Rorug06G0390200

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005456
Physical Location & Seq
Forward (+)
53427404 .. 53439329
11926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0390200.1

Sequence Viewer

Length: 768 bp
ATGGAAGCATTGAGGCTCCTTCGACGATTGGCTCTACGATGGCGCTACTGCGACCAACTTGCCTTAAGTGGATTCACTTCTCTCAACAGCCCAAATAAGCATATCCTGATACATGGTTCCAATGGTGTAGATATATCAAGCGTTCATGTCAATGCACCTCAACATAGCCCCAACACTGATGGAATTGTTCTTTCTGGGTCAACTCGAGTAAATATATTCGACTCTGTCTTTAAAACTGGTGATGACTGCATTGCACTTAAGAGCGGCTGCTCTTTTGTAAACATAACTCGTGTAGCATGTGGACCAGGTCATGGTATTAGTGTCGGAAGTTTGGGAAGACATCCTAATGATAAAGTTGAAGAAGTGAACGTTAGTAATTGTGTCTTTTACAGAGCTCAGAATGGTGCAAGAATCAAAACAATTAGGGAAGGATCTGATGGGTATATTAGGGCGATTTCGTTTAAGGAAATCAGACTTGTGCAGACTAGAAATCCAATTTTTATTGACCAACACTACTACAGTGGGTGGCACTCTGGCAACGGAGAAATAAAGGTGAGCGACATAACATTCAGGGGTTTCCAAGGAACTTCAGCTTCCGACGCAGCAATAAGACTCGAATGCTCTAACCTGTGGTGCACCAACATTGTAATGGATCATGTCAACATATCTTCAATGATTCCTGGAAAGCCAACCTATTCTTACTGCGAGAATGTCAAGGGAAGATCAAGGTTTACTACACCTGCTGTTCCTTGCCTGGAAAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

255

Amino Acids

28.11

Weight (kDa)

8.99

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 13 - 239 2.8e-61 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 748
Acc36I ACCTGC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 264
AciI CCGC 1 cut(s) 264
AclI AACGTT 1 cut(s) 369
AclWI GGATC 2 cut(s) 439, 660
AcuI CTGAAG 1 cut(s) 573
AfiI CCNNNNNNNGG 1 cut(s) 311
AflII CTTAAG 2 cut(s) 64, 257
AgsI TTSAA 2 cut(s) 359, 672
AjnI CCWGG 3 cut(s) 304, 679, 753
AluBI AGCT 2 cut(s) 395, 593
AluI AGCT 2 cut(s) 395, 593
Alw21I GWGCWC 2 cut(s) 397, 638
Alw44I GTGCAC 1 cut(s) 634
AlwI GGATC 2 cut(s) 439, 660
Ama87I CYCGRG 1 cut(s) 204
ApaLI GTGCAC 1 cut(s) 634
ApeKI GCWGC 2 cut(s) 267, 602
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 251, 565
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 1 cut(s) 302
BaeGI GKGCMC 1 cut(s) 638
BanII GRGCYC 1 cut(s) 397
BauI CACGAG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 2 cut(s) 397, 638
BbvI GCAGC 2 cut(s) 254, 614
BccI CCATC 3 cut(s) 33, 173, 431
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 3 cut(s) 306, 681, 755
BfaI CTAG 1 cut(s) 486
BfmI CTRYAG 1 cut(s) 517
BfoI RGCGCY 1 cut(s) 46
BfrI CTTAAG 2 cut(s) 64, 257
BfuAI ACCTGC 1 cut(s) 748
BisI GCNGC 3 cut(s) 265, 268, 603
BlsI GCNGC 3 cut(s) 266, 269, 604
Bme1390I CCNGG 3 cut(s) 306, 681, 755
Bme18I GGWCC 1 cut(s) 302
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 2 cut(s) 17, 118
BmrFI CCNGG 3 cut(s) 306, 681, 755
BpiI GAAGAC 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 580
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 249
BseBI CCWGG 3 cut(s) 306, 681, 755
BseDI CCNNGG 1 cut(s) 580
BseGI GGATG 1 cut(s) 340
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 249
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 241
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 2 cut(s) 254, 614
BsgI GTGCAG 1 cut(s) 500
BsiHKAI GWGCWC 2 cut(s) 397, 638
BsiHKCI CYCGRG 1 cut(s) 204
BslI CCNNNNNNNGG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 623
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 397, 638
Bsp143I GATC 3 cut(s) 431, 652, 722
BspACI CCGC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 17, 118
BspMI ACCTGC 1 cut(s) 748
BspPI GGATC 2 cut(s) 439, 660
BspTI CTTAAG 2 cut(s) 64, 257
BsrBI CCGCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 249
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 580
BssMI GATC 3 cut(s) 431, 652, 722
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 580
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 306, 681, 755
Bst4CI ACNGT 1 cut(s) 521
BstAFI CTTAAG 2 cut(s) 64, 257
BstDEI CTNAG 1 cut(s) 396
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 3 cut(s) 434, 655, 725
BstMBI GATC 3 cut(s) 431, 652, 722
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNI CCWGG 3 cut(s) 306, 681, 755
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 3 cut(s) 304, 679, 753
BstSFI CTRYAG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 2 cut(s) 254, 614
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BtsCI GGATG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 174, 526
BveI ACCTGC 1 cut(s) 748
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 302
CseI GACGC 1 cut(s) 608
CsiI ACCWGGT 1 cut(s) 304
CviAII CATG 5 cut(s) 113, 146, 297, 311, 656
CviJI RGCY 8 cut(s) 16, 32, 90, 168, 267, 395, 593, 688
CviKI_1 RGCY 8 cut(s) 16, 32, 90, 168, 267, 395, 593, 688
DdeI CTNAG 1 cut(s) 396
DpnI GATC 3 cut(s) 433, 654, 724
DpnII GATC 3 cut(s) 431, 652, 722
DraI TTTAAA 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 395
Eco57I CTGAAG 1 cut(s) 573
Eco88I CYCGRG 1 cut(s) 204
EcoICRI GAGCTC 1 cut(s) 395
EcoRII CCWGG 3 cut(s) 304, 679, 753
EcoT14I CCWWGG 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 397
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 5 cut(s) 116, 149, 300, 314, 659
FatI CATG 5 cut(s) 112, 145, 296, 310, 655
Fnu4HI GCNGC 3 cut(s) 265, 268, 603
FokI GGATG 1 cut(s) 327
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 3 cut(s) 265, 268, 603
FspBI CTAG 1 cut(s) 486
GlaI GCGC 1 cut(s) 44
GluI GCNGC 3 cut(s) 265, 268, 603
HaeII RGCGCY 1 cut(s) 46
HgaI GACGC 1 cut(s) 608
HhaI GCGC 1 cut(s) 45
Hin1II CATG 5 cut(s) 116, 149, 300, 314, 659
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 2 cut(s) 201, 661
HindII GTYRAC 2 cut(s) 201, 661
HinfI GANTC 5 cut(s) 72, 221, 411, 612, 676
HphI GGTGA 2 cut(s) 251, 565
Hpy166II GTNNAC 7 cut(s) 201, 280, 302, 367, 636, 661, 732
Hpy188I TCNGA 5 cut(s) 326, 399, 436, 473, 598
Hpy188III TCNNGA 1 cut(s) 106
Hpy8I GTNNAC 7 cut(s) 201, 280, 302, 367, 636, 661, 732
Hpy99I CGWCG 2 cut(s) 27, 602
HpyAV CCTTC 2 cut(s) 29, 422
HpyCH4III ACNGT 1 cut(s) 521
HpyCH4IV ACGT 1 cut(s) 369
HpyCH4V TGCA 6 cut(s) 155, 249, 254, 407, 481, 636
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 369
Hsp92II CATG 5 cut(s) 116, 149, 300, 314, 659
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 3 cut(s) 431, 652, 722
LmnI GCTCC 1 cut(s) 21
Lsp1109I GCAGC 2 cut(s) 254, 614
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 1 cut(s) 486
MaeII ACGT 1 cut(s) 369
MalI GATC 3 cut(s) 433, 654, 724
MbiI CCGCTC 1 cut(s) 264
MboI GATC 3 cut(s) 431, 652, 722
MboII GAAGA 4 cut(s) 348, 371, 660, 732
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 2 cut(s) 397, 638
MluCI AATT 4 cut(s) 183, 376, 420, 495
MlyI GAGTC 2 cut(s) 215, 606
MmeI TCCRAC 2 cut(s) 304, 621
MnlI CCTC 2 cut(s) 6, 168
MseI TTAA 4 cut(s) 65, 231, 258, 462
MslI CAYNNNNRTG 3 cut(s) 150, 345, 647
MspCI CTTAAG 2 cut(s) 64, 257
MspR9I CCNGG 3 cut(s) 306, 681, 755
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 3 cut(s) 306, 681, 755
MwoI GCNNNNNNNGC 1 cut(s) 599
NdeII GATC 3 cut(s) 431, 652, 722
NlaIII CATG 5 cut(s) 116, 149, 300, 314, 659
NlaIV GGNNCC 2 cut(s) 17, 118
NspI RCATGY 1 cut(s) 300
PaeR7I CTCGAG 1 cut(s) 204
PaqCI CACCTGC 1 cut(s) 748
PctI GAATGC 1 cut(s) 623
PfeI GAWTC 3 cut(s) 72, 411, 676
PflFI GACNNNGTC 2 cut(s) 224, 306
PflMI CCANNNNNTGG 1 cut(s) 311
PfoI TCCNGGA 1 cut(s) 679
PkrI GCNGC 3 cut(s) 266, 269, 604
PleI GAGTC 2 cut(s) 215, 606
PpsI GAGTC 2 cut(s) 215, 606
Psp124BI GAGCTC 1 cut(s) 397
Psp1406I AACGTT 1 cut(s) 369
Psp6I CCWGG 3 cut(s) 304, 679, 753
PspGI CCWGG 3 cut(s) 304, 679, 753
PspN4I GGNNCC 2 cut(s) 17, 118
PspPI GGNCC 1 cut(s) 302
PspXI VCTCGAGB 1 cut(s) 204
PsuI RGATCY 1 cut(s) 431
PsyI GACNNNGTC 2 cut(s) 224, 306
RseI CAYNNNNRTG 3 cut(s) 150, 345, 647
SacI GAGCTC 1 cut(s) 397
SaqAI TTAA 4 cut(s) 65, 231, 258, 462
SatI GCNGC 3 cut(s) 265, 268, 603
Sau3AI GATC 3 cut(s) 431, 652, 722
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 2 cut(s) 215, 606
ScrFI CCNGG 3 cut(s) 306, 681, 755
SduI GDGCHC 2 cut(s) 397, 638
SexAI ACCWGGT 1 cut(s) 304
SfcI CTRYAG 1 cut(s) 517
Sfr274I CTCGAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 302
SlaI CTCGAG 1 cut(s) 204
SmiMI CAYNNNNRTG 3 cut(s) 150, 345, 647
SmlI CTYRAG 3 cut(s) 64, 204, 257
SmoI CTYRAG 3 cut(s) 64, 204, 257
Sse9I AATT 4 cut(s) 183, 376, 420, 495
SsiI CCGC 1 cut(s) 264
SspMI CTAG 1 cut(s) 486
SstI GAGCTC 1 cut(s) 397
StyD4I CCNGG 3 cut(s) 304, 679, 753
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 1 cut(s) 521
TaiI ACGT 1 cut(s) 372
TaqI TCGA 4 cut(s) 22, 205, 219, 615
TasI AATT 4 cut(s) 183, 376, 420, 495
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 3 cut(s) 72, 411, 676
Tru1I TTAA 4 cut(s) 65, 231, 258, 462
Tru9I TTAA 4 cut(s) 65, 231, 258, 462
TscAI CASTG 2 cut(s) 181, 526
TseI GCWGC 2 cut(s) 267, 602
TspDTI ATGAA 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 555
TspRI CASTG 2 cut(s) 181, 526
Tth111I GACNNNGTC 2 cut(s) 224, 306
Van91I CCANNNNNTGG 1 cut(s) 311
Vha464I CTTAAG 2 cut(s) 64, 257
VneI GTGCAC 1 cut(s) 634
VpaK11BI GGWCC 1 cut(s) 302
XceI RCATGY 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XhoI CTCGAG 1 cut(s) 204
XspI CTAG 1 cut(s) 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.