FvH4_2g31140

Peroxisome biogenesis factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
23956045 .. 23959405
3361 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31140.t4

Sequence Viewer

Length: 1191 bp
ATGGGTTTAAACGAAGCAACCGGGTCGGGCCAGCAAGCCGGGCCGGGCGTAGATGAGGCGGGTCCTAGTACCAGTAGCAACCCGAGCTCGGCACGGCGTTTCCCACTGGCGGCTCAGCCGGAGGTCATGAGAGCCGCCGAGAAAGACGACCAGTACGCCTCCTTCGTCTACGACGCTTGCCGCGACGCCTTCCGCCACCTCTTCGGTACAAGAATTGCTGTGGCTTACCAGAACGAGACGAAGCTTCTTGGGCAAATGCTCTATTACATTTTGACTACAGGATCTGGGCAGCAAACCCTGGGAGAAGAGTACTGTGATATCACTCAGGTTGCAGGGGCTTATGGGCTGCCACCAACGCCAGCGAGGCGCGCACTTTTCATTGTGTACCAGACGGCTCTTCCTTATATTGCAGAAAGAATTAGTTCTCGAGCTGCTAACCGCGGCCTTCTCCTGGCTGATTCCCAGTCTGATGAGGTTTACAGCATCAGTGCTTTGATGAGCAATGATGCACAGTCTTCTTCAATCAGTCGTGGGGTGTCTTCTTCTGCACCGCTGGAGTCTGTTTCAGCGTTTAAAAGATTGAAGCAGAGGTTGAATGGATTGTGGCTTTCTGCAGTTCGGAGATGGCCTACGGTTCTCCCGATTGCTCGAGAGTTTTTGCAATTGGTTATACGTGCCAACCTCATGTTCTTTTACTTTGAAGGTCTCTATTATCATATATCGAAACGTGCAGCTGGCATTCGTTATGTGTTCATTGGAAAACCATCTAACCAAAGGCCTAGATACCAAATTCTGGGCATATTTCTACTGATTCAGCTTTGTATCATCGCTGCTGAAGGATTACGGCGTAGCAATTTATCCTCTATAGCAACTTCAGCTCAGCAGACCTTTGGCACACACCAAACTTCATCAGGTCGAGATTTGCCTGTGCTAAATGAGGAGGGTAATTTGATATCAGTGAATGGTGCCAAGGGTAGTTCGTTTTCTGATTCATCATCTTCAGAGGTGAGTGGAATCAGCAAATGCACGCTCTGTTTGAGCAATCGCCAACACCCTACAGCCACACCTTGCGGCCATGTATTCTGCTGGAGCTGCATTATGGAATGGTGCAACGAAAAACCTGAATGCCCCCTCTGCCGGACTCCTATAACTCATTCAAGCCTAGTCTGCTTGTACCATTCGGACTTTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

397

Amino Acids

43.38

Weight (kDa)

8.56

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 49 - 282 2.9e-42 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 965
AccB7I CCANNNNNTGG 1 cut(s) 793
AccI GTMKAC 1 cut(s) 168
AccII CGCG 3 cut(s) 183, 369, 441
AciI CCGC 9 cut(s) 59, 110, 135, 181, 193, 439, 441, 551, 1071
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 1 cut(s) 1072
AcsI RAATTY 1 cut(s) 789
AcuI CTGAAG 3 cut(s) 855, 858, 984
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 6 cut(s) 70, 155, 208, 311, 386, 1175
AfiI CCNNNNNNNGG 5 cut(s) 88, 109, 451, 793, 1137
AgsI TTSAA 5 cut(s) 522, 583, 595, 701, 1158
AjnI CCWGG 2 cut(s) 297, 450
AjuI GAANNNNNNNTTGG 2 cut(s) 671, 703
AluBI AGCT 7 cut(s) 87, 244, 431, 734, 817, 878, 1092
AluI AGCT 7 cut(s) 87, 244, 431, 734, 817, 878, 1092
Alw21I GWGCWC 1 cut(s) 89
Alw26I GTCTC 2 cut(s) 230, 710
AlwI GGATC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 3 cut(s) 82, 426, 648
AoxI GGCC 6 cut(s) 28, 41, 442, 626, 776, 1072
ApeKI GCWGC 6 cut(s) 289, 346, 431, 731, 830, 1092
ApoI RAATTY 1 cut(s) 789
Asp700I GAANNNNTTC 1 cut(s) 421
AspLEI GCGC 2 cut(s) 369, 371
AspS9I GGNCC 3 cut(s) 28, 41, 62
AsuC2I CCSGG 3 cut(s) 22, 40, 45
AsuHPI GGTGA 1 cut(s) 1018
AvaI CYCGRG 3 cut(s) 82, 426, 648
AvaII GGWCC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 965
BanII GRGCYC 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 146, 178
BbsI GAAGAC 2 cut(s) 507, 531
Bbv12I GWGCWC 1 cut(s) 89
BbvI GCAGC 6 cut(s) 301, 333, 418, 743, 817, 1079
BccI CCATC 2 cut(s) 618, 772
BceAI ACGGC 3 cut(s) 110, 408, 860
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 2 cut(s) 299, 452
BcnI CCSGG 3 cut(s) 22, 40, 45
BcoDI GTCTC 2 cut(s) 230, 710
BfaI CTAG 3 cut(s) 66, 780, 1163
BfmI CTRYAG 4 cut(s) 276, 612, 864, 1056
BglI GCCNNNNNGGC 1 cut(s) 364
BlpI GCTNAGC 2 cut(s) 114, 879
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 5 cut(s) 22, 40, 45, 299, 452
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 3 cut(s) 82, 426, 648
BmgT120I GGNCC 3 cut(s) 28, 41, 62
BmiI GGNNCC 2 cut(s) 63, 967
BmrFI CCNGG 5 cut(s) 22, 40, 45, 299, 452
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 492, 496
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 2 cut(s) 507, 531
BpmI CTGGAG 2 cut(s) 575, 1108
Bpu1102I GCTNAGC 2 cut(s) 114, 879
BpuMI CCSGG 3 cut(s) 22, 40, 45
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 4 cut(s) 297, 298, 439, 969
Bsc4I CCNNNNNNNGG 5 cut(s) 88, 109, 451, 793, 1137
Bse1I ACTGG 4 cut(s) 72, 111, 151, 463
Bse3DI GCAATG 1 cut(s) 508
BseBI CCWGG 2 cut(s) 299, 452
BseDI CCNNGG 4 cut(s) 297, 298, 439, 969
BseLI CCNNNNNNNGG 5 cut(s) 88, 109, 451, 793, 1137
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 3 cut(s) 128, 338, 893
BseNI ACTGG 4 cut(s) 72, 111, 151, 463
BsePI GCGCGC 1 cut(s) 367
BseRI GAGGAG 1 cut(s) 953
BseXI GCAGC 6 cut(s) 301, 333, 418, 743, 817, 1079
BsgI GTGCAG 2 cut(s) 531, 750
Bsh1236I CGCG 3 cut(s) 183, 369, 441
BshFI GGCC 6 cut(s) 30, 43, 444, 628, 778, 1074
BshNI GGYRCC 1 cut(s) 965
BsiHKAI GWGCWC 1 cut(s) 89
BsiHKCI CYCGRG 3 cut(s) 82, 426, 648
BsiSI CCGG 5 cut(s) 21, 39, 44, 119, 1138
BslI CCNNNNNNNGG 5 cut(s) 88, 109, 451, 793, 1137
BsmAI GTCTC 2 cut(s) 230, 710
BsmBI CGTCTC 1 cut(s) 230
BsmI GAATGC 2 cut(s) 738, 1130
BsnI GGCC 6 cut(s) 30, 43, 444, 628, 778, 1074
Bso31I GGTCTC 1 cut(s) 710
BsoBI CYCGRG 3 cut(s) 82, 426, 648
Bsp1286I GDGCHC 1 cut(s) 89
Bsp143I GATC 1 cut(s) 281
Bsp1720I GCTNAGC 2 cut(s) 114, 879
BspACI CCGC 9 cut(s) 59, 110, 135, 181, 193, 439, 441, 551, 1071
BspANI GGCC 6 cut(s) 30, 43, 444, 628, 778, 1074
BspCNI CTCAG 3 cut(s) 127, 337, 892
BspFNI CGCG 3 cut(s) 183, 369, 441
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 63, 967
BspMAI CTGCAG 1 cut(s) 616
BspPI GGATC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 402
BspT107I GGYRCC 1 cut(s) 965
BspTNI GGTCTC 1 cut(s) 710
BsrDI GCAATG 1 cut(s) 508
BsrI ACTGG 4 cut(s) 72, 111, 151, 463
BssECI CCNNGG 4 cut(s) 297, 298, 439, 969
BssHII GCGCGC 1 cut(s) 367
BssMI GATC 1 cut(s) 281
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 969
Bst2UI CCWGG 2 cut(s) 299, 452
Bst4CI ACNGT 3 cut(s) 314, 513, 634
Bst6I CTCTTC 3 cut(s) 206, 300, 402
BstACI GRCGYC 1 cut(s) 186
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 7 cut(s) 32, 36, 178, 360, 369, 736, 1028
BstDEI CTNAG 3 cut(s) 114, 324, 879
BstDSI CCRYGG 1 cut(s) 439
BstFNI CGCG 3 cut(s) 183, 369, 441
BstHHI GCGC 2 cut(s) 369, 371
BstKTI GATC 1 cut(s) 284
BstMAI GTCTC 2 cut(s) 230, 710
BstMBI GATC 1 cut(s) 281
BstNI CCWGG 2 cut(s) 299, 452
BstSCI CCNGG 5 cut(s) 20, 38, 43, 297, 450
BstSFI CTRYAG 4 cut(s) 276, 612, 864, 1056
BstUI CGCG 3 cut(s) 183, 369, 441
BstV1I GCAGC 6 cut(s) 301, 333, 418, 743, 817, 1079
BstV2I GAAGAC 2 cut(s) 507, 531
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 6 cut(s) 30, 43, 444, 628, 778, 1074
BtgI CCRYGG 1 cut(s) 439
BtgZI GCGATG 1 cut(s) 811
BtsIMutI CAGTG 3 cut(s) 104, 493, 963
Cac8I GCNNGC 7 cut(s) 32, 36, 178, 360, 369, 736, 1028
CaiI CAGNNNCTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 126
CfoI GCGC 2 cut(s) 369, 371
Cfr13I GGNCC 3 cut(s) 28, 41, 62
Cfr42I CCGCGG 1 cut(s) 442
CseI GACGC 2 cut(s) 182, 194
Csp6I GTAC 6 cut(s) 69, 154, 207, 310, 385, 1174
CviAII CATG 3 cut(s) 127, 685, 1076
CviQI GTAC 6 cut(s) 69, 154, 207, 310, 385, 1174
DdeI CTNAG 3 cut(s) 114, 324, 879
DpnI GATC 1 cut(s) 283
DpnII GATC 1 cut(s) 281
DraI TTTAAA 2 cut(s) 9, 574
EaeI YGGCCR 1 cut(s) 1072
Eam1104I CTCTTC 3 cut(s) 206, 300, 402
EarI CTCTTC 3 cut(s) 206, 300, 402
EciI GGCGGA 1 cut(s) 182
Ecl136II GAGCTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 969
Eco147I AGGCCT 1 cut(s) 778
Eco24I GRGCYC 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 710
Eco32I GATATC 2 cut(s) 319, 954
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 87
Eco57I CTGAAG 3 cut(s) 855, 858, 984
Eco88I CYCGRG 3 cut(s) 82, 426, 648
EcoICRI GAGCTC 1 cut(s) 87
EcoO109I RGGNCCY 1 cut(s) 62
EcoRII CCWGG 2 cut(s) 297, 450
EcoRV GATATC 2 cut(s) 319, 954
EcoT14I CCWWGG 1 cut(s) 969
EcoT38I GRGCYC 1 cut(s) 89
ErhI CCWWGG 1 cut(s) 969
Esp3I CGTCTC 1 cut(s) 230
FaeI CATG 3 cut(s) 130, 688, 1079
FatI CATG 3 cut(s) 126, 684, 1075
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 89
FspBI CTAG 3 cut(s) 66, 780, 1163
GlaI GCGC 2 cut(s) 368, 370
GsuI CTGGAG 2 cut(s) 575, 1108
HaeIII GGCC 6 cut(s) 30, 43, 444, 628, 778, 1074
HapII CCGG 5 cut(s) 21, 39, 44, 119, 1138
HgaI GACGC 2 cut(s) 182, 194
HhaI GCGC 2 cut(s) 369, 371
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 130, 688, 1079
Hin6I GCGC 2 cut(s) 367, 369
HinP1I GCGC 2 cut(s) 367, 369
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 6 cut(s) 458, 557, 811, 989, 1014, 1141
HpaII CCGG 5 cut(s) 21, 39, 44, 119, 1138
HphI GGTGA 1 cut(s) 1018
Hpy166II GTNNAC 3 cut(s) 169, 385, 478
Hpy188I TCNGA 5 cut(s) 469, 621, 988, 1003, 1183
Hpy188III TCNNGA 5 cut(s) 127, 426, 640, 650, 917
Hpy8I GTNNAC 3 cut(s) 169, 385, 478
Hpy99I CGWCG 2 cut(s) 176, 188
HpyAV CCTTC 5 cut(s) 172, 199, 455, 695, 830
HpyCH4III ACNGT 3 cut(s) 314, 513, 634
HpyCH4IV ACGT 2 cut(s) 673, 727
HpyF3I CTNAG 3 cut(s) 114, 324, 879
HpySE526I ACGT 2 cut(s) 673, 727
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 130, 688, 1079
HspAI GCGC 2 cut(s) 367, 369
KspI CCGCGG 1 cut(s) 442
Kzo9I GATC 1 cut(s) 281
LguI GCTCTTC 1 cut(s) 402
LmnI GCTCC 1 cut(s) 1089
Lsp1109I GCAGC 6 cut(s) 301, 333, 418, 743, 817, 1079
LweI GCATC 2 cut(s) 492, 496
MaeI CTAG 3 cut(s) 66, 780, 1163
MaeII ACGT 2 cut(s) 673, 727
MalI GATC 1 cut(s) 283
MboI GATC 1 cut(s) 281
MboII GAAGA 8 cut(s) 193, 317, 389, 507, 510, 531, 534, 990
MfeI CAATTG 1 cut(s) 662
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 6 cut(s) 213, 417, 662, 789, 853, 946
MlyI GAGTC 2 cut(s) 566, 1135
MroXI GAANNNNTTC 1 cut(s) 421
MseI TTAA 2 cut(s) 8, 573
MspA1I CMGCKG 3 cut(s) 441, 553, 734
MspI CCGG 5 cut(s) 21, 39, 44, 119, 1138
MspR9I CCNGG 5 cut(s) 22, 40, 45, 299, 452
MssI GTTTAAAC 1 cut(s) 9
MunI CAATTG 1 cut(s) 662
Mva1269I GAATGC 2 cut(s) 738, 1130
MvaI CCWGG 2 cut(s) 299, 452
MvnI CGCG 3 cut(s) 183, 369, 441
NciI CCSGG 3 cut(s) 22, 40, 45
NdeII GATC 1 cut(s) 281
NlaIII CATG 3 cut(s) 130, 688, 1079
NlaIV GGNNCC 2 cut(s) 63, 967
NmeAIII GCCGAG 2 cut(s) 68, 163
PaeR7I CTCGAG 2 cut(s) 426, 648
PagI TCATGA 1 cut(s) 126
PasI CCCWGGG 1 cut(s) 298
PauI GCGCGC 1 cut(s) 367
PceI AGGCCT 1 cut(s) 778
PciSI GCTCTTC 1 cut(s) 402
PcsI WCGNNNNNNNCGW 3 cut(s) 162, 180, 638
PctI GAATGC 2 cut(s) 738, 1130
PdmI GAANNNNTTC 1 cut(s) 421
PfeI GAWTC 4 cut(s) 458, 811, 989, 1014
PflMI CCANNNNNTGG 1 cut(s) 793
PleI GAGTC 2 cut(s) 565, 1135
PmeI GTTTAAAC 1 cut(s) 9
PpsI GAGTC 2 cut(s) 565, 1135
Ppu21I YACGTR 1 cut(s) 674
PpuMI RGGWCCY 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 297, 450
PspGI CCWGG 2 cut(s) 297, 450
PspN4I GGNNCC 2 cut(s) 63, 967
PspPI GGNCC 3 cut(s) 28, 41, 62
PspPPI RGGWCCY 1 cut(s) 62
PstI CTGCAG 1 cut(s) 616
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 281
PteI GCGCGC 1 cut(s) 367
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 6 cut(s) 70, 155, 208, 311, 386, 1175
RsaNI GTAC 6 cut(s) 69, 154, 207, 310, 385, 1174
SacI GAGCTC 1 cut(s) 89
SacII CCGCGG 1 cut(s) 442
SapI GCTCTTC 1 cut(s) 402
SaqAI TTAA 2 cut(s) 8, 573
Sau3AI GATC 1 cut(s) 281
Sau96I GGNCC 3 cut(s) 28, 41, 62
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 2 cut(s) 566, 1135
ScrFI CCNGG 5 cut(s) 22, 40, 45, 299, 452
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 2 cut(s) 492, 496
SfcI CTRYAG 4 cut(s) 276, 612, 864, 1056
Sfr274I CTCGAG 2 cut(s) 426, 648
Sfr303I CCGCGG 1 cut(s) 442
SgrBI CCGCGG 1 cut(s) 442
SinI GGWCC 1 cut(s) 62
SlaI CTCGAG 2 cut(s) 426, 648
SmlI CTYRAG 2 cut(s) 426, 648
SmoI CTYRAG 2 cut(s) 426, 648
Sse9I AATT 6 cut(s) 213, 417, 662, 789, 853, 946
SseBI AGGCCT 1 cut(s) 778
SsiI CCGC 9 cut(s) 59, 110, 135, 181, 193, 439, 441, 551, 1071
SspMI CTAG 3 cut(s) 66, 780, 1163
SstI GAGCTC 1 cut(s) 89
StuI AGGCCT 1 cut(s) 778
StyD4I CCNGG 5 cut(s) 20, 38, 43, 297, 450
StyI CCWWGG 1 cut(s) 969
TaaI ACNGT 3 cut(s) 314, 513, 634
TaiI ACGT 2 cut(s) 676, 730
TaqI TCGA 4 cut(s) 427, 649, 722, 916
TasI AATT 6 cut(s) 213, 417, 662, 789, 853, 946
TatI WGTACW 1 cut(s) 309
TauI GCSGC 5 cut(s) 113, 137, 183, 444, 1074
TfiI GAWTC 4 cut(s) 458, 811, 989, 1014
Tru1I TTAA 2 cut(s) 8, 573
Tru9I TTAA 2 cut(s) 8, 573
TscAI CASTG 3 cut(s) 111, 493, 963
TseI GCWGC 6 cut(s) 289, 346, 431, 731, 830, 1092
TspDTI ATGAA 4 cut(s) 367, 742, 897, 981
TspRI CASTG 3 cut(s) 111, 493, 963
Van91I CCANNNNNTGG 1 cut(s) 793
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 789
XhoI CTCGAG 2 cut(s) 426, 648
XmiI GTMKAC 1 cut(s) 168
XmnI GAANNNNTTC 1 cut(s) 421
XspI CTAG 3 cut(s) 66, 780, 1163
ZrmI AGTACT 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.