AT2G26350

Pex2 / Pex12 amino terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005456
Physical Location & Seq
Reverse (-)
11217142 .. 11220541
3400 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26350.3

Sequence Viewer

Length: 1146 bp
ATGAGGCTTAATGGGGATTCGGGTCCGGGTCAGGATGAACCCGGTTCGAGCGGGTTTCACGGCGGAATCAGACGATTCCCGTTAGCAGCTCAGCCGGAGATTATGAGAGCTGCTGAGAAAGACGATCAATACGCTTCTTTCATCCACGAAGCTTGCCGCGATGCCTTCCGACACCTTTTCGGTACAAGAATCGCTCTTGCTTACCAGAAGGAGATGAAGCTACTTGGACAGATGCTTTACTATGTTCTTACGACAGGTTCAGGGCAACAAACTTTAGGAGAGGAATATTGTGACATTATACAGGTTGCAGGGCCTTATGGACTCTCTCCTACACCAGCTAGACGTGCTTTGTTCATATTGTACCAGACCGCAGTTCCATATATCGCAGAGAGAATTAGCACTCGAGCTGCTACGCAAGCAGTCACCTTTGATGAGTCTGATGAGTTTTTTGGTGATAGTCATATCCACTCACCAAGAATGATAGATCTTCCATCTTCATCTCAAGTTGAAACTTCAACTTCTGTAGTATCTAGGTTAAACGATAGACTTATGAGATCGTGGCACCGAGCTATTCAGCGATGGCCTGTGGTTCTTCCTGTTGCCCGCGAAGTCTTACAACTGGTTTTGCGTGCCAATCTGATGCTCTTCTACTTTGAAGGTTTTTATTATCATATATCGAAACGTGCATCCGGGGTTCGTTATGTTTTCATAGGAAAGCAACTGAATCAGAGACCTAGATACCAAATTCTTGGGGTTTTCCTTCTAATCCAATTGTGCATCCTTGCTGCTGAGGGCTTGCGTCGGAGTAATTTGTCATCTATCACTAGCTCCATTCAGCAGGCTTCTATAGGATCTTATCAAACTTCAGGAGGGAGAGGTTTACCTGTTTTAAATGAAGAGGGGAATTTGATAACTTCGGAAGCTGAAAAGGGAAACTGGTCTACCTCCGATTCAACTTCAACGGAGGCAGTAGGGAAATGCACTCTCTGCTTAAGCACCCGTCAGCACCCAACGGCCACTCCTTGTGGTCATGTGTTTTGTTGGAGCTGCATTATGGAATGGTGCAACGAGAAGCAAGAATGCCCTCTTTGTCGAACGCCCAATACCCATTCAAGTTTGGTTTGTTTGTATCATTCTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

381

Amino Acids

42.61

Weight (kDa)

7.57

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 2 - 195 5.4e-34 Pex2 / Pex12 amino terminal region
zf-RING_2 PF13639 255 - 294 3.9e-10 Ring finger domain
zf-C3HC4_3 PF13920 255 - 298 3.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 255 - 293 1.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 256 - 293 1.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_4 PF15227 256 - 293 9.7e-06 zinc finger of C3HC4-type, RING
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 561
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 941
AccII CGCG 2 cut(s) 159, 606
AciI CCGC 5 cut(s) 51, 63, 157, 369, 604
AclWI GGATC 1 cut(s) 859
AcoI YGGCCR 1 cut(s) 1014
AcsI RAATTY 2 cut(s) 744, 904
AcuI CTGAAG 1 cut(s) 849
AfaI GTAC 2 cut(s) 184, 362
AflII CTTAAG 1 cut(s) 991
AgsI TTSAA 6 cut(s) 509, 516, 656, 954, 960, 1113
AjiI CACGTC 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 724
AlwI GGATC 1 cut(s) 859
Ama87I CYCGRG 1 cut(s) 402
AoxI GGCC 3 cut(s) 311, 581, 1014
ApeKI GCWGC 5 cut(s) 86, 110, 407, 785, 1047
ApoI RAATTY 2 cut(s) 744, 904
AspS9I GGNCC 2 cut(s) 23, 311
AsuC2I CCSGG 3 cut(s) 27, 42, 691
AsuHPI GGTGA 3 cut(s) 415, 462, 464
AvaI CYCGRG 1 cut(s) 402
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 561
BbvCI CCTCAGC 1 cut(s) 789
BbvI GCAGC 5 cut(s) 97, 98, 394, 772, 1034
BccI CCATC 2 cut(s) 499, 573
BceAI ACGGC 2 cut(s) 76, 1029
BcnI CCSGG 3 cut(s) 27, 42, 691
BcoDI GTCTC 1 cut(s) 724
BfaI CTAG 4 cut(s) 339, 531, 735, 825
BfmI CTRYAG 2 cut(s) 522, 846
BfrI CTTAAG 1 cut(s) 991
BglII AGATCT 1 cut(s) 484
BisI GCNGC 6 cut(s) 87, 111, 157, 408, 786, 1048
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 6 cut(s) 88, 112, 158, 409, 787, 1049
Bme1390I CCNGG 3 cut(s) 27, 42, 691
Bme18I GGWCC 1 cut(s) 23
BmeT110I CYCGRG 1 cut(s) 402
BmgBI CACGTC 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 23, 311
BmiI GGNNCC 2 cut(s) 24, 563
BmrFI CCNGG 3 cut(s) 27, 42, 691
BmsI GCATC 5 cut(s) 151, 222, 630, 695, 786
Bpu10I CCTNAGC 1 cut(s) 789
Bpu1102I GCTNAGC 1 cut(s) 90
BpuEI CTTGAG 1 cut(s) 486
BpuMI CCSGG 3 cut(s) 27, 42, 691
BsaI GGTCTC 1 cut(s) 724
BsaJI CCNNGG 1 cut(s) 690
BsaXI ACNNNNNCTCC 2 cut(s) 1003, 1033
Bse1I ACTGG 2 cut(s) 624, 941
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 4 cut(s) 40, 141, 686, 777
BseMII CTCAG 3 cut(s) 104, 105, 780
BseNI ACTGG 2 cut(s) 624, 941
BseXI GCAGC 5 cut(s) 97, 98, 394, 772, 1034
Bsh1236I CGCG 2 cut(s) 159, 606
BshFI GGCC 3 cut(s) 313, 583, 1016
BshNI GGYRCC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 402
BsiSI CCGG 4 cut(s) 26, 42, 95, 690
BsmAI GTCTC 1 cut(s) 724
BsmI GAATGC 1 cut(s) 1085
BsnI GGCC 3 cut(s) 313, 583, 1016
Bso31I GGTCTC 1 cut(s) 724
BsoBI CYCGRG 1 cut(s) 402
Bsp143I GATC 4 cut(s) 124, 484, 554, 851
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 5 cut(s) 51, 63, 157, 369, 604
BspANI GGCC 3 cut(s) 313, 583, 1016
BspCNI CTCAG 3 cut(s) 103, 106, 781
BspFNI CGCG 2 cut(s) 159, 606
BspLI GGNNCC 2 cut(s) 24, 563
BspPI GGATC 1 cut(s) 859
BspQI GCTCTTC 1 cut(s) 650
BspT107I GGYRCC 1 cut(s) 561
BspTI CTTAAG 1 cut(s) 991
BspTNI GGTCTC 1 cut(s) 724
BsrBI CCGCTC 1 cut(s) 51
BsrI ACTGG 2 cut(s) 624, 941
BssECI CCNNGG 1 cut(s) 690
BssMI GATC 4 cut(s) 124, 484, 554, 851
Bst6I CTCTTC 2 cut(s) 650, 891
BstAFI CTTAAG 1 cut(s) 991
BstAPI GCANNNNNTGC 1 cut(s) 987
BstC8I GCNNGC 6 cut(s) 154, 417, 604, 630, 797, 840
BstDEI CTNAG 3 cut(s) 90, 114, 789
BstF5I GGATG 4 cut(s) 40, 141, 686, 777
BstFNI CGCG 2 cut(s) 159, 606
BstKTI GATC 4 cut(s) 127, 487, 557, 854
BstMAI GTCTC 1 cut(s) 724
BstMBI GATC 4 cut(s) 124, 484, 554, 851
BstMWI GCNNNNNNNGC 3 cut(s) 344, 416, 987
BstSCI CCNGG 3 cut(s) 25, 40, 689
BstSFI CTRYAG 2 cut(s) 522, 846
BstUI CGCG 2 cut(s) 159, 606
BstV1I GCAGC 5 cut(s) 97, 98, 394, 772, 1034
BstX2I RGATCY 2 cut(s) 484, 851
BstXI CCANNNNNNTGG 1 cut(s) 749
BstYI RGATCY 2 cut(s) 484, 851
BsuRI GGCC 3 cut(s) 313, 583, 1016
BtgZI GCGATG 2 cut(s) 174, 592
BtrI CACGTC 1 cut(s) 344
BtsCI GGATG 4 cut(s) 40, 141, 686, 777
Cac8I GCNNGC 6 cut(s) 154, 417, 604, 630, 797, 840
Cfr13I GGNCC 2 cut(s) 23, 311
CseI GACGC 1 cut(s) 788
Csp6I GTAC 2 cut(s) 183, 361
CspCI CAANNNNNGTGG 2 cut(s) 134, 169
CviAII CATG 1 cut(s) 1031
CviQI GTAC 2 cut(s) 183, 361
DdeI CTNAG 3 cut(s) 90, 114, 789
DpnI GATC 4 cut(s) 126, 486, 556, 853
DpnII GATC 4 cut(s) 124, 484, 554, 851
DraI TTTAAA 1 cut(s) 891
EaeI YGGCCR 1 cut(s) 1014
Eam1104I CTCTTC 2 cut(s) 650, 891
EarI CTCTTC 2 cut(s) 650, 891
EciI GGCGGA 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 724
Eco47I GGWCC 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 849
Eco88I CYCGRG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 311
FaeI CATG 1 cut(s) 1034
FatI CATG 1 cut(s) 1030
FauI CCCGC 2 cut(s) 44, 611
FblI GTMKAC 1 cut(s) 941
Fnu4HI GCNGC 6 cut(s) 87, 111, 157, 408, 786, 1048
FokI GGATG 4 cut(s) 47, 128, 673, 764
Fsp4HI GCNGC 6 cut(s) 87, 111, 157, 408, 786, 1048
FspBI CTAG 4 cut(s) 339, 531, 735, 825
GluI GCNGC 6 cut(s) 87, 111, 157, 408, 786, 1048
HaeIII GGCC 3 cut(s) 313, 583, 1016
HapII CCGG 4 cut(s) 26, 42, 95, 690
HgaI GACGC 1 cut(s) 788
Hin1II CATG 1 cut(s) 1034
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 8 cut(s) 17, 66, 75, 189, 321, 434, 724, 950
HpaII CCGG 4 cut(s) 26, 42, 95, 690
HphI GGTGA 3 cut(s) 415, 462, 464
Hpy166II GTNNAC 2 cut(s) 881, 942
Hpy188I TCNGA 9 cut(s) 71, 170, 439, 639, 729, 804, 919, 949, 1138
Hpy188III TCNNGA 2 cut(s) 32, 867
Hpy8I GTNNAC 2 cut(s) 881, 942
Hpy99I CGWCG 1 cut(s) 804
HpyAV CCTTC 4 cut(s) 175, 202, 650, 770
HpyCH4IV ACGT 2 cut(s) 343, 682
HpyCH4V TGCA 6 cut(s) 308, 686, 777, 981, 1050, 1065
HpyF10VI GCNNNNNNNGC 3 cut(s) 344, 416, 987
HpyF3I CTNAG 3 cut(s) 90, 114, 789
HpySE526I ACGT 2 cut(s) 343, 682
Hsp92II CATG 1 cut(s) 1034
Kzo9I GATC 4 cut(s) 124, 484, 554, 851
LguI GCTCTTC 1 cut(s) 650
LmnI GCTCC 2 cut(s) 833, 1044
Lsp1109I GCAGC 5 cut(s) 97, 98, 394, 772, 1034
LweI GCATC 5 cut(s) 151, 222, 630, 695, 786
MaeI CTAG 4 cut(s) 339, 531, 735, 825
MaeII ACGT 2 cut(s) 343, 682
MaeIII GTNAC 2 cut(s) 290, 421
MalI GATC 4 cut(s) 126, 486, 556, 853
MbiI CCGCTC 1 cut(s) 51
MboI GATC 4 cut(s) 124, 484, 554, 851
MboII GAAGA 5 cut(s) 479, 486, 584, 637, 908
MfeI CAATTG 1 cut(s) 770
MflI RGATCY 2 cut(s) 484, 851
MluCI AATT 5 cut(s) 393, 744, 770, 808, 904
MlyI GAGTC 2 cut(s) 315, 443
MmeI TCCRAC 3 cut(s) 193, 782, 1022
MnlI CCTC 8 cut(s) 274, 784, 863, 869, 892, 955, 958, 1095
MseI TTAA 4 cut(s) 9, 536, 890, 992
MspCI CTTAAG 1 cut(s) 991
MspI CCGG 4 cut(s) 26, 42, 95, 690
MspR9I CCNGG 3 cut(s) 27, 42, 691
MunI CAATTG 1 cut(s) 770
Mva1269I GAATGC 1 cut(s) 1085
MvnI CGCG 2 cut(s) 159, 606
MwoI GCNNNNNNNGC 3 cut(s) 344, 416, 987
NciI CCSGG 3 cut(s) 27, 42, 691
NdeII GATC 4 cut(s) 124, 484, 554, 851
NlaIII CATG 1 cut(s) 1034
NlaIV GGNNCC 2 cut(s) 24, 563
NmuCI GTSAC 2 cut(s) 290, 421
PaeR7I CTCGAG 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 650
PctI GAATGC 1 cut(s) 1085
PfeI GAWTC 6 cut(s) 17, 66, 75, 189, 724, 950
PkrI GCNGC 6 cut(s) 88, 112, 158, 409, 787, 1049
PleI GAGTC 2 cut(s) 315, 442
PpsI GAGTC 2 cut(s) 315, 442
PspN4I GGNNCC 2 cut(s) 24, 563
PspPI GGNCC 2 cut(s) 23, 311
PspXI VCTCGAGB 1 cut(s) 402
PsrI GAACNNNNNNTAC 2 cut(s) 1087, 1119
PsuI RGATCY 2 cut(s) 484, 851
RsaI GTAC 2 cut(s) 184, 362
RsaNI GTAC 2 cut(s) 183, 361
SapI GCTCTTC 1 cut(s) 650
SaqAI TTAA 4 cut(s) 9, 536, 890, 992
SatI GCNGC 6 cut(s) 87, 111, 157, 408, 786, 1048
Sau3AI GATC 4 cut(s) 124, 484, 554, 851
Sau96I GGNCC 2 cut(s) 23, 311
SchI GAGTC 2 cut(s) 315, 443
ScrFI CCNGG 3 cut(s) 27, 42, 691
SfaNI GCATC 5 cut(s) 151, 222, 630, 695, 786
SfcI CTRYAG 2 cut(s) 522, 846
Sfr274I CTCGAG 1 cut(s) 402
SinI GGWCC 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 402
SmlI CTYRAG 3 cut(s) 402, 501, 991
SmoI CTYRAG 3 cut(s) 402, 501, 991
Sse9I AATT 5 cut(s) 393, 744, 770, 808, 904
SsiI CCGC 5 cut(s) 51, 63, 157, 369, 604
SspI AATATT 1 cut(s) 287
SspMI CTAG 4 cut(s) 339, 531, 735, 825
StyD4I CCNGG 3 cut(s) 25, 40, 689
TaiI ACGT 2 cut(s) 346, 685
TaqI TCGA 4 cut(s) 47, 403, 677, 1093
TasI AATT 5 cut(s) 393, 744, 770, 808, 904
TauI GCSGC 1 cut(s) 159
TfiI GAWTC 6 cut(s) 17, 66, 75, 189, 724, 950
Tru1I TTAA 4 cut(s) 9, 536, 890, 992
Tru9I TTAA 4 cut(s) 9, 536, 890, 992
TseFI GTSAC 2 cut(s) 290, 421
TseI GCWGC 5 cut(s) 86, 110, 407, 785, 1047
Tsp45I GTSAC 2 cut(s) 290, 421
TspDTI ATGAA 7 cut(s) 51, 130, 230, 343, 486, 697, 909
TspGWI ACGGA 1 cut(s) 977
Vha464I CTTAAG 1 cut(s) 991
VpaK11BI GGWCC 1 cut(s) 23
XapI RAATTY 2 cut(s) 744, 904
XhoI CTCGAG 1 cut(s) 402
XmiI GTMKAC 1 cut(s) 941
XspI CTAG 4 cut(s) 339, 531, 735, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.