AT2G25780

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017191
Physical Location & Seq
Forward (+)
10995095 .. 10996045
951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G25780.1

Sequence Viewer

Length: 462 bp
ATGAATAAAGGGAATATTCTTCGAAAGGCCTTCTCTGATGTTTCCTTGGAGAGAAAACGAAATATAAGCCAAAACGACGAGCAAGAACAAGAAGGAGAGGTAGAAGTGAACCAAGTGAAATGTGATTGTTGTGGTATAGAAGAAGAATGTACTATGCAATACATAGCCAAAGTCAGAAACTTGTATTCAGGCAATTGGGTTTGTGGTCTTTGTGGCGAAGTAGTAACTGAGAGACTTCGGAAAGATCCTCCAATAGCCGCTGGGATACAAGAAGCCTTTGACTGGCACAAAGGAATTTGTGATGCCTTCAATTCTACTACAAGGGTGAACCCTAAACTCGACTTCACAAGATCGATGAGAGAGATCGCTAAACGAAGCAGTCAGAACAGGATGATGTCAGACTTTTCGATAGGATCCAAAATTGCTCGAACAATCAGTTGTGATCCAAGGCTCGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

153

Amino Acids

17.42

Weight (kDa)

6.6

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 36 - 129 2e-33 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25780
fragaria_vesca FvH4_2g35380
malus_domestica MD15G1092000.v1.1
prunus_persica Prupe.1G446900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306531
rosa_laevigata RLG00000010788
rosa_multiflora Rmu_sc0002971.1_g000006
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462400 Rh6BG438400 Rh6CG476600 Rh6DG463300
rosa_wichuraiana Rw6G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AclWI GGATC 4 cut(s) 239, 408, 421, 437
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 310
Alw26I GTCTC 2 cut(s) 226, 449
AlwI GGATC 4 cut(s) 239, 408, 421, 437
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 1 cut(s) 27
ApoI RAATTY 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 337
AsuII TTCGAA 1 cut(s) 22
AvaI CYCGRG 1 cut(s) 452
BamHI GGATCC 1 cut(s) 413
BciVI GTATCC 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 226, 449
BfuI GTATCC 1 cut(s) 258
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 452
BmiI GGNNCC 1 cut(s) 415
BmsI GCATC 1 cut(s) 292
Bpu14I TTCGAA 1 cut(s) 22
Bsa29I ATCGAT 1 cut(s) 353
BsaJI CCNNGG 2 cut(s) 45, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 287
BseCI ATCGAT 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 45, 446
BseGI GGATG 1 cut(s) 396
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 260
BshFI GGCC 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 452
BslI CCNNNNNNNGG 1 cut(s) 282
BsmAI GTCTC 2 cut(s) 226, 449
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 452
Bsp119I TTCGAA 1 cut(s) 22
Bsp143I GATC 5 cut(s) 244, 350, 363, 413, 442
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 220
BspDI ATCGAT 1 cut(s) 353
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 4 cut(s) 239, 408, 421, 437
BspT104I TTCGAA 1 cut(s) 22
BsrI ACTGG 1 cut(s) 287
BssECI CCNNGG 2 cut(s) 45, 446
BssMI GATC 5 cut(s) 244, 350, 363, 413, 442
BssT1I CCWWGG 2 cut(s) 45, 446
BstBI TTCGAA 1 cut(s) 22
BstDEI CTNAG 1 cut(s) 228
BstF5I GGATG 1 cut(s) 396
BstKTI GATC 5 cut(s) 247, 353, 366, 416, 445
BstMAI GTCTC 2 cut(s) 226, 449
BstMBI GATC 5 cut(s) 244, 350, 363, 413, 442
BstX2I RGATCY 2 cut(s) 244, 413
BstYI RGATCY 2 cut(s) 244, 413
Bsu15I ATCGAT 1 cut(s) 353
BsuI GTATCC 1 cut(s) 258
BsuRI GGCC 1 cut(s) 29
BsuTUI ATCGAT 1 cut(s) 353
BtsCI GGATG 1 cut(s) 396
ClaI ATCGAT 1 cut(s) 353
Csp6I GTAC 1 cut(s) 150
CviJI RGCY 6 cut(s) 29, 69, 167, 257, 275, 451
CviKI_1 RGCY 6 cut(s) 29, 69, 167, 257, 275, 451
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 228
DpnI GATC 5 cut(s) 246, 352, 365, 415, 444
DpnII GATC 5 cut(s) 244, 350, 363, 413, 442
Eco130I CCWWGG 2 cut(s) 45, 446
Eco147I AGGCCT 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 452
EcoT14I CCWWGG 2 cut(s) 45, 446
ErhI CCWWGG 2 cut(s) 45, 446
FaiI YATR 4 cut(s) 65, 137, 155, 164
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 403
Fsp4HI GCNGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 258
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 29
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 2 cut(s) 109, 328
Hpy188I TCNGA 5 cut(s) 37, 176, 240, 384, 400
Hpy188III TCNNGA 1 cut(s) 454
Hpy8I GTNNAC 2 cut(s) 109, 328
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 3 cut(s) 40, 86, 316
HpyCH4V TGCA 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 228
Kzo9I GATC 5 cut(s) 244, 350, 363, 413, 442
LpnPI CCDG 4 cut(s) 174, 246, 268, 373
LweI GCATC 1 cut(s) 292
MaeIII GTNAC 1 cut(s) 223
MalI GATC 5 cut(s) 246, 352, 365, 415, 444
MboI GATC 5 cut(s) 244, 350, 363, 413, 442
MboII GAAGA 3 cut(s) 11, 152, 155
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 2 cut(s) 244, 413
MluCI AATT 4 cut(s) 193, 294, 310, 420
MnlI CCTC 2 cut(s) 91, 258
MspA1I CMGCKG 1 cut(s) 260
MunI CAATTG 1 cut(s) 193
NdeII GATC 5 cut(s) 244, 350, 363, 413, 442
NlaIV GGNNCC 1 cut(s) 415
NspV TTCGAA 1 cut(s) 22
PaeR7I CTCGAG 1 cut(s) 452
PceI AGGCCT 1 cut(s) 29
PkrI GCNGC 1 cut(s) 259
PspFI CCCAGC 1 cut(s) 260
PspN4I GGNNCC 1 cut(s) 415
PsuI RGATCY 2 cut(s) 244, 413
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 5 cut(s) 244, 350, 363, 413, 442
SetI ASST 1 cut(s) 102
SfaNI GCATC 1 cut(s) 292
Sfr274I CTCGAG 1 cut(s) 452
SfuI TTCGAA 1 cut(s) 22
SlaI CTCGAG 1 cut(s) 452
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 4 cut(s) 193, 294, 310, 420
SseBI AGGCCT 1 cut(s) 29
SsiI CCGC 1 cut(s) 258
SspI AATATT 1 cut(s) 16
StuI AGGCCT 1 cut(s) 29
StyI CCWWGG 2 cut(s) 45, 446
TaqI TCGA 6 cut(s) 22, 339, 353, 407, 427, 453
TasI AATT 4 cut(s) 193, 294, 310, 420
TatI WGTACW 1 cut(s) 149
TauI GCSGC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.