Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012046

Physical Location & Seq

Genomic Coordinates Reverse (-)

29090408 .. 29092778

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCGTGGGCTTTCTCTGCCTTGCTGTCTTCCTCTTCCTCGGCCTCGATCTCGATACAGGCTACGCCGCCACCACCCCCACCGCTGAGGGCGTCGAGATCACATACGGAAGTGTGCTGAAGCTTATGCACGAGAGGACCAAGTTTCGGCTGCACTCACACGACGTGCCGTATGGCTCTGGCAGTGGCCAGCAGTCTGTCACTGGGTTTCCAAATGTCGACGATGCTAACAGCTACTGGGTTGTTGGACCTCAGCTCGAAACATCTGCCAGGCAAGGTGACAGCATTCCGAGCGGGACCATCATCAGGTTGCAGCACATGAAGACTAGGAAATGGCTGCACAGCCATTTGCATGCTTCCCCCATATCTAGCAACCAAGAGGTGAGCTGCTTTGGGGGAGAAAATGAATCCGATACTGGTGATCACTGGAGGGTTATGATTGAAGGGAGTGGGAAGACCTGGAAGCAAGATCAAAGGGTTCGGCTCCAGCATGTTGACACTGGTATTTACCTACACAGTCATGACAAGAAATACCAACGCATAGCTGGGGGACAGCAGGAGGTTTGTGGTGTGAGAGACAAACGTGCTGACAATGTTTGGCTGGCAGCAGAAGGCGTATACCTTCCGGTTACTGAAACTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000030 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006486 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031347 GO:0031349 GO:0034645 GO:0035821 GO:0036211 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044003 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050832 GO:0050896 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052033 GO:0052166 GO:0052167 GO:0052169 GO:0052173 GO:0052200 GO:0052255 GO:0052257 GO:0052305 GO:0052306 GO:0052308 GO:0052509 GO:0052510 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052564 GO:0052572 GO:0065007 GO:0070085 GO:0071704 GO:0075136 GO:0080134 GO:0097502 GO:0098542 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIR

Protein Analysis

215

Amino Acids

23.74

Weight (kDa)

6.4

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIR	PF02815	53 - 199	4e-16	MIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012046)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25110
fragaria_vesca	FvH4_2g40990 FvH4_2g40990
malus_domestica	MD08G1057800.v1.1 MD15G1038400.v1.1
prunus_persica	Prupe.1G392400_v2.0.a1
pyrus_communis	pycom08g04800 pycom15g03590
rosa_chinensis	RchiOBHm_Chr6g0299581
rosa_laevigata	RLG00000011408
rosa_multiflora	Rmu_sc0033944.1_g000001 Rmu_sc0033945.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168540
rosa_rugosa	Rorug06G0290600
rosa_samantha	Rh6AG401500 Rh6BG409900 Rh6CG415400 Rh6DG402700
rosa_wichuraiana	Rw6G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	294
AccI	GTMKAC	2 cut(s)	219, 618
AciI	CCGC	3 cut(s)	69, 84, 294
AcoI	YGGCCR	2 cut(s)	3, 187
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	93
AdeI	CACNNNGTG	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	147, 306
AgsI	TTSAA	1 cut(s)	443
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	269, 458
AluBI	AGCT	5 cut(s)	124, 234, 256, 387, 545
AluI	AGCT	5 cut(s)	124, 234, 256, 387, 545
Alw26I	GTCTC	1 cut(s)	570
AlwNI	CAGNNNCTG	1 cut(s)	237
AoxI	GGCC	3 cut(s)	3, 43, 187
ApeKI	GCWGC	5 cut(s)	151, 313, 337, 387, 605
AspS9I	GGNCC	3 cut(s)	138, 248, 297
AsuHPI	GGTGA	3 cut(s)	290, 394, 431
AvaII	GGWCC	3 cut(s)	138, 248, 297
BalI	TGGCCA	1 cut(s)	189
BauI	CACGAG	1 cut(s)	131
BbsI	GAAGAC	3 cut(s)	22, 329, 461
BbvCI	CCTCAGC	2 cut(s)	87, 252
BbvI	GCAGC	5 cut(s)	138, 324, 325, 374, 617
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	154
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	2 cut(s)	271, 460
BclI	TGATCA	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	570
BfaI	CTAG	2 cut(s)	327, 369
BisI	GCNGC	6 cut(s)	69, 152, 314, 338, 388, 606
BlsI	GCNGC	6 cut(s)	70, 153, 315, 339, 389, 607
Bme1390I	CCNGG	2 cut(s)	271, 460
Bme18I	GGWCC	3 cut(s)	138, 248, 297
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	138, 248, 297
BmiI	GGNNCC	2 cut(s)	298, 485
BmrFI	CCNGG	2 cut(s)	271, 460
BmrI	ACTGGG	2 cut(s)	213, 247
BmsI	GCATC	1 cut(s)	214
BmuI	ACTGGG	2 cut(s)	213, 247
BpiI	GAAGAC	3 cut(s)	22, 329, 461
BpmI	CTGGAG	2 cut(s)	448, 470
Bpu10I	CCTNAGC	2 cut(s)	87, 252
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	6, 40
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 306
Bse1I	ACTGG	5 cut(s)	208, 242, 421, 431, 505
BseBI	CCWGG	2 cut(s)	271, 460
BseDI	CCNNGG	2 cut(s)	6, 40
BseLI	CCNNNNNNNGG	2 cut(s)	147, 306
BseMII	CTCAG	2 cut(s)	78, 266
BseNI	ACTGG	5 cut(s)	208, 242, 421, 431, 505
BseXI	GCAGC	5 cut(s)	138, 324, 325, 374, 617
BseYI	CCCAGC	1 cut(s)	545
BsgI	GTGCAG	2 cut(s)	137, 323
BshFI	GGCC	3 cut(s)	5, 45, 189
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	2 cut(s)	310, 564
BslI	CCNNNNNNNGG	2 cut(s)	147, 306
BsmAI	GTCTC	1 cut(s)	570
BsmFI	GGGAC	2 cut(s)	310, 564
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	3 cut(s)	5, 45, 189
Bsp143I	GATC	4 cut(s)	49, 99, 421, 469
BspACI	CCGC	3 cut(s)	69, 84, 294
BspANI	GGCC	3 cut(s)	5, 45, 189
BspCNI	CTCAG	2 cut(s)	79, 265
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	2 cut(s)	298, 485
BsrBI	CCGCTC	1 cut(s)	294
BsrI	ACTGG	5 cut(s)	208, 242, 421, 431, 505
BssECI	CCNNGG	2 cut(s)	6, 40
BssMI	GATC	4 cut(s)	49, 99, 421, 469
BssNAI	GTATAC	1 cut(s)	619
BssNI	GRCGYC	1 cut(s)	93
BssSI	CACGAG	1 cut(s)	131
Bst1107I	GTATAC	1 cut(s)	619
Bst2BI	CACGAG	1 cut(s)	131
Bst2UI	CCWGG	2 cut(s)	271, 460
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	3 cut(s)	191, 354, 603
BstDEI	CTNAG	3 cut(s)	87, 252, 639
BstDSI	CCRYGG	1 cut(s)	6
BstKTI	GATC	4 cut(s)	52, 102, 424, 472
BstMAI	GTCTC	1 cut(s)	570
BstMBI	GATC	4 cut(s)	49, 99, 421, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 291
BstNI	CCWGG	2 cut(s)	271, 460
BstNSI	RCATGY	2 cut(s)	356, 494
BstSCI	CCNGG	2 cut(s)	269, 458
BstV1I	GCAGC	5 cut(s)	138, 324, 325, 374, 617
BstV2I	GAAGAC	3 cut(s)	22, 329, 461
BstZ17I	GTATAC	1 cut(s)	619
BsuRI	GGCC	3 cut(s)	5, 45, 189
BtgI	CCRYGG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	4 cut(s)	190, 201, 424, 498
Cac8I	GCNNGC	3 cut(s)	191, 354, 603
CaiI	CAGNNNCTG	1 cut(s)	237
CciI	TCATGA	1 cut(s)	520
Cfr13I	GGNCC	3 cut(s)	138, 248, 297
CseI	GACGC	1 cut(s)	82
CviAII	CATG	4 cut(s)	319, 353, 491, 521
DdeI	CTNAG	3 cut(s)	87, 252, 639
DpnI	GATC	4 cut(s)	51, 101, 423, 471
DpnII	GATC	4 cut(s)	49, 99, 421, 469
DraIII	CACNNNGTG	1 cut(s)	166
EaeI	YGGCCR	2 cut(s)	3, 187
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
Eco47I	GGWCC	3 cut(s)	138, 248, 297
Eco57I	CTGAAG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	269, 458
FaeI	CATG	4 cut(s)	322, 356, 494, 524
FaqI	GGGAC	2 cut(s)	310, 564
FatI	CATG	4 cut(s)	318, 352, 490, 520
FauI	CCCGC	1 cut(s)	287
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	2 cut(s)	219, 618
Fnu4HI	GCNGC	6 cut(s)	69, 152, 314, 338, 388, 606
Fsp4HI	GCNGC	6 cut(s)	69, 152, 314, 338, 388, 606
FspBI	CTAG	2 cut(s)	327, 369
GluI	GCNGC	6 cut(s)	69, 152, 314, 338, 388, 606
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	448, 470
HaeIII	GGCC	3 cut(s)	5, 45, 189
HapII	CCGG	1 cut(s)	626
HgaI	GACGC	1 cut(s)	82
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	4 cut(s)	322, 356, 494, 524
HincII	GTYRAC	2 cut(s)	220, 496
HindII	GTYRAC	2 cut(s)	220, 496
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	1 cut(s)	407
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	3 cut(s)	290, 394, 431
Hpy166II	GTNNAC	3 cut(s)	220, 496, 619
Hpy188I	TCNGA	2 cut(s)	291, 412
Hpy188III	TCNNGA	3 cut(s)	53, 97, 521
Hpy8I	GTNNAC	3 cut(s)	220, 496, 619
Hpy99I	CGWCG	3 cut(s)	98, 167, 224
HpyAV	CCTTC	3 cut(s)	437, 605, 632
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	2 cut(s)	165, 583
HpyCH4V	TGCA	5 cut(s)	130, 154, 313, 340, 352
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 291
HpyF3I	CTNAG	3 cut(s)	87, 252, 639
HpySE526I	ACGT	2 cut(s)	165, 583
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	322, 356, 494, 524
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	4 cut(s)	49, 99, 421, 469
LmnI	GCTCC	1 cut(s)	489
Lsp1109I	GCAGC	5 cut(s)	138, 324, 325, 374, 617
LweI	GCATC	1 cut(s)	214
MaeI	CTAG	2 cut(s)	327, 369
MaeII	ACGT	2 cut(s)	165, 583
MaeIII	GTNAC	3 cut(s)	199, 278, 628
MalI	GATC	4 cut(s)	51, 101, 423, 471
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	4 cut(s)	49, 99, 421, 469
MboII	GAAGA	4 cut(s)	22, 28, 334, 466
MlsI	TGGCCA	1 cut(s)	189
MluNI	TGGCCA	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	226
MnlI	CCTC	9 cut(s)	44, 50, 56, 82, 129, 261, 373, 423, 553
Mox20I	TGGCCA	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	189
MslI	CAYNNNNRTG	2 cut(s)	351, 519
Msp20I	TGGCCA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	271, 460
Mva1269I	GAATGC	1 cut(s)	285
MvaI	CCWGG	2 cut(s)	271, 460
MwoI	GCNNNNNNNGC	2 cut(s)	18, 291
NdeII	GATC	4 cut(s)	49, 99, 421, 469
NlaIII	CATG	4 cut(s)	322, 356, 494, 524
NlaIV	GGNNCC	2 cut(s)	298, 485
NmeAIII	GCCGAG	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	199, 278
NspI	RCATGY	2 cut(s)	356, 494
PaeI	GCATGC	1 cut(s)	356
PagI	TCATGA	1 cut(s)	520
PctI	GAATGC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	407
PkrI	GCNGC	6 cut(s)	70, 153, 315, 339, 389, 607
Psp6I	CCWGG	2 cut(s)	269, 458
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	269, 458
PspN4I	GGNNCC	2 cut(s)	298, 485
PspPI	GGNCC	3 cut(s)	138, 248, 297
PstNI	CAGNNNCTG	1 cut(s)	237
RseI	CAYNNNNRTG	2 cut(s)	351, 519
SalI	GTCGAC	1 cut(s)	218
SatI	GCNGC	6 cut(s)	69, 152, 314, 338, 388, 606
Sau3AI	GATC	4 cut(s)	49, 99, 421, 469
Sau96I	GGNCC	3 cut(s)	138, 248, 297
ScrFI	CCNGG	2 cut(s)	271, 460
SfaNI	GCATC	1 cut(s)	214
SinI	GGWCC	3 cut(s)	138, 248, 297
SmiMI	CAYNNNNRTG	2 cut(s)	351, 519
SphI	GCATGC	1 cut(s)	356
SsiI	CCGC	3 cut(s)	69, 84, 294
SspMI	CTAG	2 cut(s)	327, 369
StyD4I	CCNGG	2 cut(s)	269, 458
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	2 cut(s)	168, 586
TaqI	TCGA	5 cut(s)	48, 54, 96, 219, 258
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	407
TscAI	CASTG	4 cut(s)	190, 208, 431, 505
TseFI	GTSAC	2 cut(s)	199, 278
TseI	GCWGC	5 cut(s)	151, 313, 337, 387, 605
Tsp45I	GTSAC	2 cut(s)	199, 278
TspDTI	ATGAA	2 cut(s)	335, 420
TspGWI	ACGGA	1 cut(s)	123
TspRI	CASTG	4 cut(s)	190, 208, 431, 505
VpaK11BI	GGWCC	3 cut(s)	138, 248, 297
XceI	RCATGY	2 cut(s)	356, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmiI	GTMKAC	2 cut(s)	219, 618
XspI	CTAG	2 cut(s)	327, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.