Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Forward (+)

4636959 .. 4638639

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1057800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGGATCTGGGCAGGTCACGTACGGCACCGTATTGAAGCTCAGGCACGAGAAGACCAAGTTTCGCTTGCATTCACACGACGTGCCGTATGGCTCTGGTAGCGGTCAGCAGTCTGTCACTGGTTTCCCCAATGTCGACGACGCTAATAGTTACTGGATTGTTAAACCTGAGCTGGAAACTTCTGCCAAGCAAGGCGATAGCATTCCGAGCGGGACAATCATCAGGTTGCAGCACATGAAGACTAGGAAATGGCTGCACAGCCATTTGCATGCATCCCCCATTTCTAGCAACCAAGAGGTGAGCTGCTTCGGGGGAGAAAATGAATCTGATACCGGTGATCACTGGAGGCTGACAATTGAAGGGAGTGGGAAGACCTGGAAGCAAGATCAAAGGGTTCGACTCCAGCATGTTGACACAGGTGCTTATCTACATAGTCATGACAAGAAGTACACCCGCATAGCTGGGGGACAGCAGGAGGTTTGTGGTGTGAAAGATAAACGCGCTGACAATGTTTGGTTGGCATCAGAAGGCGTGTACCTTCCAGTCACCGAAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

187

Amino Acids

20.77

Weight (kDa)

8.49

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	36 - 170	2.1e-16	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	135
AccII	CGCG	1 cut(s)	501
AciI	CCGC	3 cut(s)	102, 210, 454
AclWI	GGATC	1 cut(s)	13
AdeI	CACNNNGTG	1 cut(s)	82
AfaI	GTAC	3 cut(s)	23, 449, 536
AgeI	ACCGGT	1 cut(s)	332
AgsI	TTSAA	2 cut(s)	37, 359
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	40, 172, 303, 461
AluI	AGCT	4 cut(s)	40, 172, 303, 461
AlwI	GGATC	1 cut(s)	13
ApeKI	GCWGC	3 cut(s)	229, 253, 303
AsiGI	ACCGGT	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	310, 347, 538
BanI	GGYRCC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	3 cut(s)	59, 245, 377
BbvI	GCAGC	3 cut(s)	240, 241, 290
BceAI	ACGGC	2 cut(s)	40, 70
BciT130I	CCWGG	1 cut(s)	376
BclI	TGATCA	1 cut(s)	337
BfaI	CTAG	2 cut(s)	243, 285
BfuAI	ACCTGC	1 cut(s)	4
BisI	GCNGC	3 cut(s)	230, 254, 304
BlsI	GCNGC	3 cut(s)	231, 255, 305
Bme1390I	CCNGG	1 cut(s)	376
BmgBI	CACGTC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	376
BmsI	GCATC	2 cut(s)	281, 530
BpiI	GAAGAC	3 cut(s)	59, 245, 377
BpmI	CTGGAG	2 cut(s)	364, 386
Bpu10I	CCTNAGC	2 cut(s)	41, 168
BsaAI	YACGTR	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	332
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	4 cut(s)	124, 158, 347, 542
BseBI	CCWGG	1 cut(s)	376
BseGI	GGATG	1 cut(s)	272
BseMII	CTCAG	2 cut(s)	55, 159
BseNI	ACTGG	4 cut(s)	124, 158, 347, 542
BseXI	GCAGC	3 cut(s)	240, 241, 290
BseYI	CCCAGC	1 cut(s)	461
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	1 cut(s)	501
BshNI	GGYRCC	1 cut(s)	26
BshTI	ACCGGT	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	333
BsiWI	CGTACG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	226, 480
BsmFI	GGGAC	2 cut(s)	226, 480
BsmI	GAATGC	2 cut(s)	70, 201
Bsp143I	GATC	3 cut(s)	5, 337, 385
BspACI	CCGC	3 cut(s)	102, 210, 454
BspCNI	CTCAG	2 cut(s)	54, 160
BspFNI	CGCG	1 cut(s)	501
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	1 cut(s)	13
BspT107I	GGYRCC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	4 cut(s)	124, 158, 347, 542
BssAI	RCCGGY	1 cut(s)	332
BssMI	GATC	3 cut(s)	5, 337, 385
BssSI	CACGAG	1 cut(s)	47
Bst2BI	CACGAG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	376
Bst4CI	ACNGT	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	68, 270
BstDEI	CTNAG	3 cut(s)	41, 168, 555
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	503
BstKTI	GATC	3 cut(s)	8, 340, 388
BstMBI	GATC	3 cut(s)	5, 337, 385
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 207
BstNI	CCWGG	1 cut(s)	376
BstNSI	RCATGY	2 cut(s)	272, 410
BstSCI	CCNGG	1 cut(s)	374
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	240, 241, 290
BstV2I	GAAGAC	3 cut(s)	59, 245, 377
BstX2I	RGATCY	1 cut(s)	5
BstYI	RGATCY	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	2 cut(s)	117, 340
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	2 cut(s)	68, 270
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	503
Cfr10I	RCCGGY	1 cut(s)	332
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	22, 448, 535
CspAI	ACCGGT	1 cut(s)	332
CviAII	CATG	4 cut(s)	235, 269, 407, 437
CviJI	RGCY	8 cut(s)	40, 93, 172, 253, 261, 303, 349, 461
CviKI_1	RGCY	8 cut(s)	40, 93, 172, 253, 261, 303, 349, 461
CviQI	GTAC	3 cut(s)	22, 448, 535
DdeI	CTNAG	3 cut(s)	41, 168, 555
DpnI	GATC	3 cut(s)	7, 339, 387
DpnII	GATC	3 cut(s)	5, 337, 385
DraIII	CACNNNGTG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	374
EcoT22I	ATGCAT	1 cut(s)	274
FaeI	CATG	4 cut(s)	238, 272, 410, 440
FaiI	YATR	7 cut(s)	90, 236, 270, 408, 432, 438, 458
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	2 cut(s)	226, 480
FatI	CATG	4 cut(s)	234, 268, 406, 436
FauI	CCCGC	2 cut(s)	203, 461
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	3 cut(s)	230, 254, 304
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	3 cut(s)	230, 254, 304
FspBI	CTAG	2 cut(s)	243, 285
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	3 cut(s)	230, 254, 304
GsaI	CCCAGC	1 cut(s)	465
GsuI	CTGGAG	2 cut(s)	364, 386
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	503
Hin1II	CATG	4 cut(s)	238, 272, 410, 440
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HincII	GTYRAC	2 cut(s)	136, 412
HindII	GTYRAC	2 cut(s)	136, 412
HinfI	GANTC	2 cut(s)	323, 399
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	3 cut(s)	310, 347, 538
Hpy166II	GTNNAC	4 cut(s)	136, 412, 450, 535
Hpy188I	TCNGA	3 cut(s)	207, 328, 526
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	4 cut(s)	136, 412, 450, 535
Hpy99I	CGWCG	3 cut(s)	83, 140, 143
HpyAV	CCTTC	3 cut(s)	353, 521, 548
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	20, 81
HpyCH4V	TGCA	5 cut(s)	70, 229, 256, 268, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 207
HpyF3I	CTNAG	3 cut(s)	41, 168, 555
HpySE526I	ACGT	2 cut(s)	20, 81
Hsp92II	CATG	4 cut(s)	238, 272, 410, 440
HspAI	GCGC	1 cut(s)	501
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	5, 337, 385
Lsp1109I	GCAGC	3 cut(s)	240, 241, 290
LweI	GCATC	2 cut(s)	281, 530
MaeI	CTAG	2 cut(s)	243, 285
MaeII	ACGT	2 cut(s)	20, 81
MaeIII	GTNAC	4 cut(s)	16, 115, 149, 544
MalI	GATC	3 cut(s)	7, 339, 387
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	3 cut(s)	5, 337, 385
MboII	GAAGA	3 cut(s)	64, 250, 382
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	3 cut(s)	289, 339, 469
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	1 cut(s)	162
MslI	CAYNNNNRTG	2 cut(s)	267, 435
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	376
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	2 cut(s)	70, 201
MvaI	CCWGG	1 cut(s)	376
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	99, 207
NdeII	GATC	3 cut(s)	5, 337, 385
NlaIII	CATG	4 cut(s)	238, 272, 410, 440
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	3 cut(s)	16, 115, 544
NsiI	ATGCAT	1 cut(s)	274
NspI	RCATGY	2 cut(s)	272, 410
PaeI	GCATGC	1 cut(s)	272
PagI	TCATGA	1 cut(s)	436
PctI	GAATGC	2 cut(s)	70, 201
PfeI	GAWTC	1 cut(s)	323
Pfl23II	CGTACG	1 cut(s)	21
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	231, 255, 305
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	21
Psp6I	CCWGG	1 cut(s)	374
PspFI	CCCAGC	1 cut(s)	461
PspGI	CCWGG	1 cut(s)	374
PspLI	CGTACG	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	3 cut(s)	23, 449, 536
RsaNI	GTAC	3 cut(s)	22, 448, 535
RseI	CAYNNNNRTG	2 cut(s)	267, 435
SalI	GTCGAC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	3 cut(s)	230, 254, 304
Sau3AI	GATC	3 cut(s)	5, 337, 385
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	376
SfaNI	GCATC	2 cut(s)	281, 530
SmiMI	CAYNNNNRTG	2 cut(s)	267, 435
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	1 cut(s)	354
SsiI	CCGC	3 cut(s)	102, 210, 454
SspMI	CTAG	2 cut(s)	243, 285
StyD4I	CCNGG	1 cut(s)	374
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	23, 84
TaqI	TCGA	2 cut(s)	135, 397
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	124, 347
TseFI	GTSAC	3 cut(s)	16, 115, 544
TseI	GCWGC	3 cut(s)	229, 253, 303
Tsp45I	GTSAC	3 cut(s)	16, 115, 544
TspDTI	ATGAA	2 cut(s)	251, 336
TspRI	CASTG	2 cut(s)	124, 347
XceI	RCATGY	2 cut(s)	272, 410
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	2 cut(s)	243, 285
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.