, 799
Sau96I	GGNCC	1 cut(s)	468
ScrFI	CCNGG	7 cut(s)	105, 234, 269, 307, 326, 601, 790
SexAI	ACCWGGT	1 cut(s)	305
SfaNI	GCATC	3 cut(s)	447, 544, 695
SinI	GGWCC	1 cut(s)	468
SmiMI	CAYNNNNRTG	3 cut(s)	155, 335, 849
Sse9I	AATT	1 cut(s)	905
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	657
StyD4I	CCNGG	7 cut(s)	103, 232, 267, 305, 324, 599, 788
StyI	CCWWGG	2 cut(s)	330, 336
TaaI	ACNGT	3 cut(s)	157, 445, 848
TaiI	ACGT	3 cut(s)	22, 60, 498
TaqI	TCGA	7 cut(s)	120, 124, 378, 384, 426, 549, 811
TasI	AATT	1 cut(s)	905
TauI	GCSGC	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	1 cut(s)	923
Tru9I	TTAA	1 cut(s)	923
TscAI	CASTG	5 cut(s)	17, 520, 538, 761, 835
TseFI	GTSAC	3 cut(s)	48, 529, 608
TseI	GCWGC	3 cut(s)	61, 667, 717
Tsp45I	GTSAC	3 cut(s)	48, 529, 608
TspDTI	ATGAA	3 cut(s)	301, 750, 917
TspGWI	ACGGA	3 cut(s)	279, 453, 517
TspRI	CASTG	5 cut(s)	17, 520, 538, 761, 835
VpaK11BI	GGWCC	1 cut(s)	468
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	1 cut(s)	905
XceI	RCATGY	1 cut(s)	824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmiI	GTMKAC	2 cut(s)	100, 549
XspI	CTAG	1 cut(s)	657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.