Rh6BG516300

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005456
Physical Location & Seq
Reverse (-)
71030037 .. 71033581
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG516300.1

Sequence Viewer

Length: 897 bp
ATGAGTAGTAACGAAACAACCGGGTCGGGCCAGCAGGCCGGGCCGAGCGGAGGACGCCGTTTCCCACTGGCGGCTCAGCCGGAGGTCATGAGAGCCGCCGAAAAGGACGACCAGTACGCCTCCTTCGTCTACGACGCTTGCCGCGACGCCTTCCGCCACCTCTTTGGTACAAGAATTGCTGTGGCTTACCAGAACGAGACAAAGCTTCTCGGGCAAATGCTCTATTACATTTTGACTACAGGGTCGGGCCAGCAAACCCTGGGAGAAGAGTACTGCGATATCACTCAGGTTGCAGGGCCCTATGGGCTGCCTCCAACACCAGCAAGGCGTGCACTTTTCATTGTGTACCAGACGGCTCTTCCTTATATTGCAGAAAGAATTAGTTCTCGAGCTGCTAATCGTGGCATTCTCCTTGCTGATTCCCAGTCTGATCAGGTTTACAGCATCAGTGCTTTGATGAGCAATGATGCTCAGTCTTCTTCAAGCACTCGTGCCGTGTCTTCCTCCACGCCGCCGGCGTCTGCTTCAGCTCTCAAAAGATTGAAGCAGAGATTGAATGCATTGTGGCTTTCTGCAGTTCGGAAATGGCCTACGGTTCTCCCTATAGCTCGAGAGTTTTTGCAATTGATTATACGTGCCAACCTGATGTTCTTTTACTTTGAAGGTCTCTATTATCATATATCGAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAACCATCTAACCAAAGGCCTAGATACCAAATTCTGGGCATATTCCTACTGATTCAGCTTTGTATCATTGCTGCTGAAGGACTACGGCGTAGCAATTTATCCTCTATAGCAACTTCAGCTCAGCAGACCTTTGGTGCACACCAAACTTCATCAGGTCAATATCTTCATAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

298

Amino Acids

32.88

Weight (kDa)

9.75

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex2_Pex12 PF04757 36 - 269 3.8e-43 Pex2 / Pex12 amino terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
AccB7I CCANNNNNTGG 1 cut(s) 754
AccBSI CCGCTC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 144
AciI CCGC 6 cut(s) 48, 71, 96, 142, 154, 512
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 3 cut(s) 510, 816, 819
AcyI GRCGYC 3 cut(s) 55, 147, 518
AfaI GTAC 4 cut(s) 116, 169, 272, 347
AfiI CCNNNNNNNGG 3 cut(s) 50, 70, 754
AgsI TTSAA 4 cut(s) 483, 544, 556, 662
AjnI CCWGG 1 cut(s) 258
AjuI GAANNNNNNNTTGG 2 cut(s) 632, 664
AluBI AGCT 6 cut(s) 205, 392, 530, 608, 778, 839
AluI AGCT 6 cut(s) 205, 392, 530, 608, 778, 839
Alw21I GWGCWC 2 cut(s) 334, 859
Alw26I GTCTC 2 cut(s) 191, 671
Alw44I GTGCAC 2 cut(s) 330, 855
Ama87I CYCGRG 3 cut(s) 209, 387, 609
AoxI GGCC 7 cut(s) 28, 36, 41, 247, 296, 587, 737
ApaI GGGCCC 1 cut(s) 300
ApaLI GTGCAC 2 cut(s) 330, 855
ApeKI GCWGC 4 cut(s) 307, 392, 692, 791
ApoI RAATTY 1 cut(s) 750
Asp700I GAANNNNTTC 1 cut(s) 382
AspS9I GGNCC 5 cut(s) 28, 41, 247, 296, 297
AsuC2I CCSGG 2 cut(s) 22, 40
AvaI CYCGRG 3 cut(s) 209, 387, 609
BaeGI GKGCMC 3 cut(s) 300, 334, 859
BanII GRGCYC 1 cut(s) 300
BarI GAAGNNNNNNTAC 2 cut(s) 107, 139
BauI CACGAG 1 cut(s) 489
BbsI GAAGAC 2 cut(s) 468, 492
Bbv12I GWGCWC 2 cut(s) 334, 859
BbvI GCAGC 4 cut(s) 294, 379, 679, 778
BccI CCATC 1 cut(s) 733
BceAI ACGGC 4 cut(s) 42, 369, 479, 821
BciT130I CCWGG 1 cut(s) 260
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 2 cut(s) 22, 40
BcoDI GTCTC 2 cut(s) 191, 671
BfaI CTAG 1 cut(s) 741
BfmI CTRYAG 5 cut(s) 237, 573, 603, 693, 825
BglI GCCNNNNNGGC 1 cut(s) 304
BisI GCNGC 8 cut(s) 72, 96, 142, 308, 393, 512, 693, 792
BlpI GCTNAGC 2 cut(s) 75, 840
BlsI GCNGC 8 cut(s) 73, 97, 143, 309, 394, 513, 694, 793
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 3 cut(s) 22, 40, 260
BmeT110I CYCGRG 3 cut(s) 209, 387, 609
BmgT120I GGNCC 5 cut(s) 28, 41, 247, 296, 297
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 3 cut(s) 22, 40, 260
BmrI ACTGGG 1 cut(s) 418
BmsI GCATC 2 cut(s) 453, 457
BmuI ACTGGG 1 cut(s) 418
BpiI GAAGAC 2 cut(s) 468, 492
Bpu1102I GCTNAGC 2 cut(s) 75, 840
BpuMI CCSGG 2 cut(s) 22, 40
BsaAI YACGTR 1 cut(s) 635
BsaHI GRCGYC 3 cut(s) 55, 147, 518
BsaI GGTCTC 1 cut(s) 671
BsaJI CCNNGG 2 cut(s) 258, 259
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 70, 754
Bse118I RCCGGY 1 cut(s) 514
Bse1I ACTGG 3 cut(s) 72, 112, 424
Bse3DI GCAATG 2 cut(s) 469, 786
BseBI CCWGG 1 cut(s) 260
BseDI CCNNGG 2 cut(s) 258, 259
BseLI CCNNNNNNNGG 3 cut(s) 50, 70, 754
BseMI GCAATG 2 cut(s) 469, 786
BseMII CTCAG 4 cut(s) 89, 299, 485, 854
BseNI ACTGG 3 cut(s) 72, 112, 424
BseSI GKGCMC 3 cut(s) 300, 334, 859
BseXI GCAGC 4 cut(s) 294, 379, 679, 778
Bsh1236I CGCG 1 cut(s) 144
BshFI GGCC 7 cut(s) 30, 38, 43, 249, 298, 589, 739
BsiHKAI GWGCWC 2 cut(s) 334, 859
BsiHKCI CYCGRG 3 cut(s) 209, 387, 609
BsiSI CCGG 4 cut(s) 21, 39, 80, 515
BslI CCNNNNNNNGG 3 cut(s) 50, 70, 754
BsmAI GTCTC 2 cut(s) 191, 671
BsmI GAATGC 3 cut(s) 405, 562, 699
BsnI GGCC 7 cut(s) 30, 38, 43, 249, 298, 589, 739
Bso31I GGTCTC 1 cut(s) 671
BsoBI CYCGRG 3 cut(s) 209, 387, 609
Bsp120I GGGCCC 1 cut(s) 296
Bsp1286I GDGCHC 3 cut(s) 300, 334, 859
Bsp143I GATC 1 cut(s) 430
Bsp1720I GCTNAGC 2 cut(s) 75, 840
BspACI CCGC 6 cut(s) 48, 71, 96, 142, 154, 512
BspANI GGCC 7 cut(s) 30, 38, 43, 249, 298, 589, 739
BspCNI CTCAG 4 cut(s) 88, 298, 484, 853
BspFNI CGCG 1 cut(s) 144
BspHI TCATGA 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 298
BspMAI CTGCAG 2 cut(s) 577, 697
BspQI GCTCTTC 1 cut(s) 363
BspTNI GGTCTC 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 48
BsrDI GCAATG 2 cut(s) 469, 786
BsrFI RCCGGY 1 cut(s) 514
BsrI ACTGG 3 cut(s) 72, 112, 424
BssAI RCCGGY 1 cut(s) 514
BssECI CCNNGG 2 cut(s) 258, 259
BssMI GATC 1 cut(s) 430
BssNI GRCGYC 3 cut(s) 55, 147, 518
BssSI CACGAG 1 cut(s) 489
Bst2BI CACGAG 1 cut(s) 489
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 595
Bst6I CTCTTC 2 cut(s) 261, 363
BstACI GRCGYC 3 cut(s) 55, 147, 518
BstAPI GCANNNNNTGC 1 cut(s) 329
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 7 cut(s) 32, 36, 139, 251, 330, 516, 697
BstDEI CTNAG 4 cut(s) 75, 285, 471, 840
BstFNI CGCG 1 cut(s) 144
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 2 cut(s) 191, 671
BstMBI GATC 1 cut(s) 430
BstMWI GCNNNNNNNGC 6 cut(s) 40, 54, 211, 304, 329, 836
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 3 cut(s) 20, 38, 258
BstSFI CTRYAG 5 cut(s) 237, 573, 603, 693, 825
BstSLI GKGCMC 3 cut(s) 300, 334, 859
BstUI CGCG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 294, 379, 679, 778
BstV2I GAAGAC 2 cut(s) 468, 492
BstXI CCANNNNNNTGG 1 cut(s) 164
BsuRI GGCC 7 cut(s) 30, 38, 43, 249, 298, 589, 739
BtsIMutI CAGTG 2 cut(s) 65, 454
Cac8I GCNNGC 7 cut(s) 32, 36, 139, 251, 330, 516, 697
CciI TCATGA 1 cut(s) 87
Cfr10I RCCGGY 1 cut(s) 514
Cfr13I GGNCC 5 cut(s) 28, 41, 247, 296, 297
CseI GACGC 4 cut(s) 63, 143, 155, 507
Csp6I GTAC 4 cut(s) 115, 168, 271, 346
CviAII CATG 1 cut(s) 88
CviQI GTAC 4 cut(s) 115, 168, 271, 346
DdeI CTNAG 4 cut(s) 75, 285, 471, 840
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 261, 363
EarI CTCTTC 2 cut(s) 261, 363
EciI GGCGGA 1 cut(s) 143
Eco147I AGGCCT 1 cut(s) 739
Eco24I GRGCYC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 671
Eco32I GATATC 1 cut(s) 280
Eco57I CTGAAG 3 cut(s) 510, 816, 819
Eco88I CYCGRG 3 cut(s) 209, 387, 609
EcoO109I RGGNCCY 2 cut(s) 296, 297
EcoRII CCWGG 1 cut(s) 258
EcoRV GATATC 1 cut(s) 280
EcoT22I ATGCAT 1 cut(s) 562
EcoT38I GRGCYC 1 cut(s) 300
FaeI CATG 1 cut(s) 91
FatI CATG 1 cut(s) 87
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 8 cut(s) 72, 96, 142, 308, 393, 512, 693, 792
FriOI GRGCYC 1 cut(s) 300
Fsp4HI GCNGC 8 cut(s) 72, 96, 142, 308, 393, 512, 693, 792
FspBI CTAG 1 cut(s) 741
GluI GCNGC 8 cut(s) 72, 96, 142, 308, 393, 512, 693, 792
HaeIII GGCC 7 cut(s) 30, 38, 43, 249, 298, 589, 739
HapII CCGG 4 cut(s) 21, 39, 80, 515
HgaI GACGC 4 cut(s) 63, 143, 155, 507
Hin1I GRCGYC 3 cut(s) 55, 147, 518
Hin1II CATG 1 cut(s) 91
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 419, 772
HpaII CCGG 4 cut(s) 21, 39, 80, 515
Hpy166II GTNNAC 5 cut(s) 130, 332, 346, 439, 857
Hpy188I TCNGA 2 cut(s) 430, 582
Hpy188III TCNNGA 3 cut(s) 88, 387, 611
Hpy8I GTNNAC 5 cut(s) 130, 332, 346, 439, 857
Hpy99I CGWCG 2 cut(s) 137, 149
HpyAV CCTTC 4 cut(s) 133, 160, 656, 791
HpyCH4III ACNGT 1 cut(s) 595
HpyCH4IV ACGT 2 cut(s) 634, 688
HpyCH4V TGCA 8 cut(s) 293, 332, 371, 560, 575, 622, 695, 857
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 54, 211, 304, 329, 836
HpyF3I CTNAG 4 cut(s) 75, 285, 471, 840
HpySE526I ACGT 2 cut(s) 634, 688
Hsp92I GRCGYC 3 cut(s) 55, 147, 518
Hsp92II CATG 1 cut(s) 91
KroI GCCGGC 1 cut(s) 514
KroNI GCCGGC 1 cut(s) 516
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 1 cut(s) 430
LguI GCTCTTC 1 cut(s) 363
Lsp1109I GCAGC 4 cut(s) 294, 379, 679, 778
LweI GCATC 2 cut(s) 453, 457
MaeI CTAG 1 cut(s) 741
MaeII ACGT 2 cut(s) 634, 688
MaeIII GTNAC 1 cut(s) 8
MalI GATC 1 cut(s) 432
MbiI CCGCTC 1 cut(s) 48
MboI GATC 1 cut(s) 430
MboII GAAGA 6 cut(s) 278, 350, 468, 471, 492, 875
MfeI CAATTG 1 cut(s) 623
MhlI GDGCHC 3 cut(s) 300, 334, 859
MluCI AATT 5 cut(s) 174, 378, 623, 750, 814
MmeI TCCRAC 1 cut(s) 338
MnlI CCTC 7 cut(s) 44, 76, 130, 170, 321, 514, 832
Mph1103I ATGCAT 1 cut(s) 562
MreI CGCCGGCG 1 cut(s) 514
MroNI GCCGGC 1 cut(s) 514
MroXI GAANNNNTTC 1 cut(s) 382
MspI CCGG 4 cut(s) 21, 39, 80, 515
MspR9I CCNGG 3 cut(s) 22, 40, 260
MunI CAATTG 1 cut(s) 623
Mva1269I GAATGC 3 cut(s) 405, 562, 699
MvaI CCWGG 1 cut(s) 260
MvnI CGCG 1 cut(s) 144
MwoI GCNNNNNNNGC 6 cut(s) 40, 54, 211, 304, 329, 836
NaeI GCCGGC 1 cut(s) 516
NciI CCSGG 2 cut(s) 22, 40
NdeII GATC 1 cut(s) 430
NgoMIV GCCGGC 1 cut(s) 514
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 298
NmeAIII GCCGAG 1 cut(s) 69
NsiI ATGCAT 1 cut(s) 562
PaeR7I CTCGAG 2 cut(s) 387, 609
PagI TCATGA 1 cut(s) 87
PasI CCCWGGG 1 cut(s) 259
PceI AGGCCT 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 3 cut(s) 123, 141, 515
PctI GAATGC 3 cut(s) 405, 562, 699
PdiI GCCGGC 1 cut(s) 516
PdmI GAANNNNTTC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 419, 772
PflMI CCANNNNNTGG 1 cut(s) 754
PkrI GCNGC 8 cut(s) 73, 97, 143, 309, 394, 513, 694, 793
Ppu21I YACGTR 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 298
PspOMI GGGCCC 1 cut(s) 296
PspPI GGNCC 5 cut(s) 28, 41, 247, 296, 297
PstI CTGCAG 2 cut(s) 577, 697
RsaI GTAC 4 cut(s) 116, 169, 272, 347
RsaNI GTAC 4 cut(s) 115, 168, 271, 346
SapI GCTCTTC 1 cut(s) 363
SatI GCNGC 8 cut(s) 72, 96, 142, 308, 393, 512, 693, 792
Sau3AI GATC 1 cut(s) 430
Sau96I GGNCC 5 cut(s) 28, 41, 247, 296, 297
ScaI AGTACT 1 cut(s) 272
ScrFI CCNGG 3 cut(s) 22, 40, 260
SduI GDGCHC 3 cut(s) 300, 334, 859
SfaNI GCATC 2 cut(s) 453, 457
SfcI CTRYAG 5 cut(s) 237, 573, 603, 693, 825
Sfr274I CTCGAG 2 cut(s) 387, 609
SgrAI CRCCGGYG 1 cut(s) 514
SlaI CTCGAG 2 cut(s) 387, 609
SmlI CTYRAG 2 cut(s) 387, 609
SmoI CTYRAG 2 cut(s) 387, 609
Sse9I AATT 5 cut(s) 174, 378, 623, 750, 814
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 6 cut(s) 48, 71, 96, 142, 154, 512
SspMI CTAG 1 cut(s) 741
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 3 cut(s) 20, 38, 258
TaaI ACNGT 1 cut(s) 595
TaiI ACGT 2 cut(s) 637, 691
TaqI TCGA 3 cut(s) 388, 610, 683
TasI AATT 5 cut(s) 174, 378, 623, 750, 814
TatI WGTACW 1 cut(s) 270
TauI GCSGC 4 cut(s) 74, 98, 144, 514
TfiI GAWTC 2 cut(s) 419, 772
TscAI CASTG 2 cut(s) 72, 454
TseI GCWGC 4 cut(s) 307, 392, 692, 791
TspDTI ATGAA 4 cut(s) 328, 703, 858, 875
TspRI CASTG 2 cut(s) 72, 454
Van91I CCANNNNNTGG 1 cut(s) 754
VneI GTGCAC 2 cut(s) 330, 855
XapI RAATTY 1 cut(s) 750
XhoI CTCGAG 2 cut(s) 387, 609
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 1 cut(s) 741
ZrmI AGTACT 1 cut(s) 272
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.