FvH4_2g35380

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017191
Physical Location & Seq
Reverse (-)
26104729 .. 26105640
912 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35380.t1

Sequence Viewer

Length: 510 bp
ATGATCAGTTGCCTCGTAGCCAATATGAATGAGCAAGGGCTTCTCCGAAGGACAAGTTCTGATGTGTCTGTCGAGATGATAGGCAAGTATAAAAGGGAACTGGAAATCTTTAGCAGCAGCAGCAGCAGCAAGATTAATAATCTTAGCACAATTGATGAGGTGAAGCTAGCAGAATGCGAGTGCTGTGAGATGAAAGAGGAGTGCACCCAAGCCTATATAGCCAAAGTTGAGGATTACTTTTCAGGAAAATGGGTTTGCGGGCTTTGTTCCGAAGCTGTGAAAGAAAGAATGACAAGATCAGCTCAGAGATCAGTTGCCATGGAAGAAGCTGTGAGCTCTCACAGGGATGTGTGCCGGAAATTCAACAGTACCAGACTCAATCCCAAGCTCTCCTTAACATTTGCAATGAGGGACATAGCAAAACGAAGCGAGGAGAGCAGAAATTCTCAGAACTCGTCATGCACGCCCAAGCTTACACGAAGAAGTAGCTGTGTTCCAAGGATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

170

Amino Acids

19.1

Weight (kDa)

8.69

Isoelectric Point (pI)

71.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 55 - 146 7.9e-34 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25780
fragaria_vesca FvH4_2g35380
malus_domestica MD15G1092000.v1.1
prunus_persica Prupe.1G446900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306531
rosa_laevigata RLG00000010788
rosa_multiflora Rmu_sc0002971.1_g000006
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462400 Rh6BG438400 Rh6CG476600 Rh6DG463300
rosa_wichuraiana Rw6G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AcsI RAATTY 2 cut(s) 359, 442
AfaI GTAC 1 cut(s) 370
AgsI TTSAA 1 cut(s) 364
AluBI AGCT 8 cut(s) 166, 275, 302, 329, 336, 388, 472, 489
AluI AGCT 8 cut(s) 166, 275, 302, 329, 336, 388, 472, 489
Alw21I GWGCWC 2 cut(s) 206, 338
Alw44I GTGCAC 1 cut(s) 202
ApaLI GTGCAC 1 cut(s) 202
ApeKI GCWGC 5 cut(s) 114, 117, 120, 123, 126
ApoI RAATTY 2 cut(s) 359, 442
AseI ATTAAT 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 172
AsuNHI GCTAGC 1 cut(s) 166
BaeGI GKGCMC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 338
Bbv12I GWGCWC 2 cut(s) 206, 338
BbvI GCAGC 5 cut(s) 126, 129, 132, 135, 138
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 167
BisI GCNGC 5 cut(s) 115, 118, 121, 124, 127
BlsI GCNGC 5 cut(s) 116, 119, 122, 125, 128
BmtI GCTAGC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 318, 497
Bse1I ACTGG 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 318, 497
BseGI GGATG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 2 cut(s) 317, 461
BseNI ACTGG 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 212, 446
BseSI GKGCMC 1 cut(s) 206
BseXI GCAGC 5 cut(s) 126, 129, 132, 135, 138
BsiHKAI GWGCWC 2 cut(s) 206, 338
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 425
BsmFI GGGAC 1 cut(s) 425
BsmI GAATGC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 206, 338
Bsp143I GATC 3 cut(s) 3, 296, 308
Bsp19I CCATGG 1 cut(s) 318
BspACI CCGC 1 cut(s) 258
BspCNI CTCAG 2 cut(s) 316, 460
BspOI GCTAGC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 1 cut(s) 105
BssECI CCNNGG 2 cut(s) 318, 497
BssMI GATC 3 cut(s) 3, 296, 308
BssT1I CCWWGG 2 cut(s) 318, 497
Bst4CI ACNGT 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 168, 260, 464
BstDEI CTNAG 3 cut(s) 143, 303, 447
BstDSI CCRYGG 1 cut(s) 318
BstF5I GGATG 1 cut(s) 352
BstKTI GATC 3 cut(s) 6, 299, 311
BstMBI GATC 3 cut(s) 3, 296, 308
BstMWI GCNNNNNNNGC 5 cut(s) 120, 123, 126, 218, 435
BstSLI GKGCMC 1 cut(s) 206
BstV1I GCAGC 5 cut(s) 126, 129, 132, 135, 138
BtgI CCRYGG 1 cut(s) 318
BtsCI GGATG 1 cut(s) 352
Cac8I GCNNGC 3 cut(s) 168, 260, 464
Csp6I GTAC 1 cut(s) 369
CviAII CATG 2 cut(s) 319, 459
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 3 cut(s) 143, 303, 447
DpnI GATC 3 cut(s) 5, 298, 310
DpnII GATC 3 cut(s) 3, 296, 308
Ecl136II GAGCTC 1 cut(s) 336
Eco130I CCWWGG 2 cut(s) 318, 497
Eco24I GRGCYC 1 cut(s) 338
Eco53kI GAGCTC 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 336
EcoT14I CCWWGG 2 cut(s) 318, 497
EcoT38I GRGCYC 1 cut(s) 338
ErhI CCWWGG 2 cut(s) 318, 497
FaeI CATG 2 cut(s) 322, 462
FaiI YATR 7 cut(s) 26, 90, 216, 218, 320, 416, 460
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 425
FatI CATG 2 cut(s) 318, 458
FauI CCCGC 1 cut(s) 251
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 5 cut(s) 115, 118, 121, 124, 127
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 1 cut(s) 338
Fsp4HI GCNGC 5 cut(s) 115, 118, 121, 124, 127
FspBI CTAG 1 cut(s) 167
GluI GCNGC 5 cut(s) 115, 118, 121, 124, 127
HapII CCGG 1 cut(s) 355
Hin1II CATG 2 cut(s) 322, 462
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 1 cut(s) 375
HpaII CCGG 1 cut(s) 355
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 5 cut(s) 47, 61, 271, 306, 450
Hpy188III TCNNGA 2 cut(s) 73, 243
Hpy8I GTNNAC 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4V TGCA 3 cut(s) 204, 404, 462
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 123, 126, 218, 435
HpyF3I CTNAG 3 cut(s) 143, 303, 447
Hsp92II CATG 2 cut(s) 322, 462
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 296, 308
LpnPI CCDG 5 cut(s) 86, 228, 328, 368, 385
Lsp1109I GCAGC 5 cut(s) 126, 129, 132, 135, 138
MaeI CTAG 1 cut(s) 167
MalI GATC 3 cut(s) 5, 298, 310
MboI GATC 3 cut(s) 3, 296, 308
MboII GAAGA 2 cut(s) 335, 492
MfeI CAATTG 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 206, 338
MluCI AATT 3 cut(s) 150, 359, 442
MlyI GAGTC 1 cut(s) 369
MnlI CCTC 6 cut(s) 23, 151, 190, 223, 402, 424
MseI TTAA 3 cut(s) 135, 395, 504
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 355
MunI CAATTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 179
MwoI GCNNNNNNNGC 5 cut(s) 120, 123, 126, 218, 435
NcoI CCATGG 1 cut(s) 318
NdeII GATC 3 cut(s) 3, 296, 308
NheI GCTAGC 1 cut(s) 166
NlaIII CATG 2 cut(s) 322, 462
PctI GAATGC 1 cut(s) 179
PkrI GCNGC 5 cut(s) 116, 119, 122, 125, 128
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PshBI ATTAAT 1 cut(s) 135
Psp124BI GAGCTC 1 cut(s) 338
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 1 cut(s) 345
SacI GAGCTC 1 cut(s) 338
SaqAI TTAA 3 cut(s) 135, 395, 504
SatI GCNGC 5 cut(s) 115, 118, 121, 124, 127
Sau3AI GATC 3 cut(s) 3, 296, 308
SchI GAGTC 1 cut(s) 369
SduI GDGCHC 2 cut(s) 206, 338
SetI ASST 9 cut(s) 162, 168, 277, 304, 331, 338, 390, 474, 491
SmiMI CAYNNNNRTG 1 cut(s) 345
Sse9I AATT 3 cut(s) 150, 359, 442
SsiI CCGC 1 cut(s) 258
SspMI CTAG 1 cut(s) 167
SstI GAGCTC 1 cut(s) 338
StyI CCWWGG 2 cut(s) 318, 497
TaaI ACNGT 1 cut(s) 368
TaqI TCGA 1 cut(s) 72
TasI AATT 3 cut(s) 150, 359, 442
Tru1I TTAA 3 cut(s) 135, 395, 504
Tru9I TTAA 3 cut(s) 135, 395, 504
TseI GCWGC 5 cut(s) 114, 117, 120, 123, 126
TspDTI ATGAA 2 cut(s) 41, 206
VneI GTGCAC 1 cut(s) 202
VspI ATTAAT 1 cut(s) 135
XapI RAATTY 2 cut(s) 359, 442
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.