Rh6AG462400

Protein of unknown function (DUF1677)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0017191
Physical Location & Seq
Forward (+)
64557812 .. 64558291
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG462400.1

Sequence Viewer

Length: 480 bp
ATGCAGAATGAGCAAGGGCTTCTCCGAAGGACGAGTTCTGATGTGTCTGTCGAGATGATAGGCAAGTATAAGAGGGAACTGGAATTTTTTAGCAGCAGCAAGATTAATGGTCTTAGCACAATTGATGAGGTGAAGCAAGTGGAATGCGAATGCTGTGGGATGAAAGAGGAATGCACCCAAGCCTATATAGCCAAAGTCGAGGATTCCTTTTCAGGAAAATGGGTTTGTGGGCTTTGTTCCGAAGCTGTGAAAGAAAGAATGACAAGATCAGCTCAGGAATCAGTTGCCATGGAAGAAGCTGTGAGCTCTCACAGGGATGTGTGCCAGAAATTCAACAGTACCAGACTCAATCCCAAGCTCTCCTTAACATTTGCAATGAGGGACATAGCAAAACGAAGCGAGGAGAGCAGAAATTCCAAGAACTCGTCATGCACGCCCAAGCTTACTCGAAGAAGTAGCTGTGTTCCAAGGATTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1677

Protein Analysis

159

Amino Acids

17.96

Weight (kDa)

8.58

Isoelectric Point (pI)

67.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1677 PF07911 44 - 136 3.2e-35 Protein of unknown function (DUF1677)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25780
fragaria_vesca FvH4_2g35380
malus_domestica MD15G1092000.v1.1
prunus_persica Prupe.1G446900_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0306531
rosa_laevigata RLG00000010788
rosa_multiflora Rmu_sc0002971.1_g000006
rosa_rugosa Rorug06G0350100
rosa_samantha Rh6AG462400 Rh6BG438400 Rh6CG476600 Rh6DG463300
rosa_wichuraiana Rw6G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 83, 329, 412
AfaI GTAC 1 cut(s) 340
AgsI TTSAA 1 cut(s) 334
AluBI AGCT 7 cut(s) 245, 272, 299, 306, 358, 442, 459
AluI AGCT 7 cut(s) 245, 272, 299, 306, 358, 442, 459
Alw21I GWGCWC 1 cut(s) 308
ApeKI GCWGC 2 cut(s) 93, 96
ApoI RAATTY 3 cut(s) 83, 329, 412
AseI ATTAAT 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 142
BanII GRGCYC 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 105, 108
BisI GCNGC 2 cut(s) 94, 97
BlsI GCNGC 2 cut(s) 95, 98
Bpu10I CCTNAGC 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 288, 467
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 288, 467
BseGI GGATG 2 cut(s) 165, 322
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 416
BseXI GCAGC 2 cut(s) 105, 108
BsiHKAI GWGCWC 1 cut(s) 308
BslFI GGGAC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 3 cut(s) 149, 155, 176
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 1 cut(s) 266
Bsp19I CCATGG 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 381
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 288, 467
BssMI GATC 1 cut(s) 266
BssT1I CCWWGG 2 cut(s) 288, 467
Bst4CI ACNGT 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 434
BstDEI CTNAG 2 cut(s) 113, 273
BstDSI CCRYGG 1 cut(s) 288
BstF5I GGATG 2 cut(s) 165, 322
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 3 cut(s) 10, 188, 405
BstV1I GCAGC 2 cut(s) 105, 108
BtgI CCRYGG 1 cut(s) 288
BtsCI GGATG 2 cut(s) 165, 322
Cac8I GCNNGC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 339
CviAII CATG 2 cut(s) 289, 429
CviQI GTAC 1 cut(s) 339
DdeI CTNAG 2 cut(s) 113, 273
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 288, 467
Eco24I GRGCYC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 306
EcoICRI GAGCTC 1 cut(s) 306
EcoT14I CCWWGG 2 cut(s) 288, 467
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 2 cut(s) 288, 467
FaeI CATG 2 cut(s) 292, 432
FaiI YATR 6 cut(s) 69, 186, 188, 290, 386, 430
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 1 cut(s) 395
FatI CATG 2 cut(s) 288, 428
Fnu4HI GCNGC 2 cut(s) 94, 97
FokI GGATG 2 cut(s) 172, 329
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 94, 97
GluI GCNGC 2 cut(s) 94, 97
Hin1II CATG 2 cut(s) 292, 432
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 3 cut(s) 203, 278, 345
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 3 cut(s) 26, 40, 241
Hpy188III TCNNGA 3 cut(s) 52, 213, 275
HpyAV CCTTC 1 cut(s) 21
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 4, 174, 374, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 188, 405
HpyF3I CTNAG 2 cut(s) 113, 273
Hsp92II CATG 2 cut(s) 292, 432
Kzo9I GATC 1 cut(s) 266
LpnPI CCDG 6 cut(s) 65, 198, 260, 298, 338, 355
Lsp1109I GCAGC 2 cut(s) 105, 108
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 2 cut(s) 305, 462
MfeI CAATTG 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 4 cut(s) 83, 120, 329, 412
MlyI GAGTC 1 cut(s) 339
MnlI CCTC 6 cut(s) 66, 121, 160, 193, 372, 394
MseI TTAA 3 cut(s) 105, 365, 474
MslI CAYNNNNRTG 1 cut(s) 315
MunI CAATTG 1 cut(s) 120
Mva1269I GAATGC 3 cut(s) 149, 155, 176
MwoI GCNNNNNNNGC 3 cut(s) 10, 188, 405
NcoI CCATGG 1 cut(s) 288
NdeII GATC 1 cut(s) 266
NlaIII CATG 2 cut(s) 292, 432
PctI GAATGC 3 cut(s) 149, 155, 176
PfeI GAWTC 2 cut(s) 203, 278
PkrI GCNGC 2 cut(s) 95, 98
PleI GAGTC 1 cut(s) 339
PpsI GAGTC 1 cut(s) 339
PshBI ATTAAT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 308
RsaI GTAC 1 cut(s) 340
RsaNI GTAC 1 cut(s) 339
RseI CAYNNNNRTG 1 cut(s) 315
SacI GAGCTC 1 cut(s) 308
SaqAI TTAA 3 cut(s) 105, 365, 474
SatI GCNGC 2 cut(s) 94, 97
Sau3AI GATC 1 cut(s) 266
SchI GAGTC 1 cut(s) 339
SduI GDGCHC 1 cut(s) 308
SetI ASST 8 cut(s) 132, 247, 274, 301, 308, 360, 444, 461
SmiMI CAYNNNNRTG 1 cut(s) 315
Sse9I AATT 4 cut(s) 83, 120, 329, 412
SstI GAGCTC 1 cut(s) 308
StyI CCWWGG 2 cut(s) 288, 467
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 3 cut(s) 51, 198, 448
TasI AATT 4 cut(s) 83, 120, 329, 412
TfiI GAWTC 2 cut(s) 203, 278
Tru1I TTAA 3 cut(s) 105, 365, 474
Tru9I TTAA 3 cut(s) 105, 365, 474
TseI GCWGC 2 cut(s) 93, 96
TspDTI ATGAA 1 cut(s) 176
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 3 cut(s) 83, 329, 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.