RchiOBHm_Chr6g0306531

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017191
Physical Location & Seq
Forward (+)
65195914 .. 65196339
426 bp
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UTR
Exon/CDS
Intron
PRQ27555

Sequence Viewer

Length: 426 bp
ATGATAGGCAAGTATAAGAGGGAACTGGAATTTTTTAGCAGCAGCAAGATTAATGGTCTTAGCACAATTGATGAGGTGAAGCAAGTGGAATGCGAATGCTGTGGGATGAAAGAGGAATGCACCCAAGCCTATATAGCCAAAGTCGAGGATTCCTTTTCAGGAAAATGGGTTTGTGGGCTTTGTTCCGAAGCTGTGAAAGAAAGAATGACAAGATCAGCTCAGGAATCAGTTGCCATGGAAGAAGCTGTGAGCTCTCACAGGGATGTGTGCCAGAAATTCAACAGTACCAGACTCAATCCCAAGCTCTCCTTAACATTTGCAATGAGGGACATAGCAAAACGAAGCGAGGAGAGCAGAAATTCCAAGAACTCGTCATGCACGCCCAAGCTTACTCGAAGAAGTAGCTGTGTTCCAAGGATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

141

Amino Acids

15.92

Weight (kDa)

8.75

Isoelectric Point (pI)

66.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 26 - 118 2.2e-35 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25780
fragaria_vesca FvH4_2g35380
malus_domestica MD15G1092000.v1.1
prunus_persica Prupe.1G446900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306531
rosa_laevigata RLG00000010788
rosa_multiflora Rmu_sc0002971.1_g000006
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462400 Rh6BG438400 Rh6CG476600 Rh6DG463300
rosa_wichuraiana Rw6G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 29, 275, 358
AfaI GTAC 1 cut(s) 286
AgsI TTSAA 1 cut(s) 280
AluBI AGCT 7 cut(s) 191, 218, 245, 252, 304, 388, 405
AluI AGCT 7 cut(s) 191, 218, 245, 252, 304, 388, 405
Alw21I GWGCWC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 39, 42
ApoI RAATTY 3 cut(s) 29, 275, 358
AseI ATTAAT 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 88
BanII GRGCYC 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 51, 54
BisI GCNGC 2 cut(s) 40, 43
BlsI GCNGC 2 cut(s) 41, 44
Bpu10I CCTNAGC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 234, 413
Bse1I ACTGG 1 cut(s) 30
Bse3DI GCAATG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 234, 413
BseGI GGATG 2 cut(s) 111, 268
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 362
BseXI GCAGC 2 cut(s) 51, 54
BsiHKAI GWGCWC 1 cut(s) 254
BslFI GGGAC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 341
BsmI GAATGC 3 cut(s) 95, 101, 122
Bsp1286I GDGCHC 1 cut(s) 254
Bsp143I GATC 1 cut(s) 212
Bsp19I CCATGG 1 cut(s) 234
BspCNI CTCAG 1 cut(s) 232
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 234, 413
BssMI GATC 1 cut(s) 212
BssT1I CCWWGG 2 cut(s) 234, 413
Bst4CI ACNGT 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 59, 219
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 111, 268
BstKTI GATC 1 cut(s) 215
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 134, 351
BstV1I GCAGC 2 cut(s) 51, 54
BtgI CCRYGG 1 cut(s) 234
BtsCI GGATG 2 cut(s) 111, 268
Cac8I GCNNGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 285
CviAII CATG 2 cut(s) 235, 375
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 2 cut(s) 59, 219
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Ecl136II GAGCTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 234, 413
Eco24I GRGCYC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 234, 413
EcoT38I GRGCYC 1 cut(s) 254
ErhI CCWWGG 2 cut(s) 234, 413
FaeI CATG 2 cut(s) 238, 378
FaiI YATR 6 cut(s) 15, 132, 134, 236, 332, 376
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FaqI GGGAC 1 cut(s) 341
FatI CATG 2 cut(s) 234, 374
Fnu4HI GCNGC 2 cut(s) 40, 43
FokI GGATG 2 cut(s) 118, 275
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 40, 43
GluI GCNGC 2 cut(s) 40, 43
Hin1II CATG 2 cut(s) 238, 378
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 3 cut(s) 149, 224, 291
HphI GGTGA 1 cut(s) 88
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 159, 221
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 3 cut(s) 120, 320, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 351
HpyF3I CTNAG 2 cut(s) 59, 219
Hsp92II CATG 2 cut(s) 238, 378
Kzo9I GATC 1 cut(s) 212
LpnPI CCDG 6 cut(s) 11, 144, 206, 244, 284, 301
Lsp1109I GCAGC 2 cut(s) 51, 54
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 2 cut(s) 251, 408
MfeI CAATTG 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 254
MluCI AATT 4 cut(s) 29, 66, 275, 358
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 6 cut(s) 12, 67, 106, 139, 318, 340
MseI TTAA 3 cut(s) 51, 311, 420
MslI CAYNNNNRTG 1 cut(s) 261
MunI CAATTG 1 cut(s) 66
Mva1269I GAATGC 3 cut(s) 95, 101, 122
MwoI GCNNNNNNNGC 2 cut(s) 134, 351
NcoI CCATGG 1 cut(s) 234
NdeII GATC 1 cut(s) 212
NlaIII CATG 2 cut(s) 238, 378
PctI GAATGC 3 cut(s) 95, 101, 122
PfeI GAWTC 2 cut(s) 149, 224
PkrI GCNGC 2 cut(s) 41, 44
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PshBI ATTAAT 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 254
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
RseI CAYNNNNRTG 1 cut(s) 261
SacI GAGCTC 1 cut(s) 254
SaqAI TTAA 3 cut(s) 51, 311, 420
SatI GCNGC 2 cut(s) 40, 43
Sau3AI GATC 1 cut(s) 212
SchI GAGTC 1 cut(s) 285
SduI GDGCHC 1 cut(s) 254
SetI ASST 8 cut(s) 78, 193, 220, 247, 254, 306, 390, 407
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 4 cut(s) 29, 66, 275, 358
SstI GAGCTC 1 cut(s) 254
StyI CCWWGG 2 cut(s) 234, 413
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 144, 394
TasI AATT 4 cut(s) 29, 66, 275, 358
TfiI GAWTC 2 cut(s) 149, 224
Tru1I TTAA 3 cut(s) 51, 311, 420
Tru9I TTAA 3 cut(s) 51, 311, 420
TseI GCWGC 2 cut(s) 39, 42
TspDTI ATGAA 1 cut(s) 122
VspI ATTAAT 1 cut(s) 51
XapI RAATTY 3 cut(s) 29, 275, 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.