RLG00000010788

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017191
Physical Location & Seq
Reverse (-)
4364285 .. 4364884
600 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010788

Sequence Viewer

Length: 465 bp
ATGAATGAGCAAGGGCTTCTCCGAAGGACGAATTCTGATGTGTCGGTCGAGTATAAGAGGGAACTGGAAATTTTTAGCAGCAGCAAGATTAATGGTCTTAGCACAATTGATGAGGTGAAGCAAGTGGAATGCGAATGCTGTGGGATGAAAGAGGAATGCACCCAAGCCTATATAGCCAAAGTCCAGGATTCCTTTTCAGGAAAATGGGTTTGTGGGCTTTGTTCCGAAGCTGTGAAAGAAAGAATGACAAGATCAACTCAGGAATCAGTTGCCATGGAAGAAGCTGTGAGCTCTCACAAGGATGTGTGCCAGAAATTCAACAGTACCAGACTCAATCCCAAGCTCTCCTTAACATTTGCAATGAGGGACATAGCAAAACGAAGCGAGGAGAGCAGAAATTCCAAGAACTCGTCATGCAAGCCCAAGCTTACTCGAAGAAGTAGCTGTGTTCCAAGGATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

155

Amino Acids

17.42

Weight (kDa)

8.74

Isoelectric Point (pI)

67.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 39 - 131 8.5e-36 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25780
fragaria_vesca FvH4_2g35380
malus_domestica MD15G1092000.v1.1
prunus_persica Prupe.1G446900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306531
rosa_laevigata RLG00000010788
rosa_multiflora Rmu_sc0002971.1_g000006
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462400 Rh6BG438400 Rh6CG476600 Rh6DG463300
rosa_wichuraiana Rw6G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 31, 69, 314, 397
AfaI GTAC 1 cut(s) 325
AgsI TTSAA 1 cut(s) 319
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 6 cut(s) 230, 284, 291, 343, 427, 444
AluI AGCT 6 cut(s) 230, 284, 291, 343, 427, 444
Alw21I GWGCWC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 78, 81
ApoI RAATTY 4 cut(s) 31, 69, 314, 397
AseI ATTAAT 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 127
BanII GRGCYC 1 cut(s) 293
Bbv12I GWGCWC 1 cut(s) 293
BbvI GCAGC 2 cut(s) 90, 93
BciT130I CCWGG 1 cut(s) 185
BisI GCNGC 2 cut(s) 79, 82
BlsI GCNGC 2 cut(s) 80, 83
Bme1390I CCNGG 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 273, 452
Bse1I ACTGG 1 cut(s) 69
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 273, 452
BseGI GGATG 2 cut(s) 150, 307
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 2 cut(s) 90, 93
Bsh1285I CGRYCG 1 cut(s) 48
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 293
BslFI GGGAC 1 cut(s) 380
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 3 cut(s) 134, 140, 161
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 1 cut(s) 251
Bsp19I CCATGG 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 2 cut(s) 273, 452
BssMI GATC 1 cut(s) 251
BssT1I CCWWGG 2 cut(s) 273, 452
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 2 cut(s) 98, 258
BstDSI CCRYGG 1 cut(s) 273
BstF5I GGATG 2 cut(s) 150, 307
BstKTI GATC 1 cut(s) 254
BstMBI GATC 1 cut(s) 251
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 173, 390
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 90, 93
BtgI CCRYGG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 150, 307
Cac8I GCNNGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 324
CviAII CATG 2 cut(s) 274, 414
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 2 cut(s) 98, 258
DpnI GATC 1 cut(s) 253
DpnII GATC 1 cut(s) 251
Ecl136II GAGCTC 1 cut(s) 291
Eco130I CCWWGG 2 cut(s) 273, 452
Eco24I GRGCYC 1 cut(s) 293
Eco53kI GAGCTC 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 273, 452
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 2 cut(s) 273, 452
FaeI CATG 2 cut(s) 277, 417
FaiI YATR 6 cut(s) 54, 171, 173, 275, 371, 415
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 380
FatI CATG 2 cut(s) 273, 413
Fnu4HI GCNGC 2 cut(s) 79, 82
FokI GGATG 2 cut(s) 157, 314
FriOI GRGCYC 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 79, 82
GluI GCNGC 2 cut(s) 79, 82
Hin1II CATG 2 cut(s) 277, 417
HindIII AAGCTT 1 cut(s) 425
HinfI GANTC 3 cut(s) 188, 263, 330
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 3 cut(s) 23, 37, 226
Hpy188III TCNNGA 2 cut(s) 198, 260
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 3 cut(s) 159, 359, 417
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 390
HpyF3I CTNAG 2 cut(s) 98, 258
Hsp92II CATG 2 cut(s) 277, 417
Kzo9I GATC 1 cut(s) 251
LpnPI CCDG 7 cut(s) 50, 170, 183, 197, 245, 323, 340
Lsp1109I GCAGC 2 cut(s) 90, 93
MalI GATC 1 cut(s) 253
MboI GATC 1 cut(s) 251
MboII GAAGA 2 cut(s) 290, 447
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 293
MluCI AATT 5 cut(s) 31, 69, 105, 314, 397
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 5 cut(s) 51, 106, 145, 357, 379
MseI TTAA 3 cut(s) 90, 350, 459
MslI CAYNNNNRTG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 185
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 3 cut(s) 134, 140, 161
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 173, 390
NcoI CCATGG 1 cut(s) 273
NdeII GATC 1 cut(s) 251
NlaIII CATG 2 cut(s) 277, 417
PctI GAATGC 3 cut(s) 134, 140, 161
PfeI GAWTC 2 cut(s) 188, 263
PfoI TCCNGGA 1 cut(s) 183
PkrI GCNGC 2 cut(s) 80, 83
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PshBI ATTAAT 1 cut(s) 90
Psp124BI GAGCTC 1 cut(s) 293
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 293
SaqAI TTAA 3 cut(s) 90, 350, 459
SatI GCNGC 2 cut(s) 79, 82
Sau3AI GATC 1 cut(s) 251
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 293
SetI ASST 7 cut(s) 117, 232, 286, 293, 345, 429, 446
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 5 cut(s) 31, 69, 105, 314, 397
SstI GAGCTC 1 cut(s) 293
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 273, 452
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 2 cut(s) 48, 433
TaqII GACCGA 1 cut(s) 34
TasI AATT 5 cut(s) 31, 69, 105, 314, 397
TfiI GAWTC 2 cut(s) 188, 263
Tru1I TTAA 3 cut(s) 90, 350, 459
Tru9I TTAA 3 cut(s) 90, 350, 459
TseI GCWGC 2 cut(s) 78, 81
TspDTI ATGAA 2 cut(s) 17, 161
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 4 cut(s) 31, 69, 314, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.