Prupe.1G405700_v2.0.a1

Peroxisome biogenesis factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0005456
Physical Location & Seq
Forward (+)
35662177 .. 35665269
3093 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G405700.3

Sequence Viewer

Length: 1188 bp
ATGGGTTGGAACGAGGTAACCGGGTCGGGGCAGCAAGCTGGGCCGAGCGGAGTAGAAGCGGGTCCCAGTAGCAGCGACCCTGGCGAGGCGCGGCGGTTCCCACTGGCGGCTCAGCCGGAGATCATGAGAGCAGCCGAAAAGGACGACCAGTACGCTTCCTTCGTCTACGACGCTTGCCGCGATGCCGTCCGCCACCTCTTGGGTACAAGAACTGCTGTAGCTTACCAGAACGAGACAAAGCTTCTTGGGCAAGTGCTTTATTACGTTTTGACAACAGGGTCAGGCCAGCAAACTCTTGGGGAAGAGTACTGCGACATCACTCAGGTTGCAGGGCCTTATGGGCTGCCTCCAACCCCAGCAAGGCGAGCACTTTTCATTGTGTACCAGACGGCACTTCCTTATATTGCAGAACGAATTAGTTCTAGAGCTGCTAACCGTGGCATTGTACTTGCTGATTCCGATGAGCTCTATGGCAATAATGCTTCATTGAGCAATGATGTTCAGTCTTCTTCAGTCACCCCTACTTCAACTGCCTCTACATCAGGGGCATCTGCTTCAGCTATCAGAAGATTAAAAGAGAAATTCAACGGATTATGGCTTTCTTTAGTTCGCAGATGGCCTACGGTGCTTCCTATAGCTCGTGAATTTTTGCAATTGGTTATTCGTGCTAACCTCATGTTCTTTTACTTTGAAGGCCTCTTTTATCATATATCAAAACGTACAGCAGGCATTCGTTATGTGTTCATTGGAAAACCATCCAACCAAAGGCCTAGATACCAAATTCTGGGCGTATTCCTGTTGATTCAGCTCTGTATTATAGCTGCTGAAGGACTGAGGCGGAGTAATTTATCTTCTATCGCAGGTTCATCTCATCAGACTTTTGGTACACACCAAACTTCTGGAGGTCGAGATTTGCCTGTGTTAAATGAGGAAGGTCATTTGATATCAGCAGACGCTGCCAAGGGAAGTTGGGTCTCTGATTCATCGACTTCAGAGTCTCAGGCCAGTGGGATGAGCAAATGCACACTCTGTTTGAGTAATCGGCAACACCCAACAGCCACACCTTGCGGCCATGTATTTTGCTGGAGTTGCATTATGGAGTGGTGCAATGAAAAGCCTGAATGCCCCCTCTGCCGGACTCCCATAACTCATTCGAGCCTAGTTTGCTTGTACCATTCAGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005829 GO:0006082 GO:0006464 GO:0006513 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009790 GO:0009791 GO:0009793 GO:0009853 GO:0009987 GO:0010154 GO:0010381 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0022406 GO:0022414 GO:0030258 GO:0031090 GO:0031903 GO:0032446 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042579 GO:0042886 GO:0043094 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061458 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0098588 GO:0098805 GO:0140056 GO:0140096 GO:1901564 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
Pex2_Pex12 zf-C3HC4_3 zf-RING_2

Protein Analysis

396

Amino Acids

43.15

Weight (kDa)

7.95

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 277, 994
Acc36I ACCTGC 1 cut(s) 851
AccB7I CCANNNNNTGG 2 cut(s) 199, 784
AccBSI CCGCTC 1 cut(s) 48
AccI GTMKAC 1 cut(s) 165
AccII CGCG 2 cut(s) 91, 180
AciI CCGC 9 cut(s) 48, 59, 91, 94, 107, 178, 190, 838, 1068
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 3 cut(s) 581, 644, 780
AcuI CTGAAG 4 cut(s) 495, 540, 846, 975
AfaI GTAC 8 cut(s) 152, 205, 308, 383, 447, 721, 886, 1172
AfiI CCNNNNNNNGG 8 cut(s) 27, 85, 106, 199, 360, 765, 784, 1134
AgsI TTSAA 3 cut(s) 528, 586, 692
AjnI CCWGG 1 cut(s) 79
AluBI AGCT 9 cut(s) 38, 221, 241, 428, 466, 560, 638, 808, 821
AluI AGCT 9 cut(s) 38, 221, 241, 428, 466, 560, 638, 808, 821
Alw21I GWGCWC 2 cut(s) 370, 468
Alw26I GTCTC 3 cut(s) 227, 979, 1002
AlwNI CAGNNNCTG 1 cut(s) 956
AoxI GGCC 8 cut(s) 41, 283, 332, 617, 694, 767, 1002, 1069
ApeKI GCWGC 7 cut(s) 31, 72, 131, 343, 428, 821, 956
ApoI RAATTY 3 cut(s) 581, 644, 780
Asp700I GAANNNNTTC 1 cut(s) 418
AspLEI GCGC 1 cut(s) 91
AspS9I GGNCC 3 cut(s) 41, 62, 332
AsuC2I CCSGG 1 cut(s) 22
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 468
BarI GAAGNNNNNNTAC 4 cut(s) 143, 175, 835, 867
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 1 cut(s) 498
Bbv12I GWGCWC 2 cut(s) 370, 468
BbvI GCAGC 7 cut(s) 43, 84, 143, 330, 415, 808, 943
BccI CCATC 2 cut(s) 609, 763
BceAI ACGGC 2 cut(s) 170, 405
BciT130I CCWGG 1 cut(s) 81
BcnI CCSGG 1 cut(s) 22
BcoDI GTCTC 3 cut(s) 227, 979, 1002
BfaI CTAG 4 cut(s) 423, 771, 1160, 1186
BfmI CTRYAG 2 cut(s) 216, 633
BfuAI ACCTGC 1 cut(s) 851
BglI GCCNNNNNGGC 1 cut(s) 340
BlpI GCTNAGC 1 cut(s) 111
BmcAI AGTACT 1 cut(s) 308
Bme1390I CCNGG 2 cut(s) 22, 81
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 3 cut(s) 41, 62, 332
BmiI GGNNCC 3 cut(s) 63, 64, 98
BmrFI CCNGG 2 cut(s) 22, 81
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 2 cut(s) 172, 557
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 498
BpmI CTGGAG 2 cut(s) 921, 1105
Bpu1102I GCTNAGC 1 cut(s) 111
BpuMI CCSGG 1 cut(s) 22
BsaI GGTCTC 1 cut(s) 979
BsaJI CCNNGG 3 cut(s) 79, 436, 960
Bsc4I CCNNNNNNNGG 8 cut(s) 27, 85, 106, 199, 360, 765, 784, 1134
Bse1I ACTGG 4 cut(s) 66, 108, 148, 1005
Bse3DI GCAATG 2 cut(s) 499, 1114
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 3 cut(s) 79, 436, 960
BseGI GGATG 2 cut(s) 755, 1017
BseLI CCNNNNNNNGG 8 cut(s) 27, 85, 106, 199, 360, 765, 784, 1134
BseMI GCAATG 2 cut(s) 499, 1114
BseMII CTCAG 4 cut(s) 125, 335, 824, 1013
BseNI ACTGG 4 cut(s) 66, 108, 148, 1005
BseXI GCAGC 7 cut(s) 43, 84, 143, 330, 415, 808, 943
BseYI CCCAGC 2 cut(s) 38, 355
Bsh1236I CGCG 2 cut(s) 91, 180
BshFI GGCC 8 cut(s) 43, 285, 334, 619, 696, 769, 1004, 1071
BsiHKAI GWGCWC 2 cut(s) 370, 468
BsiSI CCGG 3 cut(s) 21, 116, 1135
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 8 cut(s) 27, 85, 106, 199, 360, 765, 784, 1134
BsmAI GTCTC 3 cut(s) 227, 979, 1002
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 2 cut(s) 729, 1127
BsnI GGCC 8 cut(s) 43, 285, 334, 619, 696, 769, 1004, 1071
Bso31I GGTCTC 1 cut(s) 979
Bsp1286I GDGCHC 2 cut(s) 370, 468
Bsp143I GATC 1 cut(s) 120
Bsp1720I GCTNAGC 1 cut(s) 111
BspACI CCGC 9 cut(s) 48, 59, 91, 94, 107, 178, 190, 838, 1068
BspANI GGCC 8 cut(s) 43, 285, 334, 619, 696, 769, 1004, 1071
BspCNI CTCAG 4 cut(s) 124, 334, 825, 1012
BspFNI CGCG 2 cut(s) 91, 180
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 63, 64, 98
BspMI ACCTGC 1 cut(s) 851
BspTNI GGTCTC 1 cut(s) 979
BsrBI CCGCTC 1 cut(s) 48
BsrDI GCAATG 2 cut(s) 499, 1114
BsrI ACTGG 4 cut(s) 66, 108, 148, 1005
BssECI CCNNGG 3 cut(s) 79, 436, 960
BssMI GATC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 960
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 437, 625
Bst6I CTCTTC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 956
BstC8I GCNNGC 5 cut(s) 36, 175, 287, 366, 727
BstDEI CTNAG 4 cut(s) 111, 321, 833, 999
BstDSI CCRYGG 1 cut(s) 436
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 2 cut(s) 755, 1017
BstFNI CGCG 2 cut(s) 91, 180
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 3 cut(s) 227, 979, 1002
BstMBI GATC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 20, 79
BstSFI CTRYAG 2 cut(s) 216, 633
BstUI CGCG 2 cut(s) 91, 180
BstV1I GCAGC 7 cut(s) 43, 84, 143, 330, 415, 808, 943
BstV2I GAAGAC 1 cut(s) 498
BstXI CCANNNNNNTGG 1 cut(s) 899
BsuRI GGCC 8 cut(s) 43, 285, 334, 619, 696, 769, 1004, 1071
BtgI CCRYGG 1 cut(s) 436
BtgZI GCGATG 1 cut(s) 195
BtsCI GGATG 2 cut(s) 755, 1017
BtsIMutI CAGTG 2 cut(s) 101, 1012
BveI ACCTGC 1 cut(s) 851
Cac8I GCNNGC 5 cut(s) 36, 175, 287, 366, 727
CaiI CAGNNNCTG 1 cut(s) 956
CciI TCATGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 91
Cfr13I GGNCC 3 cut(s) 41, 62, 332
CseI GACGC 2 cut(s) 179, 962
Csp6I GTAC 8 cut(s) 151, 204, 307, 382, 446, 720, 885, 1171
CviAII CATG 3 cut(s) 124, 676, 1073
CviQI GTAC 8 cut(s) 151, 204, 307, 382, 446, 720, 885, 1171
DdeI CTNAG 4 cut(s) 111, 321, 833, 999
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DrdI GACNNNNNNGTC 2 cut(s) 277, 994
DseDI GACNNNNNNGTC 2 cut(s) 277, 994
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
EciI GGCGGA 2 cut(s) 179, 853
Ecl136II GAGCTC 1 cut(s) 466
Eco130I CCWWGG 1 cut(s) 960
Eco147I AGGCCT 2 cut(s) 696, 769
Eco24I GRGCYC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 979
Eco32I GATATC 1 cut(s) 945
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 466
Eco57I CTGAAG 4 cut(s) 495, 540, 846, 975
Eco91I GGTNACC 1 cut(s) 16
EcoICRI GAGCTC 1 cut(s) 466
EcoO109I RGGNCCY 2 cut(s) 62, 332
EcoO65I GGTNACC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 79
EcoRV GATATC 1 cut(s) 945
EcoT14I CCWWGG 1 cut(s) 960
EcoT38I GRGCYC 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 3 cut(s) 127, 679, 1076
FaqI GGGAC 1 cut(s) 48
FatI CATG 3 cut(s) 123, 675, 1072
FauI CCCGC 1 cut(s) 52
FblI GTMKAC 1 cut(s) 165
FokI GGATG 2 cut(s) 742, 1024
FriOI GRGCYC 1 cut(s) 468
FspBI CTAG 4 cut(s) 423, 771, 1160, 1186
GlaI GCGC 1 cut(s) 90
GsaI CCCAGC 2 cut(s) 42, 359
GsuI CTGGAG 2 cut(s) 921, 1105
HaeIII GGCC 8 cut(s) 43, 285, 334, 619, 696, 769, 1004, 1071
HapII CCGG 3 cut(s) 21, 116, 1135
HgaI GACGC 2 cut(s) 179, 962
HhaI GCGC 1 cut(s) 91
Hin1II CATG 3 cut(s) 127, 679, 1076
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HindIII AAGCTT 1 cut(s) 239
HinfI GANTC 5 cut(s) 455, 802, 980, 995, 1138
HpaII CCGG 3 cut(s) 21, 116, 1135
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 3 cut(s) 166, 382, 887
Hpy188I TCNGA 6 cut(s) 460, 566, 876, 979, 994, 1180
Hpy188III TCNNGA 5 cut(s) 124, 423, 641, 900, 908
Hpy8I GTNNAC 3 cut(s) 166, 382, 887
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 4 cut(s) 169, 686, 821, 926
HpyCH4III ACNGT 2 cut(s) 437, 625
HpyCH4IV ACGT 2 cut(s) 264, 718
HpyCH4V TGCA 6 cut(s) 329, 407, 652, 1023, 1092, 1107
HpyF3I CTNAG 4 cut(s) 111, 321, 833, 999
HpySE526I ACGT 2 cut(s) 264, 718
Hsp92II CATG 3 cut(s) 127, 679, 1076
HspAI GCGC 1 cut(s) 89
KflI GGGWCCC 1 cut(s) 62
Kzo9I GATC 1 cut(s) 120
Lsp1109I GCAGC 7 cut(s) 43, 84, 143, 330, 415, 808, 943
LweI GCATC 2 cut(s) 172, 557
MaeI CTAG 4 cut(s) 423, 771, 1160, 1186
MaeII ACGT 2 cut(s) 264, 718
MaeIII GTNAC 2 cut(s) 16, 514
MalI GATC 1 cut(s) 122
MbiI CCGCTC 1 cut(s) 48
MboI GATC 1 cut(s) 120
MboII GAAGA 5 cut(s) 314, 498, 501, 579, 843
MfeI CAATTG 1 cut(s) 653
MhlI GDGCHC 2 cut(s) 370, 468
MluCI AATT 6 cut(s) 414, 581, 644, 653, 780, 844
MlyI GAGTC 2 cut(s) 1004, 1132
MmeI TCCRAC 2 cut(s) 374, 783
MroXI GAANNNNTTC 1 cut(s) 418
MseI TTAA 2 cut(s) 572, 923
MspI CCGG 3 cut(s) 21, 116, 1135
MspR9I CCNGG 2 cut(s) 22, 81
MunI CAATTG 1 cut(s) 653
Mva1269I GAATGC 2 cut(s) 729, 1127
MvaI CCWGG 1 cut(s) 81
MvnI CGCG 2 cut(s) 91, 180
NciI CCSGG 1 cut(s) 22
NdeII GATC 1 cut(s) 120
NlaIII CATG 3 cut(s) 127, 679, 1076
NlaIV GGNNCC 3 cut(s) 63, 64, 98
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 1 cut(s) 514
PagI TCATGA 1 cut(s) 123
PceI AGGCCT 2 cut(s) 696, 769
PcsI WCGNNNNNNNCGW 2 cut(s) 159, 177
PctI GAATGC 2 cut(s) 729, 1127
PdmI GAANNNNTTC 1 cut(s) 418
PfeI GAWTC 3 cut(s) 455, 802, 980
PflMI CCANNNNNTGG 2 cut(s) 199, 784
PleI GAGTC 2 cut(s) 1003, 1132
PpsI GAGTC 2 cut(s) 1003, 1132
PpuMI RGGWCCY 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 468
Psp5II RGGWCCY 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 16
PspFI CCCAGC 2 cut(s) 38, 355
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 3 cut(s) 63, 64, 98
PspPI GGNCC 3 cut(s) 41, 62, 332
PspPPI RGGWCCY 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 956
RsaI GTAC 8 cut(s) 152, 205, 308, 383, 447, 721, 886, 1172
RsaNI GTAC 8 cut(s) 151, 204, 307, 382, 446, 720, 885, 1171
SacI GAGCTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 572, 923
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 3 cut(s) 41, 62, 332
ScaI AGTACT 1 cut(s) 308
SchI GAGTC 2 cut(s) 1004, 1132
ScrFI CCNGG 2 cut(s) 22, 81
SduI GDGCHC 2 cut(s) 370, 468
SfaNI GCATC 2 cut(s) 172, 557
SfcI CTRYAG 2 cut(s) 216, 633
SinI GGWCC 1 cut(s) 62
Sse9I AATT 6 cut(s) 414, 581, 644, 653, 780, 844
SseBI AGGCCT 2 cut(s) 696, 769
SsiI CCGC 9 cut(s) 48, 59, 91, 94, 107, 178, 190, 838, 1068
SspMI CTAG 4 cut(s) 423, 771, 1160, 1186
SstI GAGCTC 1 cut(s) 468
StuI AGGCCT 2 cut(s) 696, 769
StyD4I CCNGG 2 cut(s) 20, 79
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 2 cut(s) 437, 625
TaiI ACGT 2 cut(s) 267, 721
TaqI TCGA 3 cut(s) 907, 986, 1154
TasI AATT 6 cut(s) 414, 581, 644, 653, 780, 844
TatI WGTACW 2 cut(s) 306, 445
TauI GCSGC 4 cut(s) 94, 110, 180, 1071
TfiI GAWTC 3 cut(s) 455, 802, 980
Tru1I TTAA 2 cut(s) 572, 923
Tru9I TTAA 2 cut(s) 572, 923
TscAI CASTG 2 cut(s) 108, 1012
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 7 cut(s) 31, 72, 131, 343, 428, 821, 956
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 6 cut(s) 364, 474, 733, 855, 972, 1125
TspGWI ACGGA 1 cut(s) 603
TspRI CASTG 2 cut(s) 108, 1012
Van91I CCANNNNNTGG 2 cut(s) 199, 784
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 3 cut(s) 581, 644, 780
XbaI TCTAGA 1 cut(s) 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 293
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 418
XspI CTAG 4 cut(s) 423, 771, 1160, 1186
ZrmI AGTACT 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.