Rh6CG476600

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0017191
Physical Location & Seq
Forward (+)
64523437 .. 64524073
637 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG476600.1

Sequence Viewer

Length: 501 bp
ATGATCAGTTGCGTCGTAGCCAATATGGATGAGCAAGGGCTTCTCCGAAGGACGAGTTCTGATGTGTCTGTCGAGATGATAGGCAAGTATAAGAGGGAACTGGAATTTTTTAGCAGCAGCAAGATTAATGGTCTTAGCACAATTGATGAGGTGAAGCAAGTGGAATGCGAATGCTGTGGGATGAAAGAGGAATGCACCCAAGCCTATATAGCCAAAGTCGAGGATTCCTTTTCAGGAAAATGGGTTTGTGGGCTTTGTTCCGAAGCTGTGAAAGAAAGAATGACAAGATCAGCTCAGGAATCAGTTGCCATGGAAGAAGCTGTGAGCTCTCACAGGGATGTGTGCCAGAAATTCAACAGTACCAGACTCAATCCCAAGCTCTCCTTAACATTTGCAATGAGGGACATAGCAAAACGAAGCGAGGAGAGCAGAAATTCCAAGAACTCGTCATGCACGCCCAAGCTTACTCGAAGAAGTAGCTGTGTTCCAAGGATGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

166

Amino Acids

18.66

Weight (kDa)

8.32

Isoelectric Point (pI)

66.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 51 - 143 3.6e-35 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25780
fragaria_vesca FvH4_2g35380
malus_domestica MD15G1092000.v1.1
prunus_persica Prupe.1G446900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306531
rosa_laevigata RLG00000010788
rosa_multiflora Rmu_sc0002971.1_g000006
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462400 Rh6BG438400 Rh6CG476600 Rh6DG463300
rosa_wichuraiana Rw6G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 104, 350, 433
AfaI GTAC 1 cut(s) 361
AgsI TTSAA 1 cut(s) 355
AluBI AGCT 7 cut(s) 266, 293, 320, 327, 379, 463, 480
AluI AGCT 7 cut(s) 266, 293, 320, 327, 379, 463, 480
Alw21I GWGCWC 1 cut(s) 329
ApeKI GCWGC 2 cut(s) 114, 117
ApoI RAATTY 3 cut(s) 104, 350, 433
AseI ATTAAT 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 163
BanII GRGCYC 1 cut(s) 329
Bbv12I GWGCWC 1 cut(s) 329
BbvI GCAGC 2 cut(s) 126, 129
BclI TGATCA 1 cut(s) 3
BisI GCNGC 2 cut(s) 115, 118
BlsI GCNGC 2 cut(s) 116, 119
Bpu10I CCTNAGC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 309, 488
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 309, 488
BseGI GGATG 4 cut(s) 34, 186, 343, 498
BseMI GCAATG 1 cut(s) 402
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 1 cut(s) 437
BseXI GCAGC 2 cut(s) 126, 129
BsiHKAI GWGCWC 1 cut(s) 329
BslFI GGGAC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 416
BsmI GAATGC 3 cut(s) 170, 176, 197
Bsp1286I GDGCHC 1 cut(s) 329
Bsp143I GATC 2 cut(s) 3, 287
Bsp19I CCATGG 1 cut(s) 309
BspCNI CTCAG 1 cut(s) 307
BsrDI GCAATG 1 cut(s) 402
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 309, 488
BssMI GATC 2 cut(s) 3, 287
BssT1I CCWWGG 2 cut(s) 309, 488
Bst4CI ACNGT 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 455
BstDEI CTNAG 2 cut(s) 134, 294
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 4 cut(s) 34, 186, 343, 498
BstKTI GATC 2 cut(s) 6, 290
BstMBI GATC 2 cut(s) 3, 287
BstMWI GCNNNNNNNGC 2 cut(s) 209, 426
BstV1I GCAGC 2 cut(s) 126, 129
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 4 cut(s) 34, 186, 343, 498
Cac8I GCNNGC 1 cut(s) 455
Csp6I GTAC 1 cut(s) 360
CviAII CATG 2 cut(s) 310, 450
CviQI GTAC 1 cut(s) 360
DdeI CTNAG 2 cut(s) 134, 294
DpnI GATC 2 cut(s) 5, 289
DpnII GATC 2 cut(s) 3, 287
Ecl136II GAGCTC 1 cut(s) 327
Eco130I CCWWGG 2 cut(s) 309, 488
Eco24I GRGCYC 1 cut(s) 329
Eco53kI GAGCTC 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 327
EcoT14I CCWWGG 2 cut(s) 309, 488
EcoT38I GRGCYC 1 cut(s) 329
ErhI CCWWGG 2 cut(s) 309, 488
FaeI CATG 2 cut(s) 313, 453
FaiI YATR 7 cut(s) 26, 90, 207, 209, 311, 407, 451
FalI AAGNNNNNCTT 2 cut(s) 368, 400
FaqI GGGAC 1 cut(s) 416
FatI CATG 2 cut(s) 309, 449
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 115, 118
FokI GGATG 3 cut(s) 41, 193, 350
FriOI GRGCYC 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 115, 118
GluI GCNGC 2 cut(s) 115, 118
Hin1II CATG 2 cut(s) 313, 453
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 3 cut(s) 224, 299, 366
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 3 cut(s) 47, 61, 262
Hpy188III TCNNGA 3 cut(s) 73, 234, 296
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4V TGCA 3 cut(s) 195, 395, 453
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 426
HpyF3I CTNAG 2 cut(s) 134, 294
Hsp92II CATG 2 cut(s) 313, 453
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 287
LpnPI CCDG 6 cut(s) 86, 219, 281, 319, 359, 376
Lsp1109I GCAGC 2 cut(s) 126, 129
MalI GATC 2 cut(s) 5, 289
MboI GATC 2 cut(s) 3, 287
MboII GAAGA 2 cut(s) 326, 483
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 1 cut(s) 329
MluCI AATT 4 cut(s) 104, 141, 350, 433
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 6 cut(s) 87, 142, 181, 214, 393, 415
MseI TTAA 2 cut(s) 126, 386
MslI CAYNNNNRTG 1 cut(s) 336
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 3 cut(s) 170, 176, 197
MwoI GCNNNNNNNGC 2 cut(s) 209, 426
NcoI CCATGG 1 cut(s) 309
NdeII GATC 2 cut(s) 3, 287
NlaIII CATG 2 cut(s) 313, 453
PctI GAATGC 3 cut(s) 170, 176, 197
PfeI GAWTC 2 cut(s) 224, 299
PkrI GCNGC 2 cut(s) 116, 119
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PshBI ATTAAT 1 cut(s) 126
Psp124BI GAGCTC 1 cut(s) 329
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
RseI CAYNNNNRTG 1 cut(s) 336
SacI GAGCTC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 126, 386
SatI GCNGC 2 cut(s) 115, 118
Sau3AI GATC 2 cut(s) 3, 287
SchI GAGTC 1 cut(s) 360
SduI GDGCHC 1 cut(s) 329
SetI ASST 8 cut(s) 153, 268, 295, 322, 329, 381, 465, 482
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 4 cut(s) 104, 141, 350, 433
SstI GAGCTC 1 cut(s) 329
StyI CCWWGG 2 cut(s) 309, 488
TaaI ACNGT 1 cut(s) 359
TaqI TCGA 3 cut(s) 72, 219, 469
TasI AATT 4 cut(s) 104, 141, 350, 433
TfiI GAWTC 2 cut(s) 224, 299
Tru1I TTAA 2 cut(s) 126, 386
Tru9I TTAA 2 cut(s) 126, 386
TseI GCWGC 2 cut(s) 114, 117
TspDTI ATGAA 1 cut(s) 197
VspI ATTAAT 1 cut(s) 126
XapI RAATTY 3 cut(s) 104, 350, 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.